Wall clock time and date at job start Sat Apr 11 2020 06:25:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42897 * 113.99810 * 2 1
4 4 H 1.09001 * 109.47364 * 30.00454 * 3 2 1
5 5 C 1.52993 * 109.47314 * 269.99957 * 3 2 1
6 6 C 1.53006 * 109.46643 * 149.99862 * 3 2 1
7 7 C 1.50697 * 109.47461 * 295.00341 * 6 3 2
8 8 O 1.21283 * 119.99924 * 359.97438 * 7 6 3
9 9 N 1.34770 * 120.00147 * 180.02562 * 7 6 3
10 10 C 1.46504 * 120.00465 * 179.97438 * 9 7 6
11 11 C 1.52993 * 109.47351 * 179.97438 * 10 9 7
12 12 C 1.53001 * 109.47018 * 180.02562 * 11 10 9
13 13 H 1.09000 * 110.88035 * 57.38854 * 12 11 10
14 14 C 1.55152 * 110.98818 * 293.54226 * 12 11 10
15 15 C 1.54319 * 103.02012 * 206.25514 * 14 12 11
16 16 N 1.47453 * 107.23098 * 22.28600 * 15 14 12
17 17 C 1.46893 * 110.99929 * 123.25740 * 16 15 14
18 18 C 1.50708 * 109.47146 * 69.87269 * 17 16 15
19 19 O 1.21288 * 119.99815 * 359.97438 * 18 17 16
20 20 N 1.34774 * 119.99719 * 180.02562 * 18 17 16
21 21 C 1.37101 * 119.99349 * 180.02562 * 20 18 17
22 22 H 1.07991 * 120.00515 * 359.97438 * 21 20 18
23 23 C 1.38955 * 119.99490 * 179.97438 * 21 20 18
24 24 N 1.31413 * 120.00236 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 119.99845 * 179.97438 * 23 21 20
26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21
27 27 H 1.48502 * 109.47194 * 300.00675 * 25 23 21
28 28 H 1.48498 * 109.47018 * 60.00238 * 25 23 21
29 29 C 1.47846 * 108.56762 * 0.98600 * 16 15 14
30 30 H 1.09002 * 109.46780 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46899 * 299.99634 * 1 2 3
32 32 H 1.09002 * 109.46825 * 60.00203 * 1 2 3
33 33 H 1.08999 * 109.47161 * 300.00008 * 5 3 2
34 34 H 1.09002 * 109.47136 * 60.00608 * 5 3 2
35 35 H 1.09003 * 109.46913 * 180.02562 * 5 3 2
36 36 H 1.09001 * 109.46825 * 174.99975 * 6 3 2
37 37 H 1.09008 * 109.47099 * 55.00640 * 6 3 2
38 38 H 0.97003 * 120.00080 * 359.97438 * 9 7 6
39 39 H 1.09008 * 109.46900 * 59.99506 * 10 9 7
40 40 H 1.09003 * 109.46640 * 299.99931 * 10 9 7
41 41 H 1.08996 * 109.47178 * 60.00174 * 11 10 9
42 42 H 1.09003 * 109.47234 * 299.99619 * 11 10 9
43 43 H 1.09000 * 110.69737 * 87.87324 * 14 12 11
44 44 H 1.08993 * 110.70653 * 324.64231 * 14 12 11
45 45 H 1.08997 * 109.88656 * 262.88239 * 15 14 12
46 46 H 1.08988 * 110.02346 * 141.76550 * 15 14 12
47 47 H 1.09002 * 109.47091 * 309.87440 * 17 16 15
48 48 H 1.09000 * 109.47343 * 189.87057 * 17 16 15
49 49 H 0.96996 * 120.00564 * 359.97438 * 20 18 17
50 50 H 0.97001 * 119.99781 * 179.97438 * 24 23 21
51 51 H 1.09002 * 110.37001 * 94.73357 * 29 16 15
52 52 H 1.08991 * 110.37386 * 217.07721 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3450 1.9994 0.5139
5 6 2.2177 1.7714 -1.4424
6 6 3.3589 1.2632 0.7213
7 6 3.1417 0.9234 2.1733
8 8 2.0186 0.7342 2.5904
9 7 4.1952 0.8308 3.0087
10 6 3.9840 0.5011 4.4204
11 6 5.3326 0.4587 5.1416
12 6 5.1121 0.1137 6.6158
13 1 4.5873 -0.8362 6.7181
14 6 4.3493 1.2513 7.3446
15 6 4.8032 1.0905 8.8108
16 7 6.0866 0.3646 8.7935
17 6 7.1364 1.1351 9.4733
18 6 6.8569 1.1674 10.9539
19 8 5.8791 0.6044 11.3989
20 7 7.6930 1.8229 11.7832
21 6 7.4390 1.8518 13.1302
22 1 6.5688 1.3498 13.5266
23 6 8.3012 2.5271 13.9854
24 7 9.3603 3.1376 13.5031
25 14 7.9548 2.5672 15.8206
26 1 9.0164 3.3456 16.5078
27 1 6.6364 3.2068 16.0616
28 1 7.9365 1.1804 16.3512
29 6 6.4549 0.0927 7.3877
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3633 0.5138 -0.8900
33 1 2.8830 1.0775 -1.9562
34 1 1.2568 1.8015 -1.9562
35 1 2.6614 2.7670 -1.4423
36 1 3.8427 2.2369 0.6444
37 1 3.9932 0.5051 0.2617
38 1 5.0934 0.9825 2.6752
39 1 3.5003 -0.4727 4.4976
40 1 3.3496 1.2593 4.8796
41 1 5.8167 1.4322 5.0644
42 1 5.9666 -0.2998 4.6823
43 1 3.2720 1.1106 7.2570
44 1 4.6448 2.2251 6.9543
45 1 4.0613 0.5187 9.3680
46 1 4.9374 2.0700 9.2695
47 1 7.1498 2.1531 9.0838
48 1 8.1040 0.6655 9.2964
49 1 8.4747 2.2735 11.4273
50 1 9.9620 3.6093 14.1001
51 1 7.1204 0.8703 7.0127
52 1 6.9269 -0.8859 7.3015
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267554048.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:45
Heat of formation + Delta-G solvation = -154.424069 kcal
Electronic energy + Delta-G solvation = -29034.021739 eV
Core-core repulsion = 24838.937239 eV
Total energy + Delta-G solvation = -4195.084500 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.93835 -40.62629 -39.37302 -38.80758 -36.48708 -35.88582 -34.16503 -33.65319
-33.22598 -31.13314 -29.73020 -28.79304 -27.68335 -27.29312 -25.87758 -23.91007
-22.61417 -22.07723 -21.60222 -21.05788 -20.61479 -19.80726 -18.08624 -17.83591
-17.68235 -17.31551 -17.07868 -16.60893 -16.38218 -16.32120 -15.96896 -15.77479
-15.57193 -15.46968 -15.13396 -14.68863 -14.49104 -14.27137 -13.86827 -13.77054
-13.55402 -13.49931 -13.41958 -13.16262 -13.03166 -12.95681 -12.87053 -12.80642
-12.52782 -12.43134 -12.31657 -12.13413 -12.05819 -11.91016 -11.65518 -11.57684
-11.50429 -11.44701 -10.83551 -10.51328 -10.31046 -10.02783 -10.00215 -9.15756
-8.46065 -5.94755 1.39501 1.41041 1.51995 1.73665 2.07022 2.23912
2.29764 2.86904 2.90327 3.20510 3.37546 3.62399 3.72835 3.78712
3.87268 3.94920 4.12947 4.22744 4.31582 4.33149 4.37937 4.42329
4.43457 4.47083 4.52449 4.54110 4.58812 4.62592 4.67048 4.74621
4.75633 4.81405 4.83162 4.90770 4.94070 4.99203 5.04446 5.08673
5.20898 5.27104 5.32893 5.40762 5.44433 5.52231 5.91114 6.07369
6.19608 6.31158 6.62136 6.63931 7.13810 7.35717 7.57491 8.14216
8.71151
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.036464 B = 0.001395 C = 0.001381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 767.695179 B =20070.883099 C =20266.379507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.403 6.403
3 C 0.090 3.910
4 H 0.053 0.947
5 C -0.168 4.168
6 C -0.135 4.135
7 C 0.505 3.495
8 O -0.584 6.584
9 N -0.721 5.721
10 C 0.122 3.878
11 C -0.103 4.103
12 C -0.084 4.084
13 H 0.081 0.919
14 C -0.129 4.129
15 C 0.057 3.943
16 N -0.534 5.534
17 C 0.056 3.944
18 C 0.439 3.561
19 O -0.618 6.618
20 N -0.575 5.575
21 C -0.335 4.335
22 H 0.076 0.924
23 C -0.011 4.011
24 N -0.920 5.920
25 Si 0.992 3.008
26 H -0.269 1.269
27 H -0.273 1.273
28 H -0.273 1.273
29 C 0.048 3.952
30 H 0.086 0.914
31 H 0.030 0.970
32 H 0.053 0.947
33 H 0.069 0.931
34 H 0.057 0.943
35 H 0.086 0.914
36 H 0.139 0.861
37 H 0.119 0.881
38 H 0.417 0.583
39 H 0.050 0.950
40 H 0.054 0.946
41 H 0.085 0.915
42 H 0.092 0.908
43 H 0.076 0.924
44 H 0.079 0.921
45 H 0.049 0.951
46 H 0.031 0.969
47 H 0.069 0.931
48 H 0.110 0.890
49 H 0.396 0.604
50 H 0.278 0.722
51 H 0.066 0.934
52 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.497 -0.323 -33.000 33.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.322 6.322
3 C 0.032 3.968
4 H 0.071 0.929
5 C -0.225 4.225
6 C -0.174 4.174
7 C 0.293 3.707
8 O -0.463 6.463
9 N -0.374 5.374
10 C -0.002 4.002
11 C -0.141 4.141
12 C -0.104 4.104
13 H 0.099 0.901
14 C -0.168 4.168
15 C -0.071 4.071
16 N -0.259 5.259
17 C -0.076 4.076
18 C 0.226 3.774
19 O -0.504 6.504
20 N -0.213 5.213
21 C -0.465 4.465
22 H 0.094 0.906
23 C -0.211 4.211
24 N -0.561 5.561
25 Si 0.815 3.185
26 H -0.193 1.193
27 H -0.198 1.198
28 H -0.198 1.198
29 C -0.079 4.079
30 H 0.105 0.895
31 H 0.049 0.951
32 H 0.072 0.928
33 H 0.088 0.912
34 H 0.076 0.924
35 H 0.105 0.895
36 H 0.157 0.843
37 H 0.137 0.863
38 H 0.254 0.746
39 H 0.069 0.931
40 H 0.072 0.928
41 H 0.104 0.896
42 H 0.110 0.890
43 H 0.095 0.905
44 H 0.098 0.902
45 H 0.068 0.932
46 H 0.050 0.950
47 H 0.087 0.913
48 H 0.128 0.872
49 H 0.230 0.770
50 H 0.087 0.913
51 H 0.084 0.916
52 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -7.711 -1.352 -32.024 32.967
hybrid contribution 0.323 1.208 0.888 1.534
sum -7.388 -0.145 -31.136 32.000
Atomic orbital electron populations
1.22739 0.80480 1.02928 0.99816 1.87832 1.20609 1.28623 1.95164
1.21993 0.93842 0.84731 0.96234 0.92926 1.22249 1.02849 1.02692
0.94757 1.21943 0.98950 1.06752 0.89767 1.21228 0.84266 0.75787
0.89436 1.90694 1.25425 1.51270 1.78948 1.45938 1.10394 1.71620
1.09436 1.21243 0.98092 1.00149 0.80689 1.21602 0.95878 1.03951
0.92666 1.22152 0.95349 0.98791 0.94078 0.90080 1.22877 1.01053
0.99527 0.93328 1.22584 0.91617 0.95784 0.97119 1.63111 1.02017
1.45071 1.15669 1.21910 0.97053 0.98174 0.90415 1.20894 0.84540
0.82346 0.89627 1.90486 1.31470 1.49651 1.78800 1.41920 1.24825
1.47815 1.06731 1.19613 1.10274 1.33100 0.83482 0.90569 1.26004
0.94937 0.95597 1.04553 1.69663 1.13935 1.34579 1.37911 0.85010
0.78082 0.78510 0.76851 1.19299 1.19828 1.19813 1.23197 0.97245
1.02229 0.85198 0.89505 0.95129 0.92832 0.91237 0.92395 0.89504
0.84270 0.86304 0.74551 0.93107 0.92786 0.89612 0.88955 0.90490
0.90202 0.93238 0.95028 0.91338 0.87238 0.77014 0.91296 0.91553
0.89484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.58 10.82 113.37 1.23 1.81 16
2 O -0.40 -7.74 9.58 -135.20 -1.30 -9.03 16
3 C 0.09 1.20 2.27 30.59 0.07 1.27 16
4 H 0.05 0.84 7.60 -2.39 -0.02 0.82 16
5 C -0.17 -1.27 9.53 71.98 0.69 -0.58 16
6 C -0.13 -1.24 5.41 29.85 0.16 -1.08 16
7 C 0.50 8.65 7.71 87.66 0.68 9.32 16
8 O -0.58 -15.96 15.42 10.74 0.17 -15.80 16
9 N -0.72 -8.63 5.56 -463.06 -2.57 -11.20 16
10 C 0.12 1.87 5.52 86.38 0.48 2.34 16
11 C -0.10 -1.17 4.84 30.59 0.15 -1.02 16
12 C -0.08 -1.54 3.07 -9.40 -0.03 -1.57 16
13 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
14 C -0.13 -2.89 5.58 31.78 0.18 -2.71 16
15 C 0.06 1.87 5.65 86.64 0.49 2.36 16
16 N -0.53 -17.62 4.85 -890.09 -4.32 -21.94 16
17 C 0.06 1.97 5.03 85.56 0.43 2.40 16
18 C 0.44 21.55 7.43 87.66 0.65 22.20 16
19 O -0.62 -35.54 15.12 -3.05 -0.05 -35.59 16
20 N -0.58 -30.14 5.29 -306.98 -1.62 -31.76 16
21 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16
22 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16
23 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16
24 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16
25 Si 0.99 43.51 29.55 68.60 2.03 45.53 16
26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16
27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
29 C 0.05 1.05 6.15 86.77 0.53 1.58 16
30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.03 0.56 8.09 -2.39 -0.02 0.55 16
32 H 0.05 0.62 7.87 -2.39 -0.02 0.60 16
33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16
34 H 0.06 0.47 7.87 -2.39 -0.02 0.45 16
35 H 0.09 0.31 8.14 -2.39 -0.02 0.30 16
36 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16
37 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16
38 H 0.42 1.94 8.47 -92.71 -0.79 1.15 16
39 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16
40 H 0.05 1.01 7.51 -2.39 -0.02 0.99 16
41 H 0.09 0.78 8.11 -2.39 -0.02 0.77 16
42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
43 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16
44 H 0.08 1.56 8.01 -2.39 -0.02 1.54 16
45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
46 H 0.03 1.15 7.31 -2.39 -0.02 1.13 16
47 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16
48 H 0.11 3.36 8.07 -2.39 -0.02 3.34 16
49 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16
50 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16
51 H 0.07 1.19 7.70 -2.39 -0.02 1.17 16
52 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -80.43 421.41 -1.01 -81.44
By element:
Atomic # 1 Polarization: 31.01 SS G_CDS: -0.61 Total: 30.40 kcal
Atomic # 6 Polarization: 10.61 SS G_CDS: 6.98 Total: 17.59 kcal
Atomic # 7 Polarization: -106.32 SS G_CDS: -8.23 Total: -114.56 kcal
Atomic # 8 Polarization: -59.24 SS G_CDS: -1.18 Total: -60.42 kcal
Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal
Total: -80.43 -1.01 -81.44 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267554048.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.979 kcal
(2) G-P(sol) polarization free energy of solvation -80.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds