Wall clock time and date at job start Sat Apr 11 2020 06:26:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.09001 * 109.46796 * 2 1
4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3
5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1
6 6 C 1.46907 * 110.99776 * 180.02562 * 5 4 2
7 7 C 1.50699 * 109.46914 * 179.97438 * 6 5 4
8 8 O 1.21291 * 120.00563 * 0.02562 * 7 6 5
9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 5
10 10 C 1.37107 * 119.99906 * 179.97438 * 9 7 6
11 11 H 1.08004 * 119.99254 * 0.02562 * 10 9 7
12 12 C 1.38948 * 120.00293 * 180.02562 * 10 9 7
13 13 N 1.31408 * 119.99998 * 180.02562 * 12 10 9
14 14 Si 1.86800 * 119.99599 * 0.02562 * 12 10 9
15 15 H 1.48500 * 109.47280 * 90.00005 * 14 12 10
16 16 H 1.48505 * 109.47000 * 210.00048 * 14 12 10
17 17 H 1.48496 * 109.47304 * 329.99765 * 14 12 10
18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3
19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1
20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2
21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2
22 22 O 1.42899 * 109.47143 * 180.27800 * 21 19 18
23 23 C 1.42899 * 114.00265 * 179.97438 * 22 21 19
24 24 C 1.52993 * 109.47343 * 270.00118 * 23 22 21
25 25 C 1.53006 * 109.47236 * 179.97438 * 24 23 22
26 26 C 1.53007 * 109.46948 * 60.00052 * 25 24 23
27 27 C 1.52996 * 109.46807 * 300.00230 * 26 25 24
28 28 C 1.52997 * 109.47558 * 60.00317 * 27 26 25
29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3
30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3
31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3
32 32 H 1.08995 * 109.47553 * 294.99926 * 4 2 1
33 33 H 1.08998 * 109.47075 * 55.00372 * 4 2 1
34 34 H 1.00896 * 111.00427 * 56.05228 * 5 4 2
35 35 H 1.08998 * 109.46749 * 299.99469 * 6 5 4
36 36 H 1.08998 * 109.47510 * 59.99863 * 6 5 4
37 37 H 0.96996 * 120.00640 * 0.02562 * 9 7 6
38 38 H 0.97004 * 119.99617 * 179.97438 * 13 12 10
39 39 H 0.97000 * 120.00580 * 265.00723 * 18 2 1
40 40 H 1.09009 * 109.47352 * 300.27556 * 21 19 18
41 41 H 1.08998 * 109.47585 * 60.27844 * 21 19 18
42 42 H 1.08998 * 109.46957 * 30.00235 * 23 22 21
43 43 H 1.08998 * 109.47340 * 299.99441 * 24 23 22
44 44 H 1.09000 * 109.47181 * 60.00247 * 24 23 22
45 45 H 1.08998 * 109.47366 * 300.00301 * 25 24 23
46 46 H 1.09006 * 109.47367 * 179.97438 * 25 24 23
47 47 H 1.08994 * 109.46966 * 179.97438 * 26 25 24
48 48 H 1.08998 * 109.46883 * 59.99954 * 26 25 24
49 49 H 1.08998 * 109.47173 * 299.99546 * 27 26 25
50 50 H 1.09007 * 109.46594 * 179.97438 * 27 26 25
51 51 H 1.08997 * 109.47543 * 180.02562 * 28 27 26
52 52 H 1.08998 * 109.47508 * 59.99434 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7211 1.2494
5 7 3.5040 -0.8265 1.1906
6 6 4.0302 -1.5157 2.3765
7 6 5.5315 -1.6052 2.2805
8 8 6.1066 -1.1404 1.3191
9 7 6.2351 -2.2011 3.2635
10 6 7.6010 -2.2831 3.1760
11 1 8.1129 -1.8698 2.3195
12 6 8.3264 -2.8978 4.1891
13 7 9.6355 -2.9759 4.1054
14 14 7.4408 -3.6131 5.6701
15 1 7.0905 -5.0308 5.4002
16 1 8.3268 -3.5400 6.8596
17 1 6.2011 -2.8373 5.9279
18 7 2.0185 -0.6908 -1.1960
19 6 2.1472 -0.0185 -2.3570
20 8 1.8591 1.1584 -2.4116
21 6 2.6554 -0.7275 -3.5859
22 8 2.7084 0.1918 -4.6786
23 6 3.1804 -0.3824 -5.8990
24 6 4.7016 -0.2387 -5.9755
25 6 5.2070 -0.8542 -7.2820
26 6 4.5660 -0.1306 -8.4681
27 6 3.0448 -0.2743 -8.3914
28 6 2.5394 0.3411 -7.0851
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5140 0.8898
32 1 1.7516 -0.1581 2.1370
33 1 1.6053 -1.7197 1.2953
34 1 3.9280 0.0826 1.0826
35 1 3.7556 -0.9585 3.2721
36 1 3.6094 -2.5197 2.4299
37 1 5.7754 -2.5726 4.0325
38 1 10.1420 -3.4047 4.8129
39 1 2.2491 -1.6319 -1.1524
40 1 3.6539 -1.1197 -3.3923
41 1 1.9842 -1.5494 -3.8349
42 1 2.9132 -1.4387 -5.9307
43 1 4.9689 0.8175 -5.9439
44 1 5.1583 -0.7546 -5.1309
45 1 4.9398 -1.9104 -7.3134
46 1 6.2908 -0.7514 -7.3368
47 1 4.9264 -0.5687 -9.3988
48 1 4.8332 0.9257 -8.4367
49 1 2.7776 -1.3306 -8.4228
50 1 2.5881 0.2416 -9.2362
51 1 1.4557 0.2383 -7.0303
52 1 2.8066 1.3974 -7.0537
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001275215036.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:26:58
Heat of formation + Delta-G solvation = -163.183135 kcal
Electronic energy + Delta-G solvation = -29566.721868 eV
Core-core repulsion = 25371.257547 eV
Total energy + Delta-G solvation = -4195.464321 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.99576 -40.29268 -39.91111 -37.91041 -37.12333 -36.05597 -35.12869 -33.73666
-32.40698 -31.72736 -30.83995 -29.09223 -28.29480 -26.60590 -24.50041 -23.56513
-23.17256 -22.44544 -21.53733 -21.24748 -20.77347 -20.25306 -18.37454 -18.16972
-17.54088 -17.28313 -16.94303 -16.79764 -16.51073 -16.15006 -15.78919 -15.51934
-15.34781 -15.20722 -14.97539 -14.80101 -14.67854 -14.56910 -14.26685 -14.06986
-13.93736 -13.57262 -13.38111 -13.17293 -13.13288 -13.05985 -12.98384 -12.79628
-12.68537 -12.40700 -12.08620 -11.99834 -11.97980 -11.83881 -11.52068 -11.50487
-11.47536 -11.26585 -10.80277 -10.44744 -10.43319 -10.24328 -10.01699 -9.34750
-8.40897 -6.02015 1.30672 1.36607 1.45464 1.61565 1.89231 1.97471
2.23708 2.71226 2.97988 3.15560 3.40146 3.71499 3.76935 3.81415
3.90475 4.05158 4.12667 4.17286 4.20180 4.24580 4.27334 4.34060
4.35545 4.39590 4.49214 4.54354 4.56348 4.58858 4.65966 4.67211
4.78024 4.80459 4.93343 5.01593 5.06975 5.10789 5.21104 5.22045
5.28781 5.29725 5.37469 5.49211 5.52761 5.56828 5.89978 6.03656
6.15768 6.28983 6.60223 6.63518 6.89029 7.30196 7.40804 7.98183
8.76848
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.010843 B = 0.002093 C = 0.001789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.707522 B =13372.307691 C =15648.131370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.144 3.856
3 H 0.058 0.942
4 C 0.056 3.944
5 N -0.684 5.684
6 C 0.063 3.937
7 C 0.447 3.553
8 O -0.616 6.616
9 N -0.591 5.591
10 C -0.328 4.328
11 H 0.053 0.947
12 C -0.018 4.018
13 N -0.936 5.936
14 Si 0.968 3.032
15 H -0.255 1.255
16 H -0.278 1.278
17 H -0.230 1.230
18 N -0.696 5.696
19 C 0.510 3.490
20 O -0.579 6.579
21 C 0.044 3.956
22 O -0.389 6.389
23 C 0.086 3.914
24 C -0.145 4.145
25 C -0.115 4.115
26 C -0.123 4.123
27 C -0.110 4.110
28 C -0.115 4.115
29 H 0.041 0.959
30 H 0.078 0.922
31 H 0.082 0.918
32 H 0.064 0.936
33 H 0.104 0.896
34 H 0.339 0.661
35 H 0.077 0.923
36 H 0.123 0.877
37 H 0.390 0.610
38 H 0.279 0.721
39 H 0.416 0.584
40 H 0.088 0.912
41 H 0.111 0.889
42 H 0.081 0.919
43 H 0.053 0.947
44 H 0.057 0.943
45 H 0.074 0.926
46 H 0.066 0.934
47 H 0.078 0.922
48 H 0.055 0.945
49 H 0.075 0.925
50 H 0.078 0.922
51 H 0.070 0.930
52 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.750 -1.500 -15.150 27.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.039 3.961
3 H 0.076 0.924
4 C -0.073 4.073
5 N -0.315 5.315
6 C -0.069 4.069
7 C 0.235 3.765
8 O -0.500 6.500
9 N -0.233 5.233
10 C -0.457 4.457
11 H 0.071 0.929
12 C -0.217 4.217
13 N -0.577 5.577
14 Si 0.787 3.213
15 H -0.180 1.180
16 H -0.203 1.203
17 H -0.153 1.153
18 N -0.349 5.349
19 C 0.297 3.703
20 O -0.459 6.459
21 C -0.035 4.035
22 O -0.308 6.308
23 C 0.029 3.971
24 C -0.183 4.183
25 C -0.152 4.152
26 C -0.160 4.160
27 C -0.148 4.148
28 C -0.152 4.152
29 H 0.060 0.940
30 H 0.097 0.903
31 H 0.100 0.900
32 H 0.082 0.918
33 H 0.123 0.877
34 H 0.156 0.844
35 H 0.094 0.906
36 H 0.140 0.860
37 H 0.226 0.774
38 H 0.088 0.912
39 H 0.252 0.748
40 H 0.106 0.894
41 H 0.128 0.872
42 H 0.098 0.902
43 H 0.071 0.929
44 H 0.076 0.924
45 H 0.092 0.908
46 H 0.084 0.916
47 H 0.096 0.904
48 H 0.074 0.926
49 H 0.094 0.906
50 H 0.097 0.903
51 H 0.088 0.912
52 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -22.439 -0.791 -16.111 27.635
hybrid contribution 0.781 0.021 1.585 1.767
sum -21.658 -0.770 -14.527 26.090
Atomic orbital electron populations
1.22053 0.93084 1.03419 1.02473 1.20989 0.94942 0.96189 0.83930
0.92414 1.22380 0.86575 1.02419 0.95880 1.60068 1.05556 1.26367
1.39555 1.21648 0.89200 1.02655 0.93371 1.21095 0.90943 0.81450
0.83049 1.90560 1.73017 1.51889 1.34576 1.42031 1.06062 1.54011
1.21185 1.18989 0.82068 1.37369 1.07320 0.92918 1.26165 0.96218
0.97358 1.01912 1.69815 1.07571 1.44416 1.35855 0.85329 0.79395
0.79782 0.76757 1.17983 1.20290 1.15295 1.45686 1.66205 1.14785
1.08224 1.20697 0.77212 0.86937 0.85462 1.90680 1.51638 1.17868
1.85713 1.22347 1.02760 0.92569 0.85869 1.88005 1.86834 1.37104
1.18875 1.22363 0.93233 0.97967 0.83537 1.22064 0.95929 1.01357
0.98947 1.21498 1.00326 1.00198 0.93184 1.21596 0.95459 1.00609
0.98375 1.21495 0.95591 1.01738 0.95954 1.21594 1.00426 0.99918
0.93311 0.93966 0.90282 0.89951 0.91796 0.87748 0.84357 0.90554
0.85959 0.77404 0.91190 0.74767 0.89443 0.87153 0.90150 0.92853
0.92431 0.90752 0.91567 0.90357 0.92569 0.90643 0.90334 0.91175
0.92626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.32 9.48 71.98 0.68 -1.64 16
2 C 0.14 2.85 2.81 45.00 0.13 2.98 16
3 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16
4 C 0.06 0.94 5.24 86.30 0.45 1.39 16
5 N -0.68 -17.83 5.85 -517.92 -3.03 -20.85 16
6 C 0.06 1.72 6.17 85.56 0.53 2.24 16
7 C 0.45 19.36 7.82 87.66 0.69 20.05 16
8 O -0.62 -33.61 15.78 -3.07 -0.05 -33.66 16
9 N -0.59 -27.02 5.09 -306.98 -1.56 -28.58 16
10 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16
11 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16
12 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16
13 N -0.94 -56.25 13.96 21.66 0.30 -55.95 16
14 Si 0.97 37.94 27.74 68.60 1.90 39.85 16
15 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16
16 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16
17 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16
18 N -0.70 -14.54 4.80 -442.52 -2.12 -16.67 16
19 C 0.51 13.76 7.87 87.66 0.69 14.45 16
20 O -0.58 -21.20 16.16 16.00 0.26 -20.94 16
21 C 0.04 0.94 6.23 71.24 0.44 1.38 16
22 O -0.39 -10.20 9.52 -129.94 -1.24 -11.44 16
23 C 0.09 1.64 2.61 30.59 0.08 1.72 16
24 C -0.14 -2.85 5.54 30.59 0.17 -2.68 16
25 C -0.11 -1.68 5.92 30.60 0.18 -1.49 16
26 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16
27 C -0.11 -1.30 5.92 30.59 0.18 -1.12 16
28 C -0.11 -1.93 5.57 30.60 0.17 -1.76 16
29 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16
30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.34 10.59 8.43 -89.70 -0.76 9.83 16
35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16
36 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16
37 H 0.39 14.52 5.76 -92.71 -0.53 13.99 16
38 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16
39 H 0.42 6.92 8.60 -92.71 -0.80 6.12 16
40 H 0.09 1.77 7.87 -2.38 -0.02 1.75 16
41 H 0.11 1.53 8.09 -2.39 -0.02 1.52 16
42 H 0.08 1.18 7.79 -2.39 -0.02 1.16 16
43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
44 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16
45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
46 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16
47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
50 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16
51 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
52 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16
Total: -1.00 -85.20 420.36 -0.87 -86.07
By element:
Atomic # 1 Polarization: 47.95 SS G_CDS: -1.22 Total: 46.73 kcal
Atomic # 6 Polarization: 9.55 SS G_CDS: 5.89 Total: 15.44 kcal
Atomic # 7 Polarization: -115.64 SS G_CDS: -6.41 Total: -122.05 kcal
Atomic # 8 Polarization: -65.01 SS G_CDS: -1.03 Total: -66.03 kcal
Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.85 kcal
Total: -85.20 -0.87 -86.07 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275215036.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.116 kcal
(2) G-P(sol) polarization free energy of solvation -85.199 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.067 kcal
(6) G-S(sol) free energy of system = (1) + (5) -163.183 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds