Wall clock time and date at job start Sat Apr 11 2020 06:26:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 109.46888 * 2 1
4 4 C 1.52996 * 109.47012 * 119.99916 * 2 1 3
5 5 N 1.46897 * 109.47322 * 294.99599 * 4 2 1
6 6 C 1.47014 * 111.00378 * 293.64264 * 5 4 2
7 7 C 1.53098 * 109.26097 * 177.60885 * 6 5 4
8 8 O 1.43009 * 109.26077 * 56.83959 * 7 6 5
9 9 C 1.43011 * 113.74132 * 301.33703 * 8 7 6
10 10 C 1.47010 * 111.00406 * 170.00088 * 5 4 2
11 11 C 1.50697 * 109.46916 * 239.99690 * 2 1 3
12 12 O 1.21276 * 120.00471 * 239.99429 * 11 2 1
13 13 N 1.34779 * 119.99851 * 60.00228 * 11 2 1
14 14 C 1.46499 * 119.99916 * 179.97438 * 13 11 2
15 15 C 1.53006 * 109.47155 * 180.02562 * 14 13 11
16 16 O 1.42893 * 110.64166 * 66.68766 * 15 14 13
17 17 C 1.55157 * 110.71787 * 190.02670 * 15 14 13
18 18 C 1.54913 * 101.58038 * 153.86386 * 17 15 14
19 19 N 1.47425 * 104.83172 * 322.98898 * 18 17 15
20 20 C 1.36934 * 125.64598 * 204.16741 * 19 18 17
21 21 H 1.08007 * 119.99929 * 179.97438 * 20 19 18
22 22 C 1.38807 * 120.00235 * 359.95374 * 20 19 18
23 23 N 1.31624 * 120.00298 * 0.02562 * 22 20 19
24 24 Si 1.86809 * 120.00223 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.46680 * 59.99987 * 24 22 20
26 26 H 1.48499 * 109.47210 * 180.02562 * 24 22 20
27 27 H 1.48502 * 109.46938 * 300.00353 * 24 22 20
28 28 C 1.47016 * 108.70144 * 24.12623 * 19 18 17
29 29 H 1.09000 * 109.46888 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47117 * 299.99857 * 1 2 3
31 31 H 1.09002 * 109.47116 * 60.00165 * 1 2 3
32 32 H 1.08994 * 109.47358 * 55.00215 * 4 2 1
33 33 H 1.09007 * 109.46678 * 174.99994 * 4 2 1
34 34 H 1.09011 * 109.50251 * 297.53731 * 6 5 4
35 35 H 1.09000 * 109.50902 * 57.66772 * 6 5 4
36 36 H 1.09007 * 109.50146 * 296.90794 * 7 6 5
37 37 H 1.09001 * 109.54297 * 176.80455 * 7 6 5
38 38 H 1.08999 * 109.50380 * 298.73007 * 9 8 7
39 39 H 1.09003 * 109.50672 * 178.60731 * 9 8 7
40 40 H 1.09004 * 109.50471 * 302.33627 * 10 5 4
41 41 H 1.09004 * 109.50479 * 62.45572 * 10 5 4
42 42 H 0.96995 * 120.00226 * 359.97438 * 13 11 2
43 43 H 1.09000 * 109.47387 * 59.99782 * 14 13 11
44 44 H 1.09005 * 109.47456 * 299.99839 * 14 13 11
45 45 H 0.96699 * 114.00120 * 300.69790 * 16 15 14
46 46 H 1.09005 * 111.00262 * 271.93496 * 17 15 14
47 47 H 1.08993 * 111.01062 * 35.78843 * 17 15 14
48 48 H 1.08996 * 110.36871 * 204.14723 * 18 17 15
49 49 H 1.08998 * 110.36705 * 81.82672 * 18 17 15
50 50 H 0.96994 * 120.00345 * 180.02562 * 23 22 20
51 51 H 1.09005 * 109.88603 * 239.52323 * 28 19 18
52 52 H 1.09004 * 109.88125 * 118.36278 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 7 1.6515 0.0375 2.4456
6 6 2.3404 1.3353 2.4933
7 6 1.8628 2.1158 3.7207
8 8 2.0961 1.3354 4.8962
9 6 1.4394 0.0651 4.8836
10 6 1.9127 -0.7362 3.6681
11 6 2.0323 -0.7105 -1.2304
12 8 2.7296 -1.6965 -1.1192
13 7 1.7067 -0.2500 -2.4545
14 6 2.1954 -0.9403 -3.6507
15 6 1.6859 -0.2188 -4.9000
16 8 2.2712 1.0805 -5.0053
17 6 1.9707 -1.0584 -6.1733
18 6 0.8557 -0.5633 -7.1281
19 7 -0.3187 -0.3560 -6.2613
20 6 -1.6256 -0.3768 -6.6697
21 1 -2.4177 -0.2134 -5.9539
22 6 -1.9323 -0.6075 -8.0037
23 7 -0.9670 -0.8068 -8.8761
24 14 -3.7151 -0.6352 -8.5610
25 1 -4.3451 0.6777 -8.2698
26 1 -3.7733 -0.8999 -10.0210
27 1 -4.4441 -1.7059 -7.8348
28 6 0.1456 -0.1243 -4.8858
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.6054 -1.7197 1.2952
33 1 3.1264 -0.7994 1.2055
34 1 3.4164 1.1740 2.5607
35 1 2.1125 1.9018 1.5904
36 1 0.7968 2.3238 3.6276
37 1 2.4119 3.0547 3.7922
38 1 0.3611 0.2134 4.8244
39 1 1.6828 -0.4796 5.7959
40 1 1.3726 -1.6819 3.6226
41 1 2.9818 -0.9307 3.7542
42 1 1.1488 0.5384 -2.5436
43 1 1.8325 -1.9682 -3.6508
44 1 3.2855 -0.9400 -3.6506
45 1 2.0880 1.6567 -4.2507
46 1 2.9583 -0.8339 -6.5764
47 1 1.8664 -2.1241 -5.9702
48 1 0.6407 -1.3185 -7.8841
49 1 1.1490 0.3743 -7.6001
50 1 -1.1813 -0.9676 -9.8082
51 1 -0.2664 -0.8847 -4.2223
52 1 -0.1619 0.8671 -4.5528
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001278820878.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:26:12
Heat of formation + Delta-G solvation = -124.122104 kcal
Electronic energy + Delta-G solvation = -30866.173135 eV
Core-core repulsion = 26672.402627 eV
Total energy + Delta-G solvation = -4193.770508 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.39793 -40.51954 -39.87238 -37.26972 -36.79149 -35.42527 -34.17236 -33.85130
-32.10690 -31.36189 -29.79599 -28.83064 -27.49862 -26.23234 -25.35331 -25.00866
-23.40561 -22.21290 -21.39499 -21.34305 -20.76825 -18.96906 -18.72289 -17.85609
-17.13946 -17.04283 -16.93245 -16.75446 -16.70707 -16.11506 -15.97556 -15.82965
-15.61403 -15.58686 -15.14636 -14.95002 -14.55047 -14.44400 -14.21186 -13.88599
-13.72485 -13.55252 -13.29513 -13.14262 -13.03625 -12.93425 -12.73082 -12.59299
-12.38820 -12.30975 -12.22142 -12.10225 -12.04969 -11.82699 -11.75562 -11.61057
-11.45021 -10.97607 -10.78059 -10.72760 -10.63866 -10.19100 -9.44264 -8.90920
-7.77558 -5.22718 1.47183 1.50314 1.56712 1.57860 2.00510 2.49055
2.77179 2.99172 3.15396 3.32101 3.43227 3.61422 3.69598 3.78224
3.90523 3.92709 3.94539 4.00334 4.04699 4.21710 4.28398 4.31159
4.36652 4.47600 4.59516 4.62065 4.67265 4.67557 4.75495 4.76062
4.79419 4.84001 4.92174 4.94553 4.98123 4.99365 5.03060 5.07649
5.08639 5.31043 5.38869 5.46022 5.60369 5.79149 5.86656 5.92179
6.20501 6.28792 6.43725 6.79423 7.08970 7.16163 7.76460 8.40112
9.24289
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.019022 B = 0.002103 C = 0.001993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1471.630741 B =13314.046510 C =14047.763689
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.096 4.096
3 H 0.121 0.879
4 C 0.082 3.918
5 N -0.532 5.532
6 C 0.011 3.989
7 C 0.062 3.938
8 O -0.408 6.408
9 C 0.065 3.935
10 C 0.017 3.983
11 C 0.518 3.482
12 O -0.583 6.583
13 N -0.715 5.715
14 C 0.119 3.881
15 C 0.126 3.874
16 O -0.554 6.554
17 C -0.121 4.121
18 C 0.160 3.840
19 N -0.623 5.623
20 C -0.239 4.239
21 H 0.084 0.916
22 C -0.069 4.069
23 N -0.950 5.950
24 Si 0.982 3.018
25 H -0.277 1.277
26 H -0.295 1.295
27 H -0.276 1.276
28 C 0.114 3.886
29 H 0.046 0.954
30 H 0.088 0.912
31 H 0.066 0.934
32 H 0.072 0.928
33 H 0.028 0.972
34 H 0.033 0.967
35 H 0.104 0.896
36 H 0.066 0.934
37 H 0.112 0.888
38 H 0.065 0.935
39 H 0.111 0.889
40 H 0.095 0.905
41 H 0.033 0.967
42 H 0.412 0.588
43 H 0.068 0.932
44 H 0.077 0.923
45 H 0.386 0.614
46 H 0.085 0.915
47 H 0.085 0.915
48 H 0.075 0.925
49 H -0.015 1.015
50 H 0.247 0.753
51 H 0.038 0.962
52 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.958 4.907 26.214 27.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.117 4.117
3 H 0.138 0.862
4 C -0.047 4.047
5 N -0.257 5.257
6 C -0.117 4.117
7 C -0.014 4.014
8 O -0.327 6.327
9 C -0.012 4.012
10 C -0.112 4.112
11 C 0.305 3.695
12 O -0.463 6.463
13 N -0.368 5.368
14 C -0.006 4.006
15 C 0.084 3.916
16 O -0.362 6.362
17 C -0.160 4.160
18 C 0.034 3.966
19 N -0.349 5.349
20 C -0.368 4.368
21 H 0.102 0.898
22 C -0.261 4.261
23 N -0.599 5.599
24 Si 0.810 3.190
25 H -0.203 1.203
26 H -0.222 1.222
27 H -0.202 1.202
28 C -0.012 4.012
29 H 0.065 0.935
30 H 0.107 0.893
31 H 0.085 0.915
32 H 0.091 0.909
33 H 0.046 0.954
34 H 0.051 0.949
35 H 0.122 0.878
36 H 0.085 0.915
37 H 0.129 0.871
38 H 0.083 0.917
39 H 0.129 0.871
40 H 0.113 0.887
41 H 0.052 0.948
42 H 0.249 0.751
43 H 0.087 0.913
44 H 0.095 0.905
45 H 0.235 0.765
46 H 0.103 0.897
47 H 0.103 0.897
48 H 0.093 0.907
49 H 0.003 0.997
50 H 0.057 0.943
51 H 0.055 0.945
52 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 6.147 4.097 25.680 26.721
hybrid contribution -0.439 0.095 -0.665 0.802
sum 5.709 4.192 25.015 25.998
Atomic orbital electron populations
1.21664 0.90884 1.02439 1.03821 1.21243 0.99170 1.01134 0.90167
0.86165 1.21735 0.97748 0.96829 0.88357 1.62203 1.57616 1.04135
1.01768 1.22951 0.96351 0.91451 1.00965 1.22795 1.01636 0.94053
0.82930 1.87961 1.73557 1.30258 1.40965 1.22760 0.97155 0.83561
0.97713 1.22826 0.99769 0.98215 0.90343 1.21114 0.78998 0.84014
0.85339 1.90692 1.39949 1.28270 1.87412 1.45883 1.53482 1.32397
1.04999 1.21756 0.99669 0.96363 0.82812 1.22186 0.91199 0.83954
0.94239 1.86595 1.76377 1.24457 1.48725 1.22906 0.99936 0.98738
0.94440 1.21654 0.84348 0.97504 0.93053 1.44690 1.02218 1.83963
1.04016 1.19422 0.83133 1.41025 0.93250 0.89803 1.25673 1.01832
1.02500 0.96131 1.70043 1.31280 1.56379 1.02207 0.85106 0.79229
0.78160 0.76546 1.20333 1.22162 1.20166 1.22116 0.93092 0.98586
0.87403 0.93487 0.89320 0.91511 0.90923 0.95361 0.94894 0.87833
0.91543 0.87051 0.91660 0.87092 0.88715 0.94849 0.75127 0.91339
0.90465 0.76517 0.89692 0.89667 0.90744 0.99721 0.94324 0.94458
0.94488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.82 8.98 71.98 0.65 -1.17 16
2 C -0.10 -1.48 2.65 -11.54 -0.03 -1.51 16
3 H 0.12 1.32 6.30 -2.39 -0.02 1.31 16
4 C 0.08 1.43 3.69 86.30 0.32 1.74 16
5 N -0.53 -7.58 4.18 -895.22 -3.74 -11.32 16
6 C 0.01 0.13 5.44 86.31 0.47 0.60 16
7 C 0.06 0.72 7.01 72.01 0.50 1.22 16
8 O -0.41 -6.52 10.83 -148.98 -1.61 -8.13 16
9 C 0.06 0.78 7.01 72.01 0.50 1.29 16
10 C 0.02 0.22 5.64 86.31 0.49 0.71 16
11 C 0.52 11.77 7.15 87.66 0.63 12.39 16
12 O -0.58 -18.25 15.92 -3.02 -0.05 -18.29 16
13 N -0.72 -14.98 5.02 -463.05 -2.33 -17.31 16
14 C 0.12 3.15 4.80 86.38 0.41 3.57 16
15 C 0.13 3.98 0.93 -9.60 -0.01 3.97 16
16 O -0.55 -16.63 13.10 -148.98 -1.95 -18.58 16
17 C -0.12 -4.54 6.26 31.99 0.20 -4.34 16
18 C 0.16 7.95 5.88 86.86 0.51 8.46 16
19 N -0.62 -31.39 3.39 -691.99 -2.35 -33.74 16
20 C -0.24 -13.17 10.27 84.03 0.86 -12.31 16
21 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16
22 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16
23 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16
24 Si 0.98 45.12 29.55 68.60 2.03 47.15 16
25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
26 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16
27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
28 C 0.11 4.26 5.76 86.73 0.50 4.76 16
29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.09 1.09 7.75 -2.39 -0.02 1.07 16
31 H 0.07 0.83 7.56 -2.39 -0.02 0.81 16
32 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16
33 H 0.03 0.59 7.93 -2.38 -0.02 0.57 16
34 H 0.03 0.48 8.14 -2.38 -0.02 0.47 16
35 H 0.10 0.93 6.29 -2.39 -0.02 0.92 16
36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16
37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
39 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16
40 H 0.09 1.13 8.09 -2.38 -0.02 1.11 16
41 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16
42 H 0.41 6.66 6.89 -92.71 -0.64 6.02 16
43 H 0.07 2.01 8.03 -2.39 -0.02 1.99 16
44 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16
45 H 0.39 7.83 8.44 -74.06 -0.62 7.20 16
46 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16
47 H 0.08 3.02 7.96 -2.39 -0.02 3.00 16
48 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16
49 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16
50 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16
51 H 0.04 1.37 7.82 -2.38 -0.02 1.35 16
52 H 0.04 1.30 8.07 -2.38 -0.02 1.28 16
Total: -1.00 -73.79 403.00 -3.66 -77.45
By element:
Atomic # 1 Polarization: 23.55 SS G_CDS: -0.34 Total: 23.21 kcal
Atomic # 6 Polarization: 9.50 SS G_CDS: 6.47 Total: 15.98 kcal
Atomic # 7 Polarization: -110.58 SS G_CDS: -8.20 Total: -118.78 kcal
Atomic # 8 Polarization: -41.39 SS G_CDS: -3.61 Total: -45.00 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -73.79 -3.66 -77.45 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278820878.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.676 kcal
(2) G-P(sol) polarization free energy of solvation -73.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds