Wall clock time and date at job start Sat Apr 11 2020 06:27:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46496 * 109.47050 * 2 1
4 4 C 1.46505 * 119.99678 * 269.99299 * 3 2 1
5 5 C 1.50696 * 109.47271 * 270.00460 * 4 3 2
6 6 H 1.07993 * 120.00208 * 359.97438 * 5 4 3
7 7 C 1.37878 * 119.99905 * 180.02562 * 5 4 3
8 8 N 1.31522 * 120.00047 * 359.97438 * 7 5 4
9 9 Si 1.86796 * 120.00138 * 179.97438 * 7 5 4
10 10 H 1.48498 * 109.47310 * 0.02562 * 9 7 5
11 11 H 1.48502 * 109.47109 * 120.00304 * 9 7 5
12 12 H 1.48502 * 109.47333 * 239.99877 * 9 7 5
13 13 C 1.34766 * 120.00364 * 90.00068 * 3 2 1
14 14 O 1.21284 * 120.00218 * 179.97438 * 13 3 2
15 15 C 1.50707 * 119.99900 * 359.97438 * 13 3 2
16 16 N 1.46905 * 109.47022 * 180.02562 * 15 13 3
17 17 C 1.48556 * 111.00234 * 305.42155 * 16 15 13
18 18 C 1.54377 * 104.59714 * 200.96207 * 17 16 15
19 19 C 1.54271 * 105.05657 * 23.84545 * 18 17 16
20 20 C 1.53003 * 110.40556 * 118.94697 * 19 18 17
21 21 N 1.46499 * 110.32425 * 241.10567 * 19 18 17
22 22 C 1.34784 * 119.99971 * 295.63991 * 21 19 18
23 23 O 1.21274 * 119.99897 * 359.72827 * 22 21 19
24 24 C 1.50695 * 119.99635 * 179.97438 * 22 21 19
25 25 O 1.42906 * 109.47045 * 180.02562 * 24 22 21
26 26 C 1.42897 * 114.00168 * 180.02562 * 25 24 22
27 27 C 1.48554 * 110.99795 * 189.99787 * 16 15 13
28 28 H 1.08993 * 109.47239 * 300.00261 * 1 2 3
29 29 H 1.09003 * 109.47047 * 60.00427 * 1 2 3
30 30 H 1.09003 * 109.47189 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.46891 * 239.99619 * 2 1 3
32 32 H 1.09000 * 109.46902 * 120.00066 * 2 1 3
33 33 H 1.09005 * 109.46818 * 30.00571 * 4 3 2
34 34 H 1.08998 * 109.46815 * 150.00246 * 4 3 2
35 35 H 0.96997 * 120.00088 * 179.97438 * 8 7 5
36 36 H 1.08991 * 109.47105 * 59.99782 * 15 13 3
37 37 H 1.08998 * 109.46699 * 299.99888 * 15 13 3
38 38 H 1.09007 * 110.40762 * 319.73617 * 17 16 15
39 39 H 1.08994 * 110.41453 * 82.06056 * 17 16 15
40 40 H 1.09003 * 110.32138 * 264.95644 * 18 17 16
41 41 H 1.08994 * 110.33158 * 142.74020 * 18 17 16
42 42 H 1.09001 * 109.46652 * 182.88624 * 20 19 18
43 43 H 1.09000 * 109.46754 * 302.88005 * 20 19 18
44 44 H 1.08995 * 109.47406 * 62.88326 * 20 19 18
45 45 H 0.96999 * 119.99984 * 115.63839 * 21 19 18
46 46 H 1.09005 * 109.47403 * 300.00056 * 24 22 21
47 47 H 1.09002 * 109.47422 * 60.00295 * 24 22 21
48 48 H 1.08995 * 109.46993 * 300.00027 * 26 25 24
49 49 H 1.08995 * 109.47099 * 60.00204 * 26 25 24
50 50 H 1.08999 * 109.47109 * 180.02562 * 26 25 24
51 51 H 1.08998 * 110.41194 * 40.26214 * 27 16 15
52 52 H 1.09002 * 110.51015 * 277.87147 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0717 -1.2688
5 6 3.6859 1.8348 -1.7038
6 1 4.3429 1.2307 -1.0958
7 6 4.1495 2.3902 -2.8775
8 7 3.3495 3.1263 -3.6177
9 14 5.9139 2.0972 -3.4163
10 1 6.6012 1.2410 -2.4164
11 1 5.9219 1.4186 -4.7372
12 1 6.6212 3.3985 -3.5241
13 6 2.2430 2.0165 1.1671
14 8 2.6477 3.1599 1.1670
15 6 1.9913 1.3063 2.4723
16 7 2.3091 2.2066 3.5888
17 6 3.6936 2.7321 3.4716
18 6 4.0619 3.1807 4.9021
19 6 3.1481 2.3531 5.8294
20 6 3.9872 1.4763 6.7612
21 7 2.2797 3.2379 6.6099
22 6 2.8165 4.0926 7.5032
23 8 4.0181 4.1257 7.6644
24 6 1.9232 5.0031 8.3056
25 8 2.7216 5.8079 9.1757
26 6 1.9676 6.7115 9.9863
27 6 2.3048 1.4740 4.8811
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0277 0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.5818 1.6875 -2.0285
34 1 2.0957 3.1409 -1.1385
35 1 3.6758 3.5173 -4.4432
36 1 2.6211 0.4187 2.5302
37 1 0.9432 1.0126 2.5298
38 1 4.3706 1.9476 3.1331
39 1 3.7220 3.5793 2.7864
40 1 3.8642 4.2453 5.0276
41 1 5.1094 2.9623 5.1096
42 1 3.3274 0.8613 7.3732
43 1 4.6366 0.8329 6.1675
44 1 4.5953 2.1101 7.4066
45 1 1.3184 3.2086 6.4838
46 1 1.3602 5.6473 7.6302
47 1 1.2312 4.4040 8.8974
48 1 1.4049 7.3908 9.3461
49 1 1.2772 6.1475 10.6133
50 1 2.6458 7.2858 10.6174
51 1 2.7644 0.4927 4.7633
52 1 1.2877 1.3736 5.2599
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001375802227.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:23
Heat of formation + Delta-G solvation = -95.209310 kcal
Electronic energy + Delta-G solvation = -30948.397551 eV
Core-core repulsion = 26755.880795 eV
Total energy + Delta-G solvation = -4192.516755 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.63948 -39.44013 -38.36342 -37.38438 -35.37680 -34.51938 -32.83989 -31.99567
-30.11842 -29.84216 -28.73532 -28.22497 -26.67412 -26.15380 -24.70057 -23.06575
-22.50199 -21.50961 -21.17159 -19.66063 -18.29337 -17.58669 -16.99308 -16.61642
-16.55526 -16.31492 -16.11620 -15.85602 -15.07733 -14.88746 -14.80619 -14.55324
-14.34377 -14.07331 -13.71393 -13.39935 -13.33298 -13.14535 -12.83939 -12.73707
-12.57220 -12.28500 -12.21022 -12.03814 -12.00260 -11.81728 -11.77514 -11.45326
-11.24411 -11.10555 -11.07023 -10.91064 -10.84427 -10.61223 -10.53146 -10.15708
-10.10426 -9.74014 -9.62440 -9.23228 -8.82698 -8.44640 -8.32528 -7.66351
-6.05292 -4.09963 2.45522 2.59354 3.28798 3.35982 3.38484 3.43328
3.67024 3.76345 4.17441 4.30383 4.44149 4.55106 4.69385 4.75017
4.82347 4.92307 4.95528 5.00765 5.03652 5.21908 5.28173 5.29540
5.30414 5.36798 5.39563 5.40801 5.50172 5.52036 5.61927 5.65787
5.72345 5.77782 5.96789 6.00719 6.10409 6.20477 6.22042 6.43555
6.45828 6.47667 6.62944 6.89337 6.91914 7.11219 7.35950 7.45152
7.55472 7.91511 8.09205 8.22780 8.42060 8.90041 9.10964 9.55348
11.02718
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.014922 B = 0.002361 C = 0.002232
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1875.920118 B =11858.118292 C =12543.192892
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.106 3.894
3 N -0.598 5.598
4 C 0.247 3.753
5 C -0.524 4.524
6 H 0.056 0.944
7 C 0.060 3.940
8 N -0.894 5.894
9 Si 0.897 3.103
10 H -0.274 1.274
11 H -0.284 1.284
12 H -0.283 1.283
13 C 0.506 3.494
14 O -0.526 6.526
15 C 0.025 3.975
16 N -0.490 5.490
17 C 0.030 3.970
18 C -0.122 4.122
19 C 0.176 3.824
20 C -0.160 4.160
21 N -0.713 5.713
22 C 0.514 3.486
23 O -0.515 6.515
24 C 0.042 3.958
25 O -0.366 6.366
26 C 0.030 3.970
27 C 0.029 3.971
28 H 0.051 0.949
29 H 0.061 0.939
30 H 0.059 0.941
31 H 0.082 0.918
32 H 0.062 0.938
33 H 0.031 0.969
34 H 0.043 0.957
35 H 0.263 0.737
36 H 0.059 0.941
37 H 0.098 0.902
38 H 0.040 0.960
39 H 0.117 0.883
40 H 0.075 0.925
41 H 0.075 0.925
42 H 0.054 0.946
43 H 0.064 0.936
44 H 0.083 0.917
45 H 0.401 0.599
46 H 0.081 0.919
47 H 0.078 0.922
48 H 0.044 0.956
49 H 0.043 0.957
50 H 0.090 0.910
51 H 0.059 0.941
52 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.541 -4.140 23.452 25.300
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.018 4.018
3 N -0.330 5.330
4 C 0.128 3.872
5 C -0.563 4.563
6 H 0.075 0.925
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.725 3.275
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.209 1.209
13 C 0.292 3.708
14 O -0.403 6.403
15 C -0.107 4.107
16 N -0.214 5.214
17 C -0.097 4.097
18 C -0.161 4.161
19 C 0.090 3.910
20 C -0.218 4.218
21 N -0.367 5.367
22 C 0.299 3.701
23 O -0.389 6.389
24 C -0.038 4.038
25 O -0.284 6.284
26 C -0.067 4.067
27 C -0.100 4.100
28 H 0.070 0.930
29 H 0.080 0.920
30 H 0.078 0.922
31 H 0.100 0.900
32 H 0.080 0.920
33 H 0.049 0.951
34 H 0.061 0.939
35 H 0.072 0.928
36 H 0.077 0.923
37 H 0.116 0.884
38 H 0.058 0.942
39 H 0.134 0.866
40 H 0.094 0.906
41 H 0.094 0.906
42 H 0.073 0.927
43 H 0.083 0.917
44 H 0.102 0.898
45 H 0.236 0.764
46 H 0.099 0.901
47 H 0.096 0.904
48 H 0.063 0.937
49 H 0.061 0.939
50 H 0.109 0.891
51 H 0.078 0.922
52 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -7.645 -2.980 23.354 24.753
hybrid contribution 0.565 -0.933 -0.572 1.231
sum -7.081 -3.913 22.782 24.175
Atomic orbital electron populations
1.22222 0.96757 1.01356 1.02393 1.21409 0.93544 0.84301 1.02548
1.48247 1.63917 1.13168 1.07684 1.19258 0.96196 0.93661 0.78055
1.21452 0.96911 1.31784 1.06190 0.92545 1.24939 0.97818 0.94954
0.96438 1.69942 1.35563 1.33461 1.14354 0.86459 0.84691 0.78071
0.78288 1.19861 1.20991 1.20852 1.20067 0.78874 0.87086 0.84804
1.90616 1.45139 1.17835 1.86668 1.22324 1.02612 0.94727 0.91030
1.65324 1.26371 1.29829 0.99917 1.23417 0.87391 1.01853 0.97055
1.22740 0.99131 1.00664 0.93532 1.21016 0.90195 0.89479 0.90350
1.22229 1.00136 0.99432 1.00021 1.45985 1.10544 1.39521 1.40633
1.20163 0.89156 0.80656 0.80091 1.90701 1.14949 1.67383 1.65887
1.22262 0.93355 0.94301 0.93885 1.88021 1.32565 1.53255 1.54567
1.22837 0.96987 0.92573 0.94283 1.23445 1.00194 0.95684 0.90628
0.93033 0.91993 0.92227 0.89966 0.91987 0.95078 0.93870 0.92778
0.92325 0.88382 0.94205 0.86551 0.90600 0.90647 0.92650 0.91664
0.89841 0.76403 0.90126 0.90414 0.93723 0.93882 0.89106 0.92245
0.89644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16
2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16
3 N -0.60 -12.23 2.46 -175.06 -0.43 -12.66 16
4 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16
5 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16
6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16
7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16
8 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16
9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16
10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
13 C 0.51 10.16 7.39 -10.99 -0.08 10.08 16
14 O -0.53 -12.78 13.24 5.55 0.07 -12.71 16
15 C 0.02 0.35 4.10 -4.97 -0.02 0.33 16
16 N -0.49 -6.89 5.33 -231.42 -1.23 -8.12 16
17 C 0.03 0.48 5.32 -2.19 -0.01 0.47 16
18 C -0.12 -1.68 5.59 -25.34 -0.14 -1.82 16
19 C 0.18 1.92 1.01 -130.43 -0.13 1.79 16
20 C -0.16 -1.65 8.14 37.16 0.30 -1.35 16
21 N -0.71 -6.77 5.08 -46.33 -0.24 -7.01 16
22 C 0.51 5.85 7.11 -10.98 -0.08 5.77 16
23 O -0.51 -8.01 13.80 -14.35 -0.20 -8.21 16
24 C 0.04 0.35 6.42 36.00 0.23 0.58 16
25 O -0.37 -3.97 10.24 -55.14 -0.56 -4.53 16
26 C 0.03 0.19 11.01 101.05 1.11 1.30 16
27 C 0.03 0.30 5.68 -2.19 -0.01 0.28 16
28 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16
29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16
32 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16
33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16
34 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16
35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
36 H 0.06 0.76 7.14 -51.93 -0.37 0.39 16
37 H 0.10 1.19 7.18 -51.93 -0.37 0.82 16
38 H 0.04 0.64 8.00 -51.93 -0.42 0.23 16
39 H 0.12 2.28 6.04 -51.93 -0.31 1.97 16
40 H 0.08 1.16 7.51 -51.93 -0.39 0.77 16
41 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16
42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16
43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
44 H 0.08 1.05 6.06 -51.93 -0.31 0.73 16
45 H 0.40 2.74 8.28 -40.82 -0.34 2.40 16
46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
48 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16
49 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16
50 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16
51 H 0.06 0.56 7.54 -51.93 -0.39 0.17 16
52 H 0.09 0.69 7.77 -51.93 -0.40 0.29 16
LS Contribution 412.08 15.07 6.21 6.21
Total: -1.00 -36.07 412.08 -8.58 -44.65
By element:
Atomic # 1 Polarization: 10.09 SS G_CDS: -8.99 Total: 1.10 kcal
Atomic # 6 Polarization: 9.12 SS G_CDS: 1.08 Total: 10.20 kcal
Atomic # 7 Polarization: -52.40 SS G_CDS: -1.16 Total: -53.57 kcal
Atomic # 8 Polarization: -24.76 SS G_CDS: -0.69 Total: -25.45 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal
Total LS contribution 6.21 Total: 6.21 kcal
Total: -36.07 -8.58 -44.65 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001375802227.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.560 kcal
(2) G-P(sol) polarization free energy of solvation -36.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds