Wall clock time and date at job start Sat Apr 11 2020 06:28:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08992 * 109.46878 * 2 1
4 4 C 1.53005 * 109.46731 * 119.99579 * 2 1 3
5 5 C 1.50707 * 109.46629 * 185.00029 * 4 2 1
6 6 O 1.21276 * 120.00148 * 0.02562 * 5 4 2
7 7 N 1.34772 * 119.99718 * 179.97438 * 5 4 2
8 8 C 1.46502 * 120.00143 * 179.97438 * 7 5 4
9 9 C 1.52996 * 109.47304 * 179.97438 * 8 7 5
10 10 H 1.09009 * 109.46964 * 65.00463 * 9 8 7
11 11 C 1.53005 * 109.47077 * 184.99828 * 9 8 7
12 12 O 1.42899 * 109.46713 * 55.00481 * 11 9 8
13 13 N 1.46496 * 109.47681 * 305.00152 * 9 8 7
14 14 C 1.36937 * 120.00205 * 154.99734 * 13 9 8
15 15 H 1.07995 * 119.99701 * 0.02562 * 14 13 9
16 16 C 1.38807 * 120.00064 * 180.02562 * 14 13 9
17 17 N 1.31626 * 120.00208 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 120.00428 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.46815 * 59.99530 * 18 16 14
20 20 H 1.48497 * 109.47700 * 179.97438 * 18 16 14
21 21 H 1.48502 * 109.47042 * 299.99975 * 18 16 14
22 22 N 1.46499 * 109.47080 * 239.99265 * 2 1 3
23 23 C 1.34775 * 119.99299 * 85.00358 * 22 2 1
24 24 O 1.21276 * 120.00699 * 359.97438 * 23 22 2
25 25 C 1.50709 * 119.99599 * 179.97438 * 23 22 2
26 26 C 1.55238 * 110.58096 * 294.87565 * 25 23 22
27 27 C 1.54894 * 102.58338 * 203.33573 * 26 25 23
28 28 C 1.54266 * 104.31305 * 37.93170 * 27 26 25
29 29 C 1.53869 * 106.60031 * 336.32486 * 28 27 26
30 30 H 1.09006 * 109.47290 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47261 * 300.00416 * 1 2 3
32 32 H 1.08993 * 109.47204 * 60.00734 * 1 2 3
33 33 H 1.08998 * 109.47203 * 304.99695 * 4 2 1
34 34 H 1.08996 * 109.47084 * 65.00294 * 4 2 1
35 35 H 0.97006 * 120.00120 * 0.02562 * 7 5 4
36 36 H 1.08993 * 109.47228 * 300.00321 * 8 7 5
37 37 H 1.09009 * 109.46828 * 59.99998 * 8 7 5
38 38 H 1.09002 * 109.46772 * 174.99828 * 11 9 8
39 39 H 1.08994 * 109.47198 * 295.00468 * 11 9 8
40 40 H 0.96697 * 113.99832 * 179.97438 * 12 11 9
41 41 H 0.97007 * 119.99922 * 335.00360 * 13 9 8
42 42 H 0.97000 * 120.00092 * 180.02562 * 17 16 14
43 43 H 0.96998 * 120.00025 * 264.99975 * 22 2 1
44 44 H 1.09006 * 110.43428 * 57.45967 * 25 23 22
45 45 H 1.08996 * 110.89448 * 85.05138 * 26 25 23
46 46 H 1.08993 * 110.76342 * 321.56803 * 26 25 23
47 47 H 1.09002 * 110.48891 * 279.18596 * 27 26 25
48 48 H 1.08998 * 110.48494 * 156.67683 * 27 26 25
49 49 H 1.09001 * 110.03084 * 95.60669 * 28 27 26
50 50 H 1.08996 * 110.03108 * 216.98559 * 28 27 26
51 51 H 1.08999 * 110.04012 * 119.28327 * 29 28 27
52 52 H 1.09006 * 110.02998 * 240.67078 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 1.2494
5 6 3.5419 -0.6148 1.3128
6 8 4.1449 -0.0204 0.4446
7 7 4.2148 -1.1795 2.3349
8 6 5.6749 -1.0766 2.3964
9 6 6.1847 -1.7965 3.6464
10 1 5.9741 -2.8628 3.5629
11 6 7.6942 -1.5837 3.7776
12 8 7.9802 -0.1836 3.7699
13 7 5.5108 -1.2569 4.8300
14 6 5.3885 -2.0240 5.9577
15 1 5.7891 -3.0267 5.9746
16 6 4.7495 -1.5128 7.0789
17 7 4.2616 -0.2905 7.0583
18 14 4.5831 -2.5590 8.6175
19 1 5.9333 -2.9302 9.1120
20 1 3.8674 -1.7879 9.6655
21 1 3.8171 -3.7904 8.2983
22 7 2.0183 -0.6908 -1.1961
23 6 2.1470 -0.0184 -2.3570
24 8 1.8582 1.1582 -2.4117
25 6 2.6499 -0.7288 -3.5874
26 6 4.1205 -1.1856 -3.3910
27 6 4.6330 -1.3088 -4.8475
28 6 3.9719 -0.1265 -5.5856
29 6 2.7111 0.2423 -4.7844
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5137 -0.8900
33 1 1.6053 -0.2616 2.1370
34 1 1.7516 -1.7714 1.2057
35 1 3.7324 -1.6546 3.0296
36 1 6.1092 -1.5368 1.5090
37 1 5.9636 -0.0263 2.4393
38 1 8.0428 -2.0206 4.7134
39 1 8.2027 -2.0630 2.9411
40 1 8.9207 0.0261 3.8502
41 1 5.1512 -0.3560 4.8148
42 1 3.8154 0.0669 7.8420
43 1 2.2490 -1.6319 -1.1524
44 1 2.0135 -1.5825 -3.8208
45 1 4.1637 -2.1493 -2.8835
46 1 4.6889 -0.4337 -2.8437
47 1 4.3169 -2.2561 -5.2843
48 1 5.7188 -1.2189 -4.8787
49 1 4.6551 0.7223 -5.6183
50 1 3.6983 -0.4243 -6.5978
51 1 2.7822 1.2700 -4.4282
52 1 1.8247 0.1239 -5.4078
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700808714.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:02
Heat of formation + Delta-G solvation = -163.505088 kcal
Electronic energy + Delta-G solvation = -30709.754375 eV
Core-core repulsion = 26514.276093 eV
Total energy + Delta-G solvation = -4195.478282 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.33591 -40.50207 -38.69378 -38.13174 -36.71471 -36.28490 -35.11152 -33.24580
-32.70332 -30.39060 -29.80444 -29.52183 -28.93019 -26.32528 -25.55652 -23.84001
-22.11103 -21.60204 -21.35166 -21.13258 -20.52075 -19.41354 -18.44580 -18.16309
-17.92384 -17.46190 -17.04714 -16.67057 -16.43246 -16.10742 -15.84132 -15.65438
-15.30193 -15.12730 -14.89039 -14.62673 -14.49205 -14.31397 -14.28417 -13.92437
-13.70650 -13.36861 -13.10156 -12.97247 -12.85925 -12.78928 -12.68476 -12.60635
-12.27320 -12.17621 -12.07230 -11.97793 -11.95927 -11.87913 -11.71734 -11.69155
-11.29913 -11.01469 -10.77529 -10.71697 -10.69414 -10.02446 -9.90390 -8.99344
-7.88663 -5.17961 1.51355 1.53001 1.59054 1.71939 1.75908 2.29865
2.34682 2.59132 3.43452 3.54795 3.61619 3.63167 3.70823 3.81002
3.88348 3.92308 4.06501 4.21563 4.26354 4.42683 4.46741 4.47422
4.53678 4.57277 4.59918 4.61541 4.62129 4.63134 4.71534 4.79468
4.81232 4.91477 4.96079 5.00729 5.07477 5.09299 5.22298 5.25380
5.27261 5.29777 5.37683 5.48045 5.54669 5.60299 5.61747 6.29805
6.62113 6.70510 7.05118 7.36217 7.36789 7.38098 8.10649 8.35939
9.33804
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.014598 B = 0.002458 C = 0.002205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1917.618804 B =11387.488387 C =12697.307587
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.159 3.841
3 H 0.051 0.949
4 C -0.141 4.141
5 C 0.503 3.497
6 O -0.579 6.579
7 N -0.712 5.712
8 C 0.133 3.867
9 C 0.162 3.838
10 H 0.082 0.918
11 C 0.062 3.938
12 O -0.585 6.585
13 N -0.722 5.722
14 C -0.236 4.236
15 H 0.082 0.918
16 C -0.071 4.071
17 N -0.967 5.967
18 Si 0.968 3.032
19 H -0.284 1.284
20 H -0.304 1.304
21 H -0.273 1.273
22 N -0.702 5.702
23 C 0.517 3.483
24 O -0.592 6.592
25 C -0.108 4.108
26 C -0.109 4.109
27 C -0.118 4.118
28 C -0.123 4.123
29 C -0.114 4.114
30 H 0.083 0.917
31 H 0.076 0.924
32 H 0.045 0.955
33 H 0.120 0.880
34 H 0.134 0.866
35 H 0.411 0.589
36 H 0.075 0.925
37 H 0.041 0.959
38 H 0.036 0.964
39 H 0.065 0.935
40 H 0.384 0.616
41 H 0.372 0.628
42 H 0.248 0.752
43 H 0.409 0.591
44 H 0.128 0.872
45 H 0.087 0.913
46 H 0.042 0.958
47 H 0.089 0.911
48 H 0.069 0.931
49 H 0.054 0.946
50 H 0.083 0.917
51 H 0.049 0.951
52 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.986 -9.034 -21.484 23.497
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.054 3.946
3 H 0.069 0.931
4 C -0.181 4.181
5 C 0.290 3.710
6 O -0.459 6.459
7 N -0.364 5.364
8 C 0.008 3.992
9 C 0.053 3.947
10 H 0.099 0.901
11 C -0.019 4.019
12 O -0.392 6.392
13 N -0.361 5.361
14 C -0.368 4.368
15 H 0.099 0.901
16 C -0.264 4.264
17 N -0.617 5.617
18 Si 0.798 3.202
19 H -0.211 1.211
20 H -0.231 1.231
21 H -0.199 1.199
22 N -0.352 5.352
23 C 0.305 3.695
24 O -0.473 6.473
25 C -0.129 4.129
26 C -0.147 4.147
27 C -0.155 4.155
28 C -0.160 4.160
29 C -0.152 4.152
30 H 0.101 0.899
31 H 0.095 0.905
32 H 0.064 0.936
33 H 0.138 0.862
34 H 0.152 0.848
35 H 0.247 0.753
36 H 0.093 0.907
37 H 0.060 0.940
38 H 0.054 0.946
39 H 0.083 0.917
40 H 0.232 0.768
41 H 0.203 0.797
42 H 0.057 0.943
43 H 0.245 0.755
44 H 0.146 0.854
45 H 0.106 0.894
46 H 0.060 0.940
47 H 0.107 0.893
48 H 0.087 0.913
49 H 0.073 0.927
50 H 0.102 0.898
51 H 0.068 0.932
52 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -3.399 -7.912 -22.050 23.671
hybrid contribution 0.567 -0.045 1.874 1.958
sum -2.832 -7.957 -20.176 21.873
Atomic orbital electron populations
1.22096 0.92957 1.03618 1.02441 1.20561 0.94614 0.96129 0.83344
0.93070 1.22053 0.90395 1.05610 1.00075 1.21146 0.91188 0.77794
0.80867 1.90704 1.71308 1.43581 1.40308 1.46010 1.07826 1.56191
1.26338 1.21268 0.80327 1.00146 0.97468 1.20840 0.90441 0.97373
0.86030 0.90061 1.22922 0.97874 0.81701 0.99377 1.86531 1.30942
1.24654 1.97038 1.42473 1.67359 1.15919 1.10386 1.19566 1.29015
0.96808 0.91371 0.90059 1.25478 1.02140 0.97599 1.01151 1.69838
1.44826 1.16938 1.30100 0.85296 0.77383 0.77921 0.79574 1.21072
1.23071 1.19869 1.45798 1.66447 1.14088 1.08901 1.21046 0.75976
0.86741 0.85704 1.90637 1.52466 1.18267 1.85921 1.22289 0.98932
0.99832 0.91867 1.22483 0.92635 1.01279 0.98279 1.22359 1.00382
0.99176 0.93633 1.22146 0.95923 0.98344 0.99628 1.22058 0.99288
0.98692 0.95189 0.89858 0.90471 0.93617 0.86221 0.84817 0.75307
0.90683 0.94039 0.94611 0.91737 0.76769 0.79668 0.94317 0.75497
0.85399 0.89393 0.93955 0.89254 0.91260 0.92714 0.89849 0.93246
0.90483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.87 9.48 71.98 0.68 -2.19 16
2 C 0.16 3.80 2.13 44.99 0.10 3.90 16
3 H 0.05 1.70 7.39 -2.39 -0.02 1.68 16
4 C -0.14 -2.97 5.24 29.85 0.16 -2.81 16
5 C 0.50 15.08 7.69 87.66 0.67 15.76 16
6 O -0.58 -21.75 15.35 -3.02 -0.05 -21.79 16
7 N -0.71 -21.92 5.39 -463.06 -2.49 -24.41 16
8 C 0.13 4.46 5.12 86.38 0.44 4.90 16
9 C 0.16 5.71 2.84 44.99 0.13 5.84 16
10 H 0.08 2.61 8.08 -2.38 -0.02 2.59 16
11 C 0.06 1.99 6.86 71.98 0.49 2.48 16
12 O -0.59 -20.30 12.64 -148.98 -1.88 -22.18 16
13 N -0.72 -33.10 4.51 -322.94 -1.46 -34.56 16
14 C -0.24 -11.86 9.93 84.03 0.83 -11.02 16
15 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16
16 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16
17 N -0.97 -56.89 13.06 21.65 0.28 -56.60 16
18 Si 0.97 43.58 29.55 68.60 2.03 45.61 16
19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16
21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
22 N -0.70 -15.51 4.21 -442.53 -1.86 -17.37 16
23 C 0.52 13.77 7.10 87.66 0.62 14.40 16
24 O -0.59 -21.39 15.09 -3.02 -0.05 -21.44 16
25 C -0.11 -2.03 3.25 -10.34 -0.03 -2.06 16
26 C -0.11 -1.96 6.34 32.01 0.20 -1.75 16
27 C -0.12 -1.63 6.82 31.67 0.22 -1.42 16
28 C -0.12 -1.90 6.80 31.32 0.21 -1.69 16
29 C -0.11 -2.26 6.18 31.32 0.19 -2.07 16
30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16
31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16
33 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16
34 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16
35 H 0.41 12.45 8.14 -92.70 -0.75 11.69 16
36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16
37 H 0.04 1.68 7.39 -2.38 -0.02 1.66 16
38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
40 H 0.38 9.41 9.12 -74.06 -0.68 8.73 16
41 H 0.37 19.57 7.80 -92.70 -0.72 18.84 16
42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16
43 H 0.41 6.62 8.60 -92.71 -0.80 5.82 16
44 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16
45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16
47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
49 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
51 H 0.05 1.33 6.85 -2.39 -0.02 1.31 16
52 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16
Total: -1.00 -76.76 422.11 -2.09 -78.85
By element:
Atomic # 1 Polarization: 57.00 SS G_CDS: -2.00 Total: 54.99 kcal
Atomic # 6 Polarization: 13.51 SS G_CDS: 5.39 Total: 18.90 kcal
Atomic # 7 Polarization: -127.41 SS G_CDS: -5.53 Total: -132.94 kcal
Atomic # 8 Polarization: -63.43 SS G_CDS: -1.97 Total: -65.41 kcal
Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal
Total: -76.76 -2.09 -78.85 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700808714.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.655 kcal
(2) G-P(sol) polarization free energy of solvation -76.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal
(6) G-S(sol) free energy of system = (1) + (5) -163.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds