Wall clock time and date at job start Sat Apr 11 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 C 1.53005 * 109.46731 * 119.99579 * 2 1 3 5 5 C 1.50707 * 109.46629 * 185.00029 * 4 2 1 6 6 O 1.21276 * 120.00148 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99718 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00143 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47304 * 179.97438 * 8 7 5 10 10 H 1.09009 * 109.46964 * 65.00463 * 9 8 7 11 11 C 1.53005 * 109.47077 * 184.99828 * 9 8 7 12 12 O 1.42899 * 109.46713 * 55.00481 * 11 9 8 13 13 N 1.46496 * 109.47681 * 305.00152 * 9 8 7 14 14 C 1.36937 * 120.00205 * 154.99734 * 13 9 8 15 15 H 1.07995 * 119.99701 * 0.02562 * 14 13 9 16 16 C 1.38807 * 120.00064 * 180.02562 * 14 13 9 17 17 N 1.31626 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00428 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46815 * 59.99530 * 18 16 14 20 20 H 1.48497 * 109.47700 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47042 * 299.99975 * 18 16 14 22 22 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 23 23 C 1.34775 * 119.99299 * 85.00358 * 22 2 1 24 24 O 1.21276 * 120.00699 * 359.97438 * 23 22 2 25 25 C 1.50709 * 119.99599 * 179.97438 * 23 22 2 26 26 C 1.55238 * 110.58096 * 294.87565 * 25 23 22 27 27 C 1.54894 * 102.58338 * 203.33573 * 26 25 23 28 28 C 1.54266 * 104.31305 * 37.93170 * 27 26 25 29 29 C 1.53869 * 106.60031 * 336.32486 * 28 27 26 30 30 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 32 32 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 33 33 H 1.08998 * 109.47203 * 304.99695 * 4 2 1 34 34 H 1.08996 * 109.47084 * 65.00294 * 4 2 1 35 35 H 0.97006 * 120.00120 * 0.02562 * 7 5 4 36 36 H 1.08993 * 109.47228 * 300.00321 * 8 7 5 37 37 H 1.09009 * 109.46828 * 59.99998 * 8 7 5 38 38 H 1.09002 * 109.46772 * 174.99828 * 11 9 8 39 39 H 1.08994 * 109.47198 * 295.00468 * 11 9 8 40 40 H 0.96697 * 113.99832 * 179.97438 * 12 11 9 41 41 H 0.97007 * 119.99922 * 335.00360 * 13 9 8 42 42 H 0.97000 * 120.00092 * 180.02562 * 17 16 14 43 43 H 0.96998 * 120.00025 * 264.99975 * 22 2 1 44 44 H 1.09006 * 110.43428 * 57.45967 * 25 23 22 45 45 H 1.08996 * 110.89448 * 85.05138 * 26 25 23 46 46 H 1.08993 * 110.76342 * 321.56803 * 26 25 23 47 47 H 1.09002 * 110.48891 * 279.18596 * 27 26 25 48 48 H 1.08998 * 110.48494 * 156.67683 * 27 26 25 49 49 H 1.09001 * 110.03084 * 95.60669 * 28 27 26 50 50 H 1.08996 * 110.03108 * 216.98559 * 28 27 26 51 51 H 1.08999 * 110.04012 * 119.28327 * 29 28 27 52 52 H 1.09006 * 110.02998 * 240.67078 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1795 2.3349 8 6 5.6749 -1.0766 2.3964 9 6 6.1847 -1.7965 3.6464 10 1 5.9741 -2.8628 3.5629 11 6 7.6942 -1.5837 3.7776 12 8 7.9802 -0.1836 3.7699 13 7 5.5108 -1.2569 4.8300 14 6 5.3885 -2.0240 5.9577 15 1 5.7891 -3.0267 5.9746 16 6 4.7495 -1.5128 7.0789 17 7 4.2616 -0.2905 7.0583 18 14 4.5831 -2.5590 8.6175 19 1 5.9333 -2.9302 9.1120 20 1 3.8674 -1.7879 9.6655 21 1 3.8171 -3.7904 8.2983 22 7 2.0183 -0.6908 -1.1961 23 6 2.1470 -0.0184 -2.3570 24 8 1.8582 1.1582 -2.4117 25 6 2.6499 -0.7288 -3.5874 26 6 4.1205 -1.1856 -3.3910 27 6 4.6330 -1.3088 -4.8475 28 6 3.9719 -0.1265 -5.5856 29 6 2.7111 0.2423 -4.7844 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6053 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.7324 -1.6546 3.0296 36 1 6.1092 -1.5368 1.5090 37 1 5.9636 -0.0263 2.4393 38 1 8.0428 -2.0206 4.7134 39 1 8.2027 -2.0630 2.9411 40 1 8.9207 0.0261 3.8502 41 1 5.1512 -0.3560 4.8148 42 1 3.8154 0.0669 7.8420 43 1 2.2490 -1.6319 -1.1524 44 1 2.0135 -1.5825 -3.8208 45 1 4.1637 -2.1493 -2.8835 46 1 4.6889 -0.4337 -2.8437 47 1 4.3169 -2.2561 -5.2843 48 1 5.7188 -1.2189 -4.8787 49 1 4.6551 0.7223 -5.6183 50 1 3.6983 -0.4243 -6.5978 51 1 2.7822 1.2700 -4.4282 52 1 1.8247 0.1239 -5.4078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700808714.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:28:03 Heat of formation + Delta-G solvation = -136.652682 kcal Electronic energy + Delta-G solvation = -30708.589967 eV Core-core repulsion = 26514.276093 eV Total energy + Delta-G solvation = -4194.313875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.29606 -39.29839 -37.47862 -37.06571 -35.61163 -34.82776 -33.46653 -31.92673 -31.32280 -29.20271 -28.82585 -28.62877 -27.75518 -25.01231 -23.66610 -22.89311 -21.14657 -20.59222 -20.15248 -19.95674 -19.56947 -17.70605 -17.43808 -16.74294 -16.57701 -16.39656 -15.86940 -15.67460 -15.02028 -14.95928 -14.68041 -14.24821 -14.03783 -13.75791 -13.60898 -13.50857 -13.42919 -13.11702 -13.02696 -12.82479 -12.43231 -12.23072 -12.07375 -11.86195 -11.79419 -11.45730 -11.40987 -11.32190 -11.28393 -11.02662 -10.92999 -10.91070 -10.87152 -10.60234 -10.59485 -10.16525 -9.82630 -9.65192 -9.54116 -9.37490 -9.02873 -8.98313 -8.56121 -7.07791 -5.85176 -3.15845 2.73590 2.97406 3.21516 3.35753 3.41042 3.42721 3.57151 4.31233 4.39788 4.48886 4.57959 4.67281 4.89695 4.93865 5.03063 5.13618 5.15637 5.28299 5.31357 5.36086 5.38922 5.41817 5.45134 5.47022 5.49647 5.54421 5.59665 5.65858 5.68187 5.73978 5.86785 5.88234 5.99659 6.00943 6.01966 6.02566 6.13560 6.15466 6.20095 6.35005 6.48284 6.55760 6.72451 6.92480 7.55276 7.57762 7.96419 8.18201 8.31763 8.32336 8.61631 9.43881 9.99216 10.35702 11.36180 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002458 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.618804 B =11387.488387 C =12697.307587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.096 0.904 4 C -0.153 4.153 5 C 0.505 3.495 6 O -0.543 6.543 7 N -0.714 5.714 8 C 0.120 3.880 9 C 0.166 3.834 10 H 0.064 0.936 11 C 0.059 3.941 12 O -0.560 6.560 13 N -0.713 5.713 14 C -0.249 4.249 15 H 0.069 0.931 16 C -0.007 4.007 17 N -0.926 5.926 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.286 1.286 22 N -0.712 5.712 23 C 0.527 3.473 24 O -0.543 6.543 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.112 4.112 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.408 0.592 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.364 0.636 41 H 0.389 0.611 42 H 0.257 0.743 43 H 0.395 0.605 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.084 0.916 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -5.587 -20.486 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.114 0.886 4 C -0.194 4.194 5 C 0.291 3.709 6 O -0.421 6.421 7 N -0.366 5.366 8 C -0.004 4.004 9 C 0.055 3.945 10 H 0.082 0.918 11 C -0.023 4.023 12 O -0.363 6.363 13 N -0.354 5.354 14 C -0.380 4.380 15 H 0.087 0.913 16 C -0.204 4.204 17 N -0.573 5.573 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 N -0.362 5.362 23 C 0.313 3.687 24 O -0.420 6.420 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.150 4.150 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.208 0.792 41 H 0.223 0.777 42 H 0.067 0.933 43 H 0.229 0.771 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.103 0.897 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.348 -4.384 -21.034 21.745 hybrid contribution 0.440 -1.144 1.633 2.042 sum -2.908 -5.528 -19.402 20.382 Atomic orbital electron populations 1.22187 0.94982 1.02096 1.02831 1.20645 0.93165 0.98190 0.82637 0.88629 1.22052 0.93724 1.03293 1.00285 1.20472 0.89618 0.79002 0.81835 1.90706 1.70182 1.42226 1.38994 1.46023 1.08306 1.56110 1.26145 1.21496 0.79313 1.02213 0.97398 1.20582 0.89737 0.96691 0.87508 0.91799 1.23039 0.99014 0.81759 0.98440 1.86573 1.28703 1.24076 1.96960 1.42364 1.66765 1.16875 1.09429 1.19159 1.31346 0.96496 0.91033 0.91292 1.24750 1.01032 0.96488 0.98158 1.69669 1.42742 1.15019 1.29833 0.86300 0.77597 0.79227 0.83153 1.21345 1.21695 1.21247 1.45850 1.67275 1.13549 1.09529 1.20382 0.76717 0.87126 0.84446 1.90659 1.50249 1.16049 1.85065 1.22216 0.98316 0.99314 0.93686 1.22521 0.93430 1.01714 0.97234 1.22354 1.00310 0.98414 0.95055 1.22143 0.96975 0.98339 0.98759 1.22058 0.97730 1.00523 0.94652 0.92465 0.91323 0.91921 0.87131 0.88667 0.75550 0.92385 0.90757 0.93369 0.95609 0.79157 0.77668 0.93341 0.77120 0.88665 0.91098 0.90347 0.91597 0.91436 0.91702 0.91898 0.89748 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 2 C 0.16 1.91 2.13 -67.93 -0.14 1.77 16 3 H 0.10 1.49 7.39 -51.93 -0.38 1.10 16 4 C -0.15 -1.72 5.24 -27.88 -0.15 -1.87 16 5 C 0.51 7.71 7.69 -10.98 -0.08 7.62 16 6 O -0.54 -10.01 15.35 5.56 0.09 -9.93 16 7 N -0.71 -11.30 5.39 -60.29 -0.32 -11.62 16 8 C 0.12 2.07 5.12 -4.04 -0.02 2.05 16 9 C 0.17 3.05 2.84 -67.93 -0.19 2.86 16 10 H 0.06 1.12 8.08 -51.92 -0.42 0.70 16 11 C 0.06 1.00 6.86 37.16 0.25 1.26 16 12 O -0.56 -9.95 12.64 -35.23 -0.45 -10.39 16 13 N -0.71 -16.52 4.51 -53.43 -0.24 -16.76 16 14 C -0.25 -6.40 9.93 -15.06 -0.15 -6.55 16 15 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 18 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 N -0.71 -8.08 4.21 -53.80 -0.23 -8.31 16 23 C 0.53 6.89 7.10 -10.98 -0.08 6.81 16 24 O -0.54 -9.21 15.09 5.56 0.08 -9.12 16 25 C -0.11 -1.12 3.25 -89.92 -0.29 -1.42 16 26 C -0.11 -1.06 6.34 -24.55 -0.16 -1.22 16 27 C -0.12 -0.98 6.82 -25.07 -0.17 -1.16 16 28 C -0.12 -1.04 6.80 -25.62 -0.17 -1.21 16 29 C -0.11 -1.11 6.18 -25.62 -0.16 -1.27 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.41 6.46 8.14 -40.82 -0.33 6.13 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.49 7.39 -51.92 -0.38 1.10 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.36 4.66 9.12 45.56 0.42 5.08 16 41 H 0.39 10.09 7.80 -40.82 -0.32 9.77 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.40 3.60 8.60 -40.82 -0.35 3.25 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 1.05 6.85 -51.93 -0.36 0.70 16 52 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 422.11 15.07 6.36 6.36 Total: -1.00 -33.70 422.11 -8.70 -42.40 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -8.44 Total: 21.07 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.26 Total: 6.10 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.07 Total: -62.76 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.28 Total: -29.44 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.70 -8.70 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700808714.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.254 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds