Wall clock time and date at job start Sat Apr 11 2020 06:25:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42897 * 113.99810 * 2 1
4 4 H 1.09001 * 109.47364 * 30.00454 * 3 2 1
5 5 C 1.52993 * 109.47314 * 269.99957 * 3 2 1
6 6 C 1.53006 * 109.46643 * 149.99862 * 3 2 1
7 7 C 1.50697 * 109.47461 * 295.00341 * 6 3 2
8 8 O 1.21283 * 119.99924 * 359.97438 * 7 6 3
9 9 N 1.34770 * 120.00147 * 180.02562 * 7 6 3
10 10 C 1.46504 * 120.00465 * 179.97438 * 9 7 6
11 11 C 1.52993 * 109.47351 * 179.97438 * 10 9 7
12 12 C 1.53001 * 109.47018 * 180.02562 * 11 10 9
13 13 H 1.09000 * 110.88035 * 57.38854 * 12 11 10
14 14 C 1.55152 * 110.98818 * 293.54226 * 12 11 10
15 15 C 1.54319 * 103.02012 * 206.25514 * 14 12 11
16 16 N 1.47453 * 107.23098 * 22.28600 * 15 14 12
17 17 C 1.46893 * 110.99929 * 123.25740 * 16 15 14
18 18 C 1.50708 * 109.47146 * 69.87269 * 17 16 15
19 19 O 1.21288 * 119.99815 * 359.97438 * 18 17 16
20 20 N 1.34774 * 119.99719 * 180.02562 * 18 17 16
21 21 C 1.37101 * 119.99349 * 180.02562 * 20 18 17
22 22 H 1.07991 * 120.00515 * 359.97438 * 21 20 18
23 23 C 1.38955 * 119.99490 * 179.97438 * 21 20 18
24 24 N 1.31413 * 120.00236 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 119.99845 * 179.97438 * 23 21 20
26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21
27 27 H 1.48502 * 109.47194 * 300.00675 * 25 23 21
28 28 H 1.48498 * 109.47018 * 60.00238 * 25 23 21
29 29 C 1.47846 * 108.56762 * 0.98600 * 16 15 14
30 30 H 1.09002 * 109.46780 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46899 * 299.99634 * 1 2 3
32 32 H 1.09002 * 109.46825 * 60.00203 * 1 2 3
33 33 H 1.08999 * 109.47161 * 300.00008 * 5 3 2
34 34 H 1.09002 * 109.47136 * 60.00608 * 5 3 2
35 35 H 1.09003 * 109.46913 * 180.02562 * 5 3 2
36 36 H 1.09001 * 109.46825 * 174.99975 * 6 3 2
37 37 H 1.09008 * 109.47099 * 55.00640 * 6 3 2
38 38 H 0.97003 * 120.00080 * 359.97438 * 9 7 6
39 39 H 1.09008 * 109.46900 * 59.99506 * 10 9 7
40 40 H 1.09003 * 109.46640 * 299.99931 * 10 9 7
41 41 H 1.08996 * 109.47178 * 60.00174 * 11 10 9
42 42 H 1.09003 * 109.47234 * 299.99619 * 11 10 9
43 43 H 1.09000 * 110.69737 * 87.87324 * 14 12 11
44 44 H 1.08993 * 110.70653 * 324.64231 * 14 12 11
45 45 H 1.08997 * 109.88656 * 262.88239 * 15 14 12
46 46 H 1.08988 * 110.02346 * 141.76550 * 15 14 12
47 47 H 1.09002 * 109.47091 * 309.87440 * 17 16 15
48 48 H 1.09000 * 109.47343 * 189.87057 * 17 16 15
49 49 H 0.96996 * 120.00564 * 359.97438 * 20 18 17
50 50 H 0.97001 * 119.99781 * 179.97438 * 24 23 21
51 51 H 1.09002 * 110.37001 * 94.73357 * 29 16 15
52 52 H 1.08991 * 110.37386 * 217.07721 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3450 1.9994 0.5139
5 6 2.2177 1.7714 -1.4424
6 6 3.3589 1.2632 0.7213
7 6 3.1417 0.9234 2.1733
8 8 2.0186 0.7342 2.5904
9 7 4.1952 0.8308 3.0087
10 6 3.9840 0.5011 4.4204
11 6 5.3326 0.4587 5.1416
12 6 5.1121 0.1137 6.6158
13 1 4.5873 -0.8362 6.7181
14 6 4.3493 1.2513 7.3446
15 6 4.8032 1.0905 8.8108
16 7 6.0866 0.3646 8.7935
17 6 7.1364 1.1351 9.4733
18 6 6.8569 1.1674 10.9539
19 8 5.8791 0.6044 11.3989
20 7 7.6930 1.8229 11.7832
21 6 7.4390 1.8518 13.1302
22 1 6.5688 1.3498 13.5266
23 6 8.3012 2.5271 13.9854
24 7 9.3603 3.1376 13.5031
25 14 7.9548 2.5672 15.8206
26 1 9.0164 3.3456 16.5078
27 1 6.6364 3.2068 16.0616
28 1 7.9365 1.1804 16.3512
29 6 6.4549 0.0927 7.3877
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3633 0.5138 -0.8900
33 1 2.8830 1.0775 -1.9562
34 1 1.2568 1.8015 -1.9562
35 1 2.6614 2.7670 -1.4423
36 1 3.8427 2.2369 0.6444
37 1 3.9932 0.5051 0.2617
38 1 5.0934 0.9825 2.6752
39 1 3.5003 -0.4727 4.4976
40 1 3.3496 1.2593 4.8796
41 1 5.8167 1.4322 5.0644
42 1 5.9666 -0.2998 4.6823
43 1 3.2720 1.1106 7.2570
44 1 4.6448 2.2251 6.9543
45 1 4.0613 0.5187 9.3680
46 1 4.9374 2.0700 9.2695
47 1 7.1498 2.1531 9.0838
48 1 8.1040 0.6655 9.2964
49 1 8.4747 2.2735 11.4273
50 1 9.9620 3.6093 14.1001
51 1 7.1204 0.8703 7.0127
52 1 6.9269 -0.8859 7.3015
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267554048.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:46
Heat of formation + Delta-G solvation = -127.445073 kcal
Electronic energy + Delta-G solvation = -29032.851842 eV
Core-core repulsion = 24838.937239 eV
Total energy + Delta-G solvation = -4193.914603 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.21284 -39.33390 -38.26107 -37.65684 -35.60365 -33.91683 -33.39010 -32.83823
-31.20029 -30.08518 -28.92555 -27.88152 -26.87250 -26.12082 -24.16900 -23.13719
-21.98420 -20.91053 -20.78333 -20.12734 -18.96380 -17.79798 -17.44776 -17.26649
-16.50088 -16.22385 -15.89732 -15.61624 -15.40203 -15.23074 -14.88850 -14.54850
-14.40472 -14.01350 -13.82374 -13.74413 -13.35389 -13.25330 -13.06819 -13.01534
-12.62933 -12.49792 -12.36624 -12.31133 -12.05485 -11.83565 -11.78454 -11.59409
-11.44219 -11.14947 -11.06954 -10.97115 -10.90073 -10.66637 -10.51443 -10.41890
-10.18249 -10.10410 -9.92103 -9.45421 -9.34717 -8.39888 -7.92829 -7.82827
-6.38345 -3.78919 2.39608 2.83764 3.22380 3.27518 3.32218 3.42239
3.95621 4.06298 4.26540 4.29351 4.34448 4.37924 4.60465 4.69482
4.80448 4.85750 4.95391 4.99966 5.00458 5.01709 5.08611 5.20190
5.20926 5.23078 5.27972 5.33236 5.38925 5.45204 5.46551 5.48451
5.58218 5.67790 5.69744 5.78056 5.80108 5.86958 5.88050 5.98762
6.14340 6.15306 6.24557 6.34426 6.53029 6.86992 7.18159 7.32184
7.33513 7.58120 7.95832 8.10044 8.66295 9.22027 9.58783 10.11364
10.79530
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.036464 B = 0.001395 C = 0.001381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 767.695179 B =20070.883099 C =20266.379507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.378 6.378
3 C 0.099 3.901
4 H 0.068 0.932
5 C -0.175 4.175
6 C -0.141 4.141
7 C 0.513 3.487
8 O -0.532 6.532
9 N -0.734 5.734
10 C 0.119 3.881
11 C -0.119 4.119
12 C -0.093 4.093
13 H 0.088 0.912
14 C -0.141 4.141
15 C 0.057 3.943
16 N -0.507 5.507
17 C 0.042 3.958
18 C 0.444 3.556
19 O -0.576 6.576
20 N -0.567 5.567
21 C -0.298 4.298
22 H 0.102 0.898
23 C 0.022 3.978
24 N -0.904 5.904
25 Si 0.930 3.070
26 H -0.285 1.285
27 H -0.274 1.274
28 H -0.274 1.274
29 C 0.048 3.952
30 H 0.082 0.918
31 H 0.046 0.954
32 H 0.035 0.965
33 H 0.065 0.935
34 H 0.060 0.940
35 H 0.067 0.933
36 H 0.105 0.895
37 H 0.102 0.898
38 H 0.399 0.601
39 H 0.068 0.932
40 H 0.069 0.931
41 H 0.069 0.931
42 H 0.071 0.929
43 H 0.073 0.927
44 H 0.064 0.936
45 H 0.081 0.919
46 H 0.053 0.947
47 H 0.047 0.953
48 H 0.086 0.914
49 H 0.391 0.609
50 H 0.271 0.729
51 H 0.044 0.956
52 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.328 -1.064 -30.736 31.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.297 6.297
3 C 0.041 3.959
4 H 0.086 0.914
5 C -0.233 4.233
6 C -0.181 4.181
7 C 0.299 3.701
8 O -0.408 6.408
9 N -0.387 5.387
10 C -0.004 4.004
11 C -0.158 4.158
12 C -0.113 4.113
13 H 0.106 0.894
14 C -0.179 4.179
15 C -0.071 4.071
16 N -0.231 5.231
17 C -0.090 4.090
18 C 0.229 3.771
19 O -0.459 6.459
20 N -0.204 5.204
21 C -0.428 4.428
22 H 0.120 0.880
23 C -0.179 4.179
24 N -0.545 5.545
25 Si 0.757 3.243
26 H -0.210 1.210
27 H -0.200 1.200
28 H -0.199 1.199
29 C -0.080 4.080
30 H 0.100 0.900
31 H 0.065 0.935
32 H 0.054 0.946
33 H 0.084 0.916
34 H 0.079 0.921
35 H 0.086 0.914
36 H 0.124 0.876
37 H 0.120 0.880
38 H 0.233 0.767
39 H 0.086 0.914
40 H 0.087 0.913
41 H 0.088 0.912
42 H 0.090 0.910
43 H 0.092 0.908
44 H 0.083 0.917
45 H 0.100 0.900
46 H 0.072 0.928
47 H 0.065 0.935
48 H 0.104 0.896
49 H 0.224 0.776
50 H 0.081 0.919
51 H 0.062 0.938
52 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -9.604 -2.107 -29.718 31.302
hybrid contribution 0.917 1.465 0.181 1.737
sum -8.688 -0.643 -29.536 30.794
Atomic orbital electron populations
1.22707 0.80885 1.02548 0.99760 1.87880 1.19920 1.26904 1.94959
1.21777 0.93519 0.85955 0.94665 0.91377 1.22305 1.02695 1.01659
0.96642 1.21864 0.99269 1.04453 0.92550 1.20547 0.84781 0.76750
0.87978 1.90710 1.23350 1.48886 1.77863 1.46061 1.09728 1.72698
1.10186 1.21390 0.97692 1.01533 0.79782 1.21738 0.96398 1.02439
0.95181 1.22217 0.96804 0.99746 0.92496 0.89366 1.22963 1.00620
0.98024 0.96335 1.22703 0.92050 0.97742 0.94579 1.63214 1.02252
1.45056 1.12558 1.22067 0.95723 0.96331 0.94896 1.19774 0.85880
0.84243 0.87168 1.90518 1.29842 1.48263 1.77302 1.41856 1.24255
1.47174 1.07152 1.19650 1.10001 1.31387 0.81739 0.88025 1.25240
0.95473 0.96638 1.00583 1.69606 1.13710 1.34823 1.36402 0.85929
0.77891 0.78440 0.82017 1.21013 1.19965 1.19915 1.23087 0.95975
1.01134 0.87802 0.89953 0.93507 0.94621 0.91623 0.92115 0.91448
0.87649 0.87973 0.76681 0.91392 0.91256 0.91210 0.91001 0.90817
0.91723 0.90047 0.92805 0.93459 0.89551 0.77570 0.91906 0.93766
0.90331
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.29 10.82 101.05 1.09 1.39 16
2 O -0.38 -3.67 9.58 -49.64 -0.48 -4.15 16
3 C 0.10 0.72 2.27 -26.73 -0.06 0.66 16
4 H 0.07 0.54 7.60 -51.93 -0.39 0.15 16
5 C -0.18 -0.85 9.53 37.15 0.35 -0.49 16
6 C -0.14 -0.82 5.41 -27.88 -0.15 -0.97 16
7 C 0.51 4.72 7.71 -10.99 -0.08 4.63 16
8 O -0.53 -7.16 15.42 -8.85 -0.14 -7.29 16
9 N -0.73 -5.26 5.56 -60.29 -0.33 -5.59 16
10 C 0.12 1.01 5.52 -4.04 -0.02 0.99 16
11 C -0.12 -0.88 4.84 -26.73 -0.13 -1.01 16
12 C -0.09 -0.95 3.07 -88.47 -0.27 -1.22 16
13 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
14 C -0.14 -1.64 5.58 -24.90 -0.14 -1.78 16
15 C 0.06 0.92 5.65 -2.83 -0.02 0.90 16
16 N -0.51 -8.53 4.85 -232.69 -1.13 -9.66 16
17 C 0.04 0.75 5.03 -4.98 -0.03 0.73 16
18 C 0.44 10.68 7.43 -10.98 -0.08 10.60 16
19 O -0.58 -15.89 15.12 5.55 0.08 -15.80 16
20 N -0.57 -14.57 5.29 -10.96 -0.06 -14.62 16
21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16
22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16
23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
24 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16
25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16
26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
29 C 0.05 0.59 6.15 -2.30 -0.01 0.57 16
30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16
32 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16
33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
34 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16
35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
36 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16
37 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16
38 H 0.40 1.67 8.47 -40.82 -0.35 1.32 16
39 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16
40 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16
41 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16
42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
43 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16
44 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16
45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16
46 H 0.05 0.95 7.31 -51.94 -0.38 0.57 16
47 H 0.05 0.78 7.96 -51.93 -0.41 0.37 16
48 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16
49 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16
50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
51 H 0.04 0.49 7.70 -51.93 -0.40 0.09 16
52 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
LS Contribution 421.41 15.07 6.35 6.35
Total: -1.00 -35.24 421.41 -9.09 -44.33
By element:
Atomic # 1 Polarization: 16.59 SS G_CDS: -9.30 Total: 7.29 kcal
Atomic # 6 Polarization: 6.72 SS G_CDS: 0.21 Total: 6.93 kcal
Atomic # 7 Polarization: -53.10 SS G_CDS: -0.80 Total: -53.90 kcal
Atomic # 8 Polarization: -26.72 SS G_CDS: -0.53 Total: -27.25 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Total LS contribution 6.35 Total: 6.35 kcal
Total: -35.24 -9.09 -44.33 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267554048.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.116 kcal
(2) G-P(sol) polarization free energy of solvation -35.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.358 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds