Wall clock time and date at job start Sat Apr 11 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47079 * 240.00201 * 2 1 3 5 5 O 1.21283 * 119.99900 * 266.42376 * 4 2 1 6 6 N 1.34776 * 120.00333 * 86.43127 * 4 2 1 7 7 C 1.46500 * 119.99829 * 355.59177 * 6 4 2 8 8 C 1.46494 * 120.00533 * 175.58957 * 6 4 2 9 9 C 1.50702 * 109.47331 * 89.99814 * 8 6 4 10 10 H 1.08005 * 119.99415 * 359.97438 * 9 8 6 11 11 C 1.37879 * 120.00249 * 180.02562 * 9 8 6 12 12 N 1.31508 * 119.99948 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99795 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47720 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47383 * 119.99785 * 13 11 9 16 16 H 1.48501 * 109.47334 * 239.99659 * 13 11 9 17 17 N 1.46899 * 109.47235 * 119.99884 * 2 1 3 18 18 C 1.46849 * 111.00137 * 172.89322 * 17 2 1 19 19 C 1.53035 * 109.52441 * 174.16277 * 18 17 2 20 20 C 1.53117 * 109.27955 * 59.18224 * 19 18 17 21 21 C 1.53126 * 109.15951 * 302.34254 * 20 19 18 22 22 H 1.09001 * 109.50129 * 297.71856 * 21 20 19 23 23 O 1.45200 * 109.50351 * 177.63571 * 21 20 19 24 24 C 1.34638 * 116.99776 * 90.00198 * 23 21 20 25 25 O 1.21508 * 120.00158 * 0.02562 * 24 23 21 26 26 N 1.34771 * 119.99707 * 179.97438 * 24 23 21 27 27 C 1.46503 * 119.99899 * 179.97438 * 26 24 23 28 28 C 1.46503 * 120.00086 * 0.02562 * 26 24 23 29 29 C 1.46845 * 111.00090 * 48.68754 * 17 2 1 30 30 H 1.09004 * 109.46836 * 172.37546 * 1 2 3 31 31 H 1.09001 * 109.47070 * 292.37222 * 1 2 3 32 32 H 1.08997 * 109.47261 * 52.37785 * 1 2 3 33 33 H 1.08995 * 109.47424 * 84.73168 * 7 6 4 34 34 H 1.09001 * 109.47250 * 204.73357 * 7 6 4 35 35 H 1.09002 * 109.47065 * 324.72862 * 7 6 4 36 36 H 1.09004 * 109.47778 * 209.99965 * 8 6 4 37 37 H 1.09002 * 109.47297 * 330.00282 * 8 6 4 38 38 H 0.96998 * 120.00009 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46119 * 294.17779 * 18 17 2 40 40 H 1.09003 * 109.45722 * 54.15391 * 18 17 2 41 41 H 1.09001 * 109.50177 * 179.12639 * 19 18 17 42 42 H 1.09003 * 109.49981 * 299.19577 * 19 18 17 43 43 H 1.08988 * 109.52313 * 62.24750 * 20 19 18 44 44 H 1.08997 * 109.51942 * 182.44340 * 20 19 18 45 45 H 1.08998 * 109.46365 * 90.00593 * 27 26 24 46 46 H 1.09002 * 109.47131 * 210.00056 * 27 26 24 47 47 H 1.08994 * 109.47091 * 330.00727 * 27 26 24 48 48 H 1.08998 * 109.47325 * 89.99659 * 28 26 24 49 49 H 1.08998 * 109.47186 * 209.99559 * 28 26 24 50 50 H 1.08997 * 109.46899 * 329.99685 * 28 26 24 51 51 H 1.09001 * 109.45856 * 305.85314 * 29 17 2 52 52 H 1.08997 * 109.46485 * 65.81890 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2962 -1.8932 -1.1826 6 7 2.1885 -0.0313 -2.3841 7 6 1.7793 1.3729 -2.4687 8 6 2.7674 -0.6972 -3.5535 9 6 1.6676 -1.3288 -4.3676 10 1 0.6402 -1.2431 -4.0458 11 6 1.9732 -2.0169 -5.5227 12 7 3.2242 -2.1217 -5.9143 13 14 0.6099 -2.7992 -6.5321 14 1 -0.6995 -2.5388 -5.8817 15 1 0.6090 -2.2170 -7.8982 16 1 0.8363 -4.2643 -6.6186 17 7 2.0197 -0.6925 1.1994 18 6 3.4777 -0.8607 1.1516 19 6 3.9681 -1.4516 2.4754 20 6 3.2871 -2.8030 2.7088 21 6 1.7684 -2.6076 2.7061 22 1 1.4850 -1.9470 3.5255 23 8 1.1139 -3.8932 2.8711 24 6 0.8548 -4.2898 4.1313 25 8 1.1666 -3.5809 5.0676 26 7 0.2487 -5.4727 4.3543 27 6 -0.0328 -5.9046 5.7256 28 6 -0.1278 -6.3272 3.2253 29 6 1.3419 -1.9831 1.3756 30 1 -0.3633 -1.0186 -0.1364 31 1 -0.3633 0.3912 0.9503 32 1 -0.3633 0.6273 -0.8139 33 1 2.5850 2.0088 -2.1021 34 1 1.5603 1.6256 -3.5061 35 1 0.8880 1.5288 -1.8609 36 1 3.2965 0.0349 -4.1638 37 1 3.4645 -1.4680 -3.2248 38 1 3.4391 -2.6054 -6.7271 39 1 3.7391 -1.5333 0.3347 40 1 3.9499 0.1083 0.9894 41 1 5.0484 -1.5908 2.4337 42 1 3.7199 -0.7725 3.2911 43 1 3.5669 -3.4940 1.9138 44 1 3.6006 -3.2073 3.6713 45 1 -1.0197 -5.5499 6.0228 46 1 -0.0075 -6.9932 5.7761 47 1 0.7193 -5.4921 6.3980 48 1 0.6959 -7.0007 2.9890 49 1 -1.0098 -6.9106 3.4895 50 1 -0.3495 -5.7059 2.3576 51 1 0.2627 -1.8295 1.3759 52 1 1.6132 -2.6505 0.5576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497123322.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:39 Heat of formation + Delta-G solvation = -96.381011 kcal Electronic energy + Delta-G solvation = -31874.633998 eV Core-core repulsion = 27682.066435 eV Total energy + Delta-G solvation = -4192.567564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79738 -40.05457 -38.02439 -36.58337 -35.63537 -34.83599 -33.92355 -32.57566 -30.39574 -29.84998 -28.35475 -27.77357 -26.41551 -26.00603 -24.82979 -23.53032 -22.80737 -21.47713 -20.60335 -19.95494 -18.47426 -18.03503 -17.26552 -16.60219 -16.52794 -16.45678 -16.13812 -15.11901 -14.93247 -14.84752 -14.64454 -14.47114 -14.32145 -13.75697 -13.55090 -13.38235 -13.27583 -13.03034 -12.91064 -12.81941 -12.66742 -12.37869 -12.28461 -12.21479 -12.06691 -11.78595 -11.67279 -11.44540 -11.22654 -11.07445 -10.97341 -10.82468 -10.72109 -10.66662 -10.61980 -10.49686 -10.18354 -10.00027 -9.67468 -9.53333 -9.05267 -8.47165 -7.84890 -7.66350 -6.07530 -4.12073 1.99167 2.71232 3.26604 3.27239 3.34963 3.39172 3.59072 3.93392 4.14774 4.41841 4.75075 4.82575 4.85631 4.90749 5.02599 5.04784 5.06942 5.12691 5.27119 5.29612 5.31819 5.33062 5.37534 5.46874 5.52359 5.55413 5.60676 5.65076 5.81663 5.86944 5.89583 5.92312 5.92974 6.00606 6.10674 6.12380 6.15752 6.22770 6.24921 6.35352 6.54198 6.95706 7.05989 7.10913 7.12684 7.38457 7.50158 7.88580 8.17376 8.19993 8.36009 8.86116 9.02557 9.53088 11.00628 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.002997 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.827612 B = 9341.287573 C =10600.228265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.102 0.898 4 C 0.480 3.520 5 O -0.538 6.538 6 N -0.599 5.599 7 C 0.080 3.920 8 C 0.245 3.755 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.506 5.506 18 C 0.034 3.966 19 C -0.106 4.106 20 C -0.136 4.136 21 C 0.117 3.883 22 H 0.091 0.909 23 O -0.359 6.359 24 C 0.648 3.352 25 O -0.573 6.573 26 N -0.607 5.607 27 C 0.102 3.898 28 C 0.082 3.918 29 C 0.038 3.962 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -0.473 19.517 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.049 4.049 3 H 0.120 0.880 4 C 0.265 3.735 5 O -0.416 6.416 6 N -0.331 5.331 7 C -0.065 4.065 8 C 0.125 3.875 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.231 5.231 18 C -0.093 4.093 19 C -0.144 4.144 20 C -0.174 4.174 21 C 0.062 3.938 22 H 0.109 0.891 23 O -0.272 6.272 24 C 0.403 3.597 25 O -0.462 6.462 26 N -0.349 5.349 27 C -0.039 4.039 28 C -0.060 4.060 29 C -0.090 4.090 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.724 -0.611 20.025 20.584 hybrid contribution -0.497 -0.910 -1.442 1.776 sum -5.221 -1.522 18.583 19.362 Atomic orbital electron populations 1.21871 0.92418 1.03159 1.02751 1.21889 0.97178 0.98750 0.87038 0.87998 1.21441 0.79231 0.87802 0.85053 1.90602 1.51421 1.15167 1.84405 1.48286 1.60725 1.11305 1.12757 1.21720 0.98688 0.82800 1.03249 1.19290 0.94186 0.92925 0.81073 1.21440 0.93630 1.33886 1.07207 0.92481 1.24940 0.95650 0.96071 0.97511 1.69937 1.17135 1.42320 1.24048 0.86449 0.82063 0.79195 0.79752 1.19810 1.20959 1.20887 1.62367 1.05412 1.20440 1.34851 1.22360 0.87465 1.01364 0.98133 1.21452 0.99589 0.95603 0.97721 1.21995 0.94043 0.98805 1.02558 1.22632 0.91477 0.80256 0.99480 0.89116 1.86267 1.73673 1.39880 1.27402 1.18063 0.77400 0.82043 0.82219 1.90965 1.57473 1.54520 1.43224 1.46493 1.61892 1.17975 1.08524 1.21644 1.01780 0.99892 0.80621 1.21813 1.00445 0.94915 0.88866 1.22312 0.99337 0.91293 0.96016 0.91728 0.90892 0.91273 0.93739 0.90513 0.92295 0.95088 0.94117 0.92777 0.91715 0.90814 0.90858 0.91094 0.90850 0.91498 0.92461 0.90650 0.90237 0.92328 0.90876 0.90001 0.90075 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.09 37.16 0.30 -1.59 16 2 C 0.06 0.94 2.14 -68.87 -0.15 0.80 16 3 H 0.10 1.32 7.12 -51.93 -0.37 0.95 16 4 C 0.48 9.50 5.90 -10.99 -0.06 9.43 16 5 O -0.54 -12.72 11.97 5.55 0.07 -12.65 16 6 N -0.60 -12.31 2.86 -182.96 -0.52 -12.84 16 7 C 0.08 1.22 9.64 59.85 0.58 1.79 16 8 C 0.24 6.30 5.10 -5.20 -0.03 6.28 16 9 C -0.52 -14.68 9.39 -34.44 -0.32 -15.00 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 13 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 N -0.51 -7.43 4.73 -228.08 -1.08 -8.51 16 18 C 0.03 0.50 4.88 -3.83 -0.02 0.48 16 19 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 20 C -0.14 -1.88 5.64 -26.61 -0.15 -2.03 16 21 C 0.12 1.71 2.62 -26.65 -0.07 1.64 16 22 H 0.09 1.38 7.16 -51.93 -0.37 1.01 16 23 O -0.36 -5.30 8.71 -40.32 -0.35 -5.65 16 24 C 0.65 9.24 8.37 54.05 0.45 9.70 16 25 O -0.57 -9.46 15.18 -19.28 -0.29 -9.76 16 26 N -0.61 -6.56 3.27 -195.40 -0.64 -7.20 16 27 C 0.10 0.79 10.44 59.85 0.62 1.42 16 28 C 0.08 0.68 10.44 59.85 0.62 1.31 16 29 C 0.04 0.59 4.29 -3.83 -0.02 0.57 16 30 H 0.06 0.94 6.68 -51.93 -0.35 0.59 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.84 6.46 -51.93 -0.34 0.50 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 35 H 0.06 0.75 5.36 -51.93 -0.28 0.47 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.19 7.49 -51.93 -0.39 0.80 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.06 1.17 5.98 -51.93 -0.31 0.85 16 40 H 0.07 0.99 8.12 -51.93 -0.42 0.56 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.09 8.14 -51.94 -0.42 0.67 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.37 8.07 -51.93 -0.42 -0.04 16 47 H 0.08 0.71 7.42 -51.93 -0.39 0.32 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 50 H 0.08 0.77 7.37 -51.93 -0.38 0.39 16 51 H 0.08 1.19 5.99 -51.93 -0.31 0.88 16 52 H 0.09 1.64 5.73 -51.93 -0.30 1.34 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -34.66 403.75 -8.32 -42.98 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.80 Total: 1.62 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 1.50 Total: 14.92 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -1.51 Total: -54.28 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.58 Total: -28.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.66 -8.32 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497123322.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.399 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds