Wall clock time and date at job start Sat Apr 11 2020 06:26:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.46906 * 2 1
4 4 C 1.50697 * 109.47079 * 240.00201 * 2 1 3
5 5 O 1.21283 * 119.99900 * 266.42376 * 4 2 1
6 6 N 1.34776 * 120.00333 * 86.43127 * 4 2 1
7 7 C 1.46500 * 119.99829 * 355.59177 * 6 4 2
8 8 C 1.46494 * 120.00533 * 175.58957 * 6 4 2
9 9 C 1.50702 * 109.47331 * 89.99814 * 8 6 4
10 10 H 1.08005 * 119.99415 * 359.97438 * 9 8 6
11 11 C 1.37879 * 120.00249 * 180.02562 * 9 8 6
12 12 N 1.31508 * 119.99948 * 359.97438 * 11 9 8
13 13 Si 1.86794 * 119.99795 * 180.02562 * 11 9 8
14 14 H 1.48503 * 109.47720 * 359.97438 * 13 11 9
15 15 H 1.48499 * 109.47383 * 119.99785 * 13 11 9
16 16 H 1.48501 * 109.47334 * 239.99659 * 13 11 9
17 17 N 1.46899 * 109.47235 * 119.99884 * 2 1 3
18 18 C 1.46849 * 111.00137 * 172.89322 * 17 2 1
19 19 C 1.53035 * 109.52441 * 174.16277 * 18 17 2
20 20 C 1.53117 * 109.27955 * 59.18224 * 19 18 17
21 21 C 1.53126 * 109.15951 * 302.34254 * 20 19 18
22 22 H 1.09001 * 109.50129 * 297.71856 * 21 20 19
23 23 O 1.45200 * 109.50351 * 177.63571 * 21 20 19
24 24 C 1.34638 * 116.99776 * 90.00198 * 23 21 20
25 25 O 1.21508 * 120.00158 * 0.02562 * 24 23 21
26 26 N 1.34771 * 119.99707 * 179.97438 * 24 23 21
27 27 C 1.46503 * 119.99899 * 179.97438 * 26 24 23
28 28 C 1.46503 * 120.00086 * 0.02562 * 26 24 23
29 29 C 1.46845 * 111.00090 * 48.68754 * 17 2 1
30 30 H 1.09004 * 109.46836 * 172.37546 * 1 2 3
31 31 H 1.09001 * 109.47070 * 292.37222 * 1 2 3
32 32 H 1.08997 * 109.47261 * 52.37785 * 1 2 3
33 33 H 1.08995 * 109.47424 * 84.73168 * 7 6 4
34 34 H 1.09001 * 109.47250 * 204.73357 * 7 6 4
35 35 H 1.09002 * 109.47065 * 324.72862 * 7 6 4
36 36 H 1.09004 * 109.47778 * 209.99965 * 8 6 4
37 37 H 1.09002 * 109.47297 * 330.00282 * 8 6 4
38 38 H 0.96998 * 120.00009 * 180.02562 * 12 11 9
39 39 H 1.09001 * 109.46119 * 294.17779 * 18 17 2
40 40 H 1.09003 * 109.45722 * 54.15391 * 18 17 2
41 41 H 1.09001 * 109.50177 * 179.12639 * 19 18 17
42 42 H 1.09003 * 109.49981 * 299.19577 * 19 18 17
43 43 H 1.08988 * 109.52313 * 62.24750 * 20 19 18
44 44 H 1.08997 * 109.51942 * 182.44340 * 20 19 18
45 45 H 1.08998 * 109.46365 * 90.00593 * 27 26 24
46 46 H 1.09002 * 109.47131 * 210.00056 * 27 26 24
47 47 H 1.08994 * 109.47091 * 330.00727 * 27 26 24
48 48 H 1.08998 * 109.47325 * 89.99659 * 28 26 24
49 49 H 1.08998 * 109.47186 * 209.99559 * 28 26 24
50 50 H 1.08997 * 109.46899 * 329.99685 * 28 26 24
51 51 H 1.09001 * 109.45856 * 305.85314 * 29 17 2
52 52 H 1.08997 * 109.46485 * 65.81890 * 29 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 8 2.2962 -1.8932 -1.1826
6 7 2.1885 -0.0313 -2.3841
7 6 1.7793 1.3729 -2.4687
8 6 2.7674 -0.6972 -3.5535
9 6 1.6676 -1.3288 -4.3676
10 1 0.6402 -1.2431 -4.0458
11 6 1.9732 -2.0169 -5.5227
12 7 3.2242 -2.1217 -5.9143
13 14 0.6099 -2.7992 -6.5321
14 1 -0.6995 -2.5388 -5.8817
15 1 0.6090 -2.2170 -7.8982
16 1 0.8363 -4.2643 -6.6186
17 7 2.0197 -0.6925 1.1994
18 6 3.4777 -0.8607 1.1516
19 6 3.9681 -1.4516 2.4754
20 6 3.2871 -2.8030 2.7088
21 6 1.7684 -2.6076 2.7061
22 1 1.4850 -1.9470 3.5255
23 8 1.1139 -3.8932 2.8711
24 6 0.8548 -4.2898 4.1313
25 8 1.1666 -3.5809 5.0676
26 7 0.2487 -5.4727 4.3543
27 6 -0.0328 -5.9046 5.7256
28 6 -0.1278 -6.3272 3.2253
29 6 1.3419 -1.9831 1.3756
30 1 -0.3633 -1.0186 -0.1364
31 1 -0.3633 0.3912 0.9503
32 1 -0.3633 0.6273 -0.8139
33 1 2.5850 2.0088 -2.1021
34 1 1.5603 1.6256 -3.5061
35 1 0.8880 1.5288 -1.8609
36 1 3.2965 0.0349 -4.1638
37 1 3.4645 -1.4680 -3.2248
38 1 3.4391 -2.6054 -6.7271
39 1 3.7391 -1.5333 0.3347
40 1 3.9499 0.1083 0.9894
41 1 5.0484 -1.5908 2.4337
42 1 3.7199 -0.7725 3.2911
43 1 3.5669 -3.4940 1.9138
44 1 3.6006 -3.2073 3.6713
45 1 -1.0197 -5.5499 6.0228
46 1 -0.0075 -6.9932 5.7761
47 1 0.7193 -5.4921 6.3980
48 1 0.6959 -7.0007 2.9890
49 1 -1.0098 -6.9106 3.4895
50 1 -0.3495 -5.7059 2.3576
51 1 0.2627 -1.8295 1.3759
52 1 1.6132 -2.6505 0.5576
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000497123322.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:26:38
Heat of formation + Delta-G solvation = -121.077433 kcal
Electronic energy + Delta-G solvation = -31875.704916 eV
Core-core repulsion = 27682.066435 eV
Total energy + Delta-G solvation = -4193.638481 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.96423 -41.36990 -39.31069 -37.71930 -36.65185 -36.52203 -35.23223 -34.56377
-31.55497 -31.14187 -29.60315 -29.02618 -27.47991 -27.22320 -26.18571 -25.19778
-24.03868 -22.86629 -21.69498 -21.17173 -19.88437 -19.08956 -18.69113 -18.40827
-17.88983 -17.60604 -17.41180 -16.77211 -16.24972 -15.99627 -15.97156 -15.80501
-15.47057 -15.13364 -14.72822 -14.68122 -14.48302 -14.23137 -14.07039 -13.89609
-13.67691 -13.49643 -13.48169 -13.43386 -13.21661 -13.15542 -12.97075 -12.83364
-12.82389 -12.62166 -12.43557 -12.26052 -12.18907 -12.08056 -11.89340 -11.80745
-11.67720 -11.65114 -11.15803 -11.06228 -10.67081 -9.88394 -9.42678 -9.21326
-8.24236 -6.38779 1.03037 1.34077 1.36310 1.48057 1.62737 1.77316
2.30075 2.44755 2.57623 3.04574 3.05464 3.59588 3.62879 3.75608
3.88809 3.94847 4.10290 4.17417 4.19688 4.26507 4.33767 4.38716
4.43618 4.45421 4.54542 4.69343 4.70391 4.72063 4.73753 4.81466
4.82179 4.85382 4.89416 4.91545 4.93339 4.96395 4.98714 5.05515
5.15619 5.20486 5.25684 5.35805 5.40376 5.55673 5.79863 5.84210
5.89344 6.04817 6.13611 6.68347 6.78588 7.12296 7.26970 7.46954
8.82788
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.012193 B = 0.002997 C = 0.002641
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2295.827612 B = 9341.287573 C =10600.228265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.072 3.928
3 H 0.135 0.865
4 C 0.472 3.528
5 O -0.586 6.586
6 N -0.608 5.608
7 C 0.073 3.927
8 C 0.261 3.739
9 C -0.537 4.537
10 H 0.051 0.949
11 C 0.006 3.994
12 N -0.929 5.929
13 Si 0.966 3.034
14 H -0.267 1.267
15 H -0.269 1.269
16 H -0.283 1.283
17 N -0.492 5.492
18 C 0.035 3.965
19 C -0.098 4.098
20 C -0.132 4.132
21 C 0.122 3.878
22 H 0.090 0.910
23 O -0.369 6.369
24 C 0.638 3.362
25 O -0.601 6.601
26 N -0.603 5.603
27 C 0.097 3.903
28 C 0.079 3.921
29 C 0.047 3.953
30 H 0.042 0.958
31 H 0.101 0.899
32 H 0.083 0.917
33 H 0.074 0.926
34 H 0.068 0.932
35 H 0.092 0.908
36 H 0.022 0.978
37 H -0.007 1.007
38 H 0.267 0.733
39 H 0.024 0.976
40 H 0.092 0.908
41 H 0.089 0.911
42 H 0.087 0.913
43 H 0.053 0.947
44 H 0.070 0.930
45 H 0.068 0.932
46 H 0.109 0.891
47 H 0.065 0.935
48 H 0.064 0.936
49 H 0.106 0.894
50 H 0.065 0.935
51 H 0.088 0.912
52 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.874 0.437 20.862 21.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.040 4.040
3 H 0.152 0.848
4 C 0.259 3.741
5 O -0.467 6.467
6 N -0.339 5.339
7 C -0.069 4.069
8 C 0.139 3.861
9 C -0.575 4.575
10 H 0.070 0.930
11 C -0.193 4.193
12 N -0.569 5.569
13 Si 0.791 3.209
14 H -0.191 1.191
15 H -0.194 1.194
16 H -0.209 1.209
17 N -0.216 5.216
18 C -0.093 4.093
19 C -0.136 4.136
20 C -0.170 4.170
21 C 0.066 3.934
22 H 0.108 0.892
23 O -0.282 6.282
24 C 0.393 3.607
25 O -0.493 6.493
26 N -0.344 5.344
27 C -0.044 4.044
28 C -0.063 4.063
29 C -0.081 4.081
30 H 0.061 0.939
31 H 0.119 0.881
32 H 0.101 0.899
33 H 0.092 0.908
34 H 0.086 0.914
35 H 0.110 0.890
36 H 0.040 0.960
37 H 0.012 0.988
38 H 0.075 0.925
39 H 0.043 0.957
40 H 0.110 0.890
41 H 0.107 0.893
42 H 0.105 0.895
43 H 0.072 0.928
44 H 0.089 0.911
45 H 0.087 0.913
46 H 0.127 0.873
47 H 0.084 0.916
48 H 0.083 0.917
49 H 0.125 0.875
50 H 0.084 0.916
51 H 0.107 0.893
52 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -6.624 0.317 21.387 22.392
hybrid contribution 0.103 -1.247 -1.831 2.217
sum -6.521 -0.930 19.556 20.636
Atomic orbital electron populations
1.21898 0.90630 1.02410 1.04886 1.22073 0.98479 0.99342 0.84064
0.84762 1.22481 0.78098 0.87446 0.86045 1.90598 1.53169 1.17649
1.85246 1.48320 1.60696 1.13380 1.11523 1.22022 1.01169 0.79902
1.03785 1.18718 0.93062 0.91750 0.82559 1.21697 0.93756 1.34333
1.07746 0.93028 1.25855 0.98112 0.96507 0.98777 1.70053 1.19158
1.43058 1.24676 0.85386 0.79055 0.77955 0.78532 1.19083 1.19380
1.20864 1.62505 1.05415 1.19658 1.34070 1.22376 0.87560 1.01481
0.97871 1.21445 1.00346 0.94817 0.96959 1.21957 0.93823 0.99343
1.01905 1.22545 0.91815 0.80401 0.98630 0.89169 1.86267 1.73850
1.39907 1.28151 1.18375 0.77815 0.82990 0.81555 1.90930 1.58960
1.55697 1.43690 1.46807 1.60370 1.16828 1.10372 1.21896 1.01831
1.01925 0.78702 1.21977 1.02099 0.94508 0.87719 1.22172 0.99817
0.91021 0.95140 0.93863 0.88059 0.89852 0.90775 0.91358 0.88969
0.96033 0.98844 0.92457 0.95726 0.88965 0.89291 0.89456 0.92836
0.91109 0.91301 0.87278 0.91622 0.91721 0.87505 0.91641 0.89329
0.93375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.34 8.09 71.98 0.58 -2.76 16
2 C 0.07 2.03 2.14 44.17 0.09 2.12 16
3 H 0.13 2.96 7.12 -2.39 -0.02 2.94 16
4 C 0.47 18.98 5.90 87.66 0.52 19.49 16
5 O -0.59 -29.35 11.97 -3.04 -0.04 -29.39 16
6 N -0.61 -25.22 2.86 -851.14 -2.43 -27.65 16
7 C 0.07 2.09 9.64 127.77 1.23 3.32 16
8 C 0.26 14.04 5.10 85.63 0.44 14.48 16
9 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16
10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16
11 C 0.01 0.36 5.46 84.66 0.46 0.82 16
12 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16
13 Si 0.97 45.07 29.54 68.60 2.03 47.09 16
14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16
15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
17 N -0.49 -14.00 4.73 -875.52 -4.14 -18.15 16
18 C 0.03 1.01 4.88 86.32 0.42 1.43 16
19 C -0.10 -2.39 6.09 30.64 0.19 -2.20 16
20 C -0.13 -3.73 5.64 30.68 0.17 -3.56 16
21 C 0.12 3.61 2.62 30.65 0.08 3.69 16
22 H 0.09 2.71 7.16 -2.39 -0.02 2.69 16
23 O -0.37 -11.17 8.71 -55.47 -0.48 -11.65 16
24 C 0.64 18.22 8.37 129.79 1.09 19.30 16
25 O -0.60 -19.88 15.18 19.82 0.30 -19.58 16
26 N -0.60 -12.42 3.27 ******* -3.28 -15.70 16
27 C 0.10 1.33 10.44 127.77 1.33 2.66 16
28 C 0.08 1.21 10.44 127.77 1.33 2.54 16
29 C 0.05 1.47 4.29 86.33 0.37 1.84 16
30 H 0.04 1.22 6.68 -2.38 -0.02 1.20 16
31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
32 H 0.08 1.75 6.46 -2.39 -0.02 1.73 16
33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
34 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16
35 H 0.09 2.01 5.36 -2.39 -0.01 2.00 16
36 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16
37 H -0.01 -0.41 7.49 -2.39 -0.02 -0.43 16
38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
39 H 0.02 0.93 5.98 -2.39 -0.01 0.92 16
40 H 0.09 2.31 8.12 -2.39 -0.02 2.29 16
41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
46 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16
47 H 0.06 1.11 7.42 -2.39 -0.02 1.09 16
48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
49 H 0.11 0.92 8.07 -2.39 -0.02 0.90 16
50 H 0.06 1.24 7.37 -2.39 -0.02 1.22 16
51 H 0.09 2.61 5.99 -2.39 -0.01 2.60 16
52 H 0.05 1.94 5.73 -2.39 -0.01 1.92 16
Total: -1.00 -80.38 403.75 1.69 -78.69
By element:
Atomic # 1 Polarization: 19.16 SS G_CDS: 0.90 Total: 20.06 kcal
Atomic # 6 Polarization: 23.92 SS G_CDS: 8.55 Total: 32.47 kcal
Atomic # 7 Polarization: -108.13 SS G_CDS: -9.57 Total: -117.70 kcal
Atomic # 8 Polarization: -60.40 SS G_CDS: -0.22 Total: -60.62 kcal
Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal
Total: -80.38 1.69 -78.69 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000497123322.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.389 kcal
(2) G-P(sol) polarization free energy of solvation -80.376 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds