Wall clock time and date at job start Sat Apr 11 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1 6 6 C 1.46907 * 110.99776 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46914 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 5 10 10 C 1.37107 * 119.99906 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99254 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00293 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99998 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99599 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47280 * 90.00005 * 14 12 10 16 16 H 1.48505 * 109.47000 * 210.00048 * 14 12 10 17 17 H 1.48496 * 109.47304 * 329.99765 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 O 1.42899 * 109.47143 * 180.27800 * 21 19 18 23 23 C 1.42899 * 114.00265 * 179.97438 * 22 21 19 24 24 C 1.52993 * 109.47343 * 270.00118 * 23 22 21 25 25 C 1.53006 * 109.47236 * 179.97438 * 24 23 22 26 26 C 1.53007 * 109.46948 * 60.00052 * 25 24 23 27 27 C 1.52996 * 109.46807 * 300.00230 * 26 25 24 28 28 C 1.52997 * 109.47558 * 60.00317 * 27 26 25 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 33 33 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 34 34 H 1.00896 * 111.00427 * 56.05228 * 5 4 2 35 35 H 1.08998 * 109.46749 * 299.99469 * 6 5 4 36 36 H 1.08998 * 109.47510 * 59.99863 * 6 5 4 37 37 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 38 38 H 0.97004 * 119.99617 * 179.97438 * 13 12 10 39 39 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 41 41 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 42 42 H 1.08998 * 109.46957 * 30.00235 * 23 22 21 43 43 H 1.08998 * 109.47340 * 299.99441 * 24 23 22 44 44 H 1.09000 * 109.47181 * 60.00247 * 24 23 22 45 45 H 1.08998 * 109.47366 * 300.00301 * 25 24 23 46 46 H 1.09006 * 109.47367 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.46966 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.46883 * 59.99954 * 26 25 24 49 49 H 1.08998 * 109.47173 * 299.99546 * 27 26 25 50 50 H 1.09007 * 109.46594 * 179.97438 * 27 26 25 51 51 H 1.08997 * 109.47543 * 180.02562 * 28 27 26 52 52 H 1.08998 * 109.47508 * 59.99434 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0302 -1.5157 2.3765 7 6 5.5315 -1.6052 2.2805 8 8 6.1066 -1.1404 1.3191 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2831 3.1760 11 1 8.1129 -1.8698 2.3195 12 6 8.3264 -2.8978 4.1891 13 7 9.6355 -2.9759 4.1054 14 14 7.4408 -3.6131 5.6701 15 1 7.0905 -5.0308 5.4002 16 1 8.3268 -3.5400 6.8596 17 1 6.2011 -2.8373 5.9279 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 8 2.7084 0.1918 -4.6786 23 6 3.1804 -0.3824 -5.8990 24 6 4.7016 -0.2387 -5.9755 25 6 5.2070 -0.8542 -7.2820 26 6 4.5660 -0.1306 -8.4681 27 6 3.0448 -0.2743 -8.3914 28 6 2.5394 0.3411 -7.0851 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 1.7516 -0.1581 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9280 0.0826 1.0826 35 1 3.7556 -0.9585 3.2721 36 1 3.6094 -2.5197 2.4299 37 1 5.7754 -2.5726 4.0325 38 1 10.1420 -3.4047 4.8129 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 2.9132 -1.4387 -5.9307 43 1 4.9689 0.8175 -5.9439 44 1 5.1583 -0.7546 -5.1309 45 1 4.9398 -1.9104 -7.3134 46 1 6.2908 -0.7514 -7.3368 47 1 4.9264 -0.5687 -9.3988 48 1 4.8332 0.9257 -8.4367 49 1 2.7776 -1.3306 -8.4228 50 1 2.5881 0.2416 -9.2362 51 1 1.4557 0.2383 -7.0303 52 1 2.8066 1.3974 -7.0537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275215036.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:58 Heat of formation + Delta-G solvation = -135.939560 kcal Electronic energy + Delta-G solvation = -29565.540498 eV Core-core repulsion = 25371.257547 eV Total energy + Delta-G solvation = -4194.282951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03156 -39.17066 -38.49914 -36.94357 -36.22273 -34.34742 -33.73570 -31.71356 -31.45246 -31.07124 -30.12965 -27.79067 -27.45160 -25.04170 -23.19016 -22.90514 -22.48625 -21.58050 -20.57179 -20.09446 -19.40949 -18.39509 -17.44342 -17.09661 -16.39506 -16.10477 -15.89989 -15.64131 -15.15547 -14.92573 -14.72040 -14.63005 -14.38824 -14.06992 -13.96175 -13.84296 -13.39150 -13.24328 -13.21297 -12.76045 -12.69663 -12.61373 -12.48668 -12.29726 -12.25056 -12.09863 -11.74996 -11.71134 -11.43136 -11.32156 -11.18856 -11.00955 -10.90437 -10.80702 -10.62476 -10.58243 -10.00400 -9.74963 -9.64486 -9.60242 -9.07348 -8.64066 -8.25175 -8.19730 -6.33716 -3.85339 2.62482 2.75218 2.99611 3.03996 3.12554 3.70380 3.76208 4.00536 4.07803 4.40946 4.43670 4.63728 4.67895 4.74621 4.80407 4.87940 4.91376 4.96864 5.01299 5.03951 5.12754 5.17288 5.19514 5.20958 5.23404 5.31366 5.36080 5.49559 5.50145 5.52706 5.58022 5.68091 5.72873 5.75314 5.81678 5.86203 5.88108 5.88187 5.92742 6.01172 6.02372 6.11615 6.45944 6.94355 6.99295 7.46972 7.53896 7.55381 8.11623 8.26038 8.56762 8.92229 9.39484 9.79505 10.79366 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.002093 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.707522 B =13372.307691 C =15648.131370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.087 0.913 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.564 6.564 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.881 3.119 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.708 5.708 19 C 0.518 3.482 20 O -0.528 6.528 21 C 0.044 3.956 22 O -0.357 6.357 23 C 0.090 3.910 24 C -0.145 4.145 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.115 4.115 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.353 0.647 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.405 0.595 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.323 0.899 -16.632 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.361 5.361 19 C 0.303 3.697 20 O -0.404 6.404 21 C -0.036 4.036 22 O -0.275 6.275 23 C 0.032 3.968 24 C -0.182 4.182 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.153 4.153 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.173 0.827 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.240 0.760 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.973 1.642 -17.603 25.933 hybrid contribution -0.340 -0.796 2.149 2.317 sum -19.313 0.845 -15.454 24.749 Atomic orbital electron populations 1.22143 0.94956 1.02213 1.02702 1.20924 0.93584 0.97540 0.83741 0.89500 1.22319 0.89348 1.00743 0.95782 1.60055 1.03201 1.27105 1.39660 1.21712 0.95059 1.00022 0.91695 1.19704 0.87944 0.84147 0.84768 1.90576 1.70982 1.50403 1.32584 1.42210 1.07880 1.53082 1.19818 1.19429 0.79570 1.35990 1.08402 0.86301 1.25049 0.95453 0.97665 0.98057 1.69623 1.05077 1.43241 1.34120 0.86659 0.79607 0.79977 0.83040 1.19606 1.20185 1.19562 1.45692 1.67300 1.14437 1.08652 1.20173 0.77893 0.87397 0.84257 1.90709 1.49126 1.15688 1.84840 1.22239 1.01875 0.92414 0.87118 1.88031 1.86490 1.35416 1.17604 1.22176 0.93461 0.96866 0.84297 1.22070 0.95572 1.02568 0.98038 1.21501 1.00333 0.99633 0.94024 1.21587 0.95238 1.01081 0.98167 1.21507 0.95906 1.01051 0.96886 1.21575 1.00334 1.00813 0.92581 0.91818 0.92311 0.91591 0.93792 0.90393 0.82728 0.93704 0.89462 0.79710 0.91595 0.75973 0.89874 0.90630 0.92161 0.90846 0.91447 0.91933 0.91491 0.91893 0.91727 0.91895 0.91452 0.91340 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.06 16 2 C 0.15 1.56 2.81 -67.93 -0.19 1.37 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 4 C 0.05 0.49 5.24 -3.82 -0.02 0.47 16 5 N -0.67 -9.45 5.85 -115.05 -0.67 -10.13 16 6 C 0.05 0.74 6.17 -4.97 -0.03 0.71 16 7 C 0.45 9.88 7.82 -10.99 -0.09 9.80 16 8 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 9 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 10 C -0.31 -8.54 10.16 -14.93 -0.15 -8.70 16 11 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 13 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 14 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 18 N -0.71 -7.73 4.80 -53.80 -0.26 -7.99 16 19 C 0.52 6.87 7.87 -10.98 -0.09 6.78 16 20 O -0.53 -9.20 16.16 -14.36 -0.23 -9.43 16 21 C 0.04 0.47 6.23 36.01 0.22 0.69 16 22 O -0.36 -4.54 9.52 -55.14 -0.53 -5.07 16 23 C 0.09 0.86 2.61 -26.73 -0.07 0.79 16 24 C -0.14 -1.37 5.54 -26.73 -0.15 -1.51 16 25 C -0.12 -0.89 5.92 -26.72 -0.16 -1.05 16 26 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 27 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 28 C -0.12 -0.98 5.57 -26.73 -0.15 -1.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.41 3.78 8.60 -40.82 -0.35 3.43 16 40 H 0.08 0.84 7.87 -51.92 -0.41 0.43 16 41 H 0.08 0.59 8.09 -51.93 -0.42 0.18 16 42 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 420.36 15.07 6.33 6.33 Total: -1.00 -35.14 420.36 -9.46 -44.60 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -9.27 Total: 14.42 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.93 Total: 6.26 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.21 Total: -56.72 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.67 Total: -29.27 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.14 -9.46 -44.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275215036.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.335 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds