Wall clock time and date at job start Sat Apr 11 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46888 * 2 1 4 4 C 1.52996 * 109.47012 * 119.99916 * 2 1 3 5 5 N 1.46897 * 109.47322 * 294.99599 * 4 2 1 6 6 C 1.47014 * 111.00378 * 293.64264 * 5 4 2 7 7 C 1.53098 * 109.26097 * 177.60885 * 6 5 4 8 8 O 1.43009 * 109.26077 * 56.83959 * 7 6 5 9 9 C 1.43011 * 113.74132 * 301.33703 * 8 7 6 10 10 C 1.47010 * 111.00406 * 170.00088 * 5 4 2 11 11 C 1.50697 * 109.46916 * 239.99690 * 2 1 3 12 12 O 1.21276 * 120.00471 * 239.99429 * 11 2 1 13 13 N 1.34779 * 119.99851 * 60.00228 * 11 2 1 14 14 C 1.46499 * 119.99916 * 179.97438 * 13 11 2 15 15 C 1.53006 * 109.47155 * 180.02562 * 14 13 11 16 16 O 1.42893 * 110.64166 * 66.68766 * 15 14 13 17 17 C 1.55157 * 110.71787 * 190.02670 * 15 14 13 18 18 C 1.54913 * 101.58038 * 153.86386 * 17 15 14 19 19 N 1.47425 * 104.83172 * 322.98898 * 18 17 15 20 20 C 1.36934 * 125.64598 * 204.16741 * 19 18 17 21 21 H 1.08007 * 119.99929 * 179.97438 * 20 19 18 22 22 C 1.38807 * 120.00235 * 359.95374 * 20 19 18 23 23 N 1.31624 * 120.00298 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00223 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46680 * 59.99987 * 24 22 20 26 26 H 1.48499 * 109.47210 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46938 * 300.00353 * 24 22 20 28 28 C 1.47016 * 108.70144 * 24.12623 * 19 18 17 29 29 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47117 * 299.99857 * 1 2 3 31 31 H 1.09002 * 109.47116 * 60.00165 * 1 2 3 32 32 H 1.08994 * 109.47358 * 55.00215 * 4 2 1 33 33 H 1.09007 * 109.46678 * 174.99994 * 4 2 1 34 34 H 1.09011 * 109.50251 * 297.53731 * 6 5 4 35 35 H 1.09000 * 109.50902 * 57.66772 * 6 5 4 36 36 H 1.09007 * 109.50146 * 296.90794 * 7 6 5 37 37 H 1.09001 * 109.54297 * 176.80455 * 7 6 5 38 38 H 1.08999 * 109.50380 * 298.73007 * 9 8 7 39 39 H 1.09003 * 109.50672 * 178.60731 * 9 8 7 40 40 H 1.09004 * 109.50471 * 302.33627 * 10 5 4 41 41 H 1.09004 * 109.50479 * 62.45572 * 10 5 4 42 42 H 0.96995 * 120.00226 * 359.97438 * 13 11 2 43 43 H 1.09000 * 109.47387 * 59.99782 * 14 13 11 44 44 H 1.09005 * 109.47456 * 299.99839 * 14 13 11 45 45 H 0.96699 * 114.00120 * 300.69790 * 16 15 14 46 46 H 1.09005 * 111.00262 * 271.93496 * 17 15 14 47 47 H 1.08993 * 111.01062 * 35.78843 * 17 15 14 48 48 H 1.08996 * 110.36871 * 204.14723 * 18 17 15 49 49 H 1.08998 * 110.36705 * 81.82672 * 18 17 15 50 50 H 0.96994 * 120.00345 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.88603 * 239.52323 * 28 19 18 52 52 H 1.09004 * 109.88125 * 118.36278 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6515 0.0375 2.4456 6 6 2.3404 1.3353 2.4933 7 6 1.8628 2.1158 3.7207 8 8 2.0961 1.3354 4.8962 9 6 1.4394 0.0651 4.8836 10 6 1.9127 -0.7362 3.6681 11 6 2.0323 -0.7105 -1.2304 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2500 -2.4545 14 6 2.1954 -0.9403 -3.6507 15 6 1.6859 -0.2188 -4.9000 16 8 2.2712 1.0805 -5.0053 17 6 1.9707 -1.0584 -6.1733 18 6 0.8557 -0.5633 -7.1281 19 7 -0.3187 -0.3560 -6.2613 20 6 -1.6256 -0.3768 -6.6697 21 1 -2.4177 -0.2134 -5.9539 22 6 -1.9323 -0.6075 -8.0037 23 7 -0.9670 -0.8068 -8.8761 24 14 -3.7151 -0.6352 -8.5610 25 1 -4.3451 0.6777 -8.2698 26 1 -3.7733 -0.8999 -10.0210 27 1 -4.4441 -1.7059 -7.8348 28 6 0.1456 -0.1243 -4.8858 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2952 33 1 3.1264 -0.7994 1.2055 34 1 3.4164 1.1740 2.5607 35 1 2.1125 1.9018 1.5904 36 1 0.7968 2.3238 3.6276 37 1 2.4119 3.0547 3.7922 38 1 0.3611 0.2134 4.8244 39 1 1.6828 -0.4796 5.7959 40 1 1.3726 -1.6819 3.6226 41 1 2.9818 -0.9307 3.7542 42 1 1.1488 0.5384 -2.5436 43 1 1.8325 -1.9682 -3.6508 44 1 3.2855 -0.9400 -3.6506 45 1 2.0880 1.6567 -4.2507 46 1 2.9583 -0.8339 -6.5764 47 1 1.8664 -2.1241 -5.9702 48 1 0.6407 -1.3185 -7.8841 49 1 1.1490 0.3743 -7.6001 50 1 -1.1813 -0.9676 -9.8082 51 1 -0.2664 -0.8847 -4.2223 52 1 -0.1619 0.8671 -4.5528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278820878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:13 Heat of formation + Delta-G solvation = -97.060987 kcal Electronic energy + Delta-G solvation = -30864.999677 eV Core-core repulsion = 26672.402627 eV Total energy + Delta-G solvation = -4192.597050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.45289 -39.71213 -38.56519 -36.54802 -35.16598 -34.29288 -33.32075 -32.07984 -31.57126 -29.64076 -28.52013 -27.93094 -25.88675 -25.40540 -24.46109 -23.84426 -22.41039 -20.87019 -20.41358 -19.94799 -19.72784 -17.85374 -16.99769 -16.87941 -16.50319 -16.11001 -15.89840 -15.82579 -15.48162 -15.24138 -14.95838 -14.75734 -14.39905 -14.33256 -13.83974 -13.79304 -13.48365 -13.22597 -13.00356 -12.95387 -12.55615 -12.36009 -12.21057 -12.12524 -11.97425 -11.78449 -11.61554 -11.52825 -11.14956 -11.07194 -10.89682 -10.88943 -10.80352 -10.39050 -10.20174 -10.10799 -10.07775 -9.74662 -9.72818 -9.43557 -9.11567 -8.79515 -8.68020 -6.89432 -5.69170 -3.11872 2.55195 2.93406 3.37739 3.41586 3.42103 3.43480 3.54213 4.32409 4.41533 4.44149 4.48125 4.51045 4.62179 4.70898 4.74472 4.82004 4.87043 4.90464 5.01345 5.15498 5.16101 5.24150 5.35456 5.37621 5.38440 5.43635 5.45898 5.46516 5.58822 5.60186 5.65159 5.75367 5.85810 5.94965 6.03429 6.20011 6.30692 6.36803 6.46467 6.51931 6.52603 6.56229 6.59620 6.72787 7.37827 7.52516 7.57272 7.80919 7.89951 8.12285 8.31157 9.16934 9.77445 10.41654 11.34447 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002103 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.630741 B =13314.046510 C =14047.763689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 H 0.096 0.904 4 C 0.075 3.925 5 N -0.535 5.535 6 C 0.012 3.988 7 C 0.064 3.936 8 O -0.387 6.387 9 C 0.064 3.936 10 C 0.018 3.982 11 C 0.518 3.482 12 O -0.544 6.544 13 N -0.725 5.725 14 C 0.104 3.896 15 C 0.105 3.895 16 O -0.543 6.543 17 C -0.128 4.128 18 C 0.156 3.844 19 N -0.599 5.599 20 C -0.227 4.227 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.916 3.084 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.285 1.285 28 C 0.117 3.883 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.399 0.601 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.364 0.636 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.018 0.982 50 H 0.254 0.746 51 H 0.031 0.969 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 3.772 24.203 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.114 0.886 4 C -0.052 4.052 5 N -0.260 5.260 6 C -0.117 4.117 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.110 4.110 11 C 0.304 3.696 12 O -0.421 6.421 13 N -0.376 5.376 14 C -0.020 4.020 15 C 0.064 3.936 16 O -0.347 6.347 17 C -0.167 4.167 18 C 0.031 3.969 19 N -0.325 5.325 20 C -0.355 4.355 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.746 3.254 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.234 0.766 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.210 0.790 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.126 0.874 49 H 0.036 0.964 50 H 0.064 0.936 51 H 0.048 0.952 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.797 2.921 23.615 24.746 hybrid contribution -0.661 0.411 -0.089 0.784 sum 6.136 3.333 23.525 24.540 Atomic orbital electron populations 1.21692 0.91785 1.02998 1.02901 1.21278 0.98748 1.00561 0.92289 0.88584 1.21869 0.98962 0.97000 0.87413 1.62163 1.57782 1.03913 1.02133 1.22881 0.97049 0.91750 0.99973 1.22668 1.01038 0.93822 0.83764 1.87987 1.73077 1.29499 1.40015 1.22667 0.97054 0.84100 0.97457 1.22774 1.00257 0.97721 0.90247 1.20549 0.79909 0.84575 0.84614 1.90700 1.38103 1.26394 1.86900 1.46018 1.53569 1.32259 1.05803 1.22095 0.99657 0.97163 0.83091 1.22560 0.93136 0.83593 0.94348 1.86628 1.76643 1.24440 1.47037 1.23055 1.01388 0.97845 0.94421 1.21948 0.82538 1.00054 0.92344 1.44400 1.02650 1.83798 1.01701 1.19001 0.81663 1.41932 0.92872 0.90583 1.24804 0.97873 1.02042 0.95808 1.69778 1.29508 1.55140 1.02421 0.86135 0.83808 0.77846 0.77576 1.21190 1.21504 1.21123 1.21908 0.91119 0.97867 0.90102 0.92174 0.90375 0.92340 0.89713 0.93619 0.93800 0.89318 0.92128 0.88457 0.92140 0.88462 0.89394 0.93810 0.76594 0.90319 0.90790 0.78995 0.91084 0.90594 0.87404 0.96371 0.93562 0.95158 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.98 37.16 0.33 -0.80 16 2 C -0.11 -0.96 2.65 -91.77 -0.24 -1.20 16 3 H 0.10 0.70 6.30 -51.93 -0.33 0.37 16 4 C 0.08 0.70 3.69 -3.83 -0.01 0.69 16 5 N -0.53 -4.25 4.18 -234.31 -0.98 -5.23 16 6 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 7 C 0.06 0.44 7.01 37.21 0.26 0.70 16 8 O -0.39 -3.39 10.83 -35.23 -0.38 -3.77 16 9 C 0.06 0.44 7.01 37.20 0.26 0.70 16 10 C 0.02 0.13 5.64 -3.72 -0.02 0.11 16 11 C 0.52 6.38 7.15 -10.99 -0.08 6.30 16 12 O -0.54 -8.75 15.92 5.56 0.09 -8.66 16 13 N -0.72 -8.53 5.02 -60.29 -0.30 -8.83 16 14 C 0.10 1.49 4.80 -4.04 -0.02 1.47 16 15 C 0.11 1.76 0.93 -88.78 -0.08 1.67 16 16 O -0.54 -8.81 13.10 -35.23 -0.46 -9.27 16 17 C -0.13 -2.43 6.26 -24.58 -0.15 -2.59 16 18 C 0.16 3.80 5.88 -2.53 -0.01 3.78 16 19 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 20 C -0.23 -6.23 10.27 -15.06 -0.15 -6.38 16 21 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 24 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.12 2.29 5.76 -3.07 -0.02 2.27 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 32 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 33 H 0.05 0.49 7.93 -51.92 -0.41 0.08 16 34 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.09 0.54 6.29 -51.93 -0.33 0.21 16 36 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.40 3.92 6.89 -40.82 -0.28 3.64 16 43 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.36 4.31 8.44 45.56 0.38 4.69 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 48 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 52 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -33.48 403.00 -9.40 -42.88 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.33 Total: 5.35 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.06 Total: 6.42 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -1.30 Total: -55.83 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.75 Total: -21.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.48 -9.40 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278820878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.185 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds