Wall clock time and date at job start Sat Apr 11 2020 06:27:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46496 * 109.47050 * 2 1
4 4 C 1.46505 * 119.99678 * 269.99299 * 3 2 1
5 5 C 1.50696 * 109.47271 * 270.00460 * 4 3 2
6 6 H 1.07993 * 120.00208 * 359.97438 * 5 4 3
7 7 C 1.37878 * 119.99905 * 180.02562 * 5 4 3
8 8 N 1.31522 * 120.00047 * 359.97438 * 7 5 4
9 9 Si 1.86796 * 120.00138 * 179.97438 * 7 5 4
10 10 H 1.48498 * 109.47310 * 0.02562 * 9 7 5
11 11 H 1.48502 * 109.47109 * 120.00304 * 9 7 5
12 12 H 1.48502 * 109.47333 * 239.99877 * 9 7 5
13 13 C 1.34766 * 120.00364 * 90.00068 * 3 2 1
14 14 O 1.21284 * 120.00218 * 179.97438 * 13 3 2
15 15 C 1.50707 * 119.99900 * 359.97438 * 13 3 2
16 16 N 1.46905 * 109.47022 * 180.02562 * 15 13 3
17 17 C 1.48556 * 111.00234 * 305.42155 * 16 15 13
18 18 C 1.54377 * 104.59714 * 200.96207 * 17 16 15
19 19 C 1.54271 * 105.05657 * 23.84545 * 18 17 16
20 20 C 1.53003 * 110.40556 * 118.94697 * 19 18 17
21 21 N 1.46499 * 110.32425 * 241.10567 * 19 18 17
22 22 C 1.34784 * 119.99971 * 295.63991 * 21 19 18
23 23 O 1.21274 * 119.99897 * 359.72827 * 22 21 19
24 24 C 1.50695 * 119.99635 * 179.97438 * 22 21 19
25 25 O 1.42906 * 109.47045 * 180.02562 * 24 22 21
26 26 C 1.42897 * 114.00168 * 180.02562 * 25 24 22
27 27 C 1.48554 * 110.99795 * 189.99787 * 16 15 13
28 28 H 1.08993 * 109.47239 * 300.00261 * 1 2 3
29 29 H 1.09003 * 109.47047 * 60.00427 * 1 2 3
30 30 H 1.09003 * 109.47189 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.46891 * 239.99619 * 2 1 3
32 32 H 1.09000 * 109.46902 * 120.00066 * 2 1 3
33 33 H 1.09005 * 109.46818 * 30.00571 * 4 3 2
34 34 H 1.08998 * 109.46815 * 150.00246 * 4 3 2
35 35 H 0.96997 * 120.00088 * 179.97438 * 8 7 5
36 36 H 1.08991 * 109.47105 * 59.99782 * 15 13 3
37 37 H 1.08998 * 109.46699 * 299.99888 * 15 13 3
38 38 H 1.09007 * 110.40762 * 319.73617 * 17 16 15
39 39 H 1.08994 * 110.41453 * 82.06056 * 17 16 15
40 40 H 1.09003 * 110.32138 * 264.95644 * 18 17 16
41 41 H 1.08994 * 110.33158 * 142.74020 * 18 17 16
42 42 H 1.09001 * 109.46652 * 182.88624 * 20 19 18
43 43 H 1.09000 * 109.46754 * 302.88005 * 20 19 18
44 44 H 1.08995 * 109.47406 * 62.88326 * 20 19 18
45 45 H 0.96999 * 119.99984 * 115.63839 * 21 19 18
46 46 H 1.09005 * 109.47403 * 300.00056 * 24 22 21
47 47 H 1.09002 * 109.47422 * 60.00295 * 24 22 21
48 48 H 1.08995 * 109.46993 * 300.00027 * 26 25 24
49 49 H 1.08995 * 109.47099 * 60.00204 * 26 25 24
50 50 H 1.08999 * 109.47109 * 180.02562 * 26 25 24
51 51 H 1.08998 * 110.41194 * 40.26214 * 27 16 15
52 52 H 1.09002 * 110.51015 * 277.87147 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0717 -1.2688
5 6 3.6859 1.8348 -1.7038
6 1 4.3429 1.2307 -1.0958
7 6 4.1495 2.3902 -2.8775
8 7 3.3495 3.1263 -3.6177
9 14 5.9139 2.0972 -3.4163
10 1 6.6012 1.2410 -2.4164
11 1 5.9219 1.4186 -4.7372
12 1 6.6212 3.3985 -3.5241
13 6 2.2430 2.0165 1.1671
14 8 2.6477 3.1599 1.1670
15 6 1.9913 1.3063 2.4723
16 7 2.3091 2.2066 3.5888
17 6 3.6936 2.7321 3.4716
18 6 4.0619 3.1807 4.9021
19 6 3.1481 2.3531 5.8294
20 6 3.9872 1.4763 6.7612
21 7 2.2797 3.2379 6.6099
22 6 2.8165 4.0926 7.5032
23 8 4.0181 4.1257 7.6644
24 6 1.9232 5.0031 8.3056
25 8 2.7216 5.8079 9.1757
26 6 1.9676 6.7115 9.9863
27 6 2.3048 1.4740 4.8811
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0277 0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.5818 1.6875 -2.0285
34 1 2.0957 3.1409 -1.1385
35 1 3.6758 3.5173 -4.4432
36 1 2.6211 0.4187 2.5302
37 1 0.9432 1.0126 2.5298
38 1 4.3706 1.9476 3.1331
39 1 3.7220 3.5793 2.7864
40 1 3.8642 4.2453 5.0276
41 1 5.1094 2.9623 5.1096
42 1 3.3274 0.8613 7.3732
43 1 4.6366 0.8329 6.1675
44 1 4.5953 2.1101 7.4066
45 1 1.3184 3.2086 6.4838
46 1 1.3602 5.6473 7.6302
47 1 1.2312 4.4040 8.8974
48 1 1.4049 7.3908 9.3461
49 1 1.2772 6.1475 10.6133
50 1 2.6458 7.2858 10.6174
51 1 2.7644 0.4927 4.7633
52 1 1.2877 1.3736 5.2599
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001375802227.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:22
Heat of formation + Delta-G solvation = -123.542447 kcal
Electronic energy + Delta-G solvation = -30949.626168 eV
Core-core repulsion = 26755.880795 eV
Total energy + Delta-G solvation = -4193.745372 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.62002 -40.75294 -39.39603 -38.22236 -36.93205 -35.59567 -34.89834 -33.00430
-31.59014 -30.89566 -29.67592 -29.36149 -28.14832 -26.77489 -25.91752 -24.69654
-23.90783 -22.61868 -22.11275 -20.62369 -19.76037 -18.64909 -18.37262 -17.86315
-17.77262 -17.37633 -17.18739 -16.90891 -16.54082 -16.19611 -15.85789 -15.67509
-15.49648 -15.36241 -14.89685 -14.64106 -14.41141 -14.22023 -13.96919 -13.94244
-13.58331 -13.50739 -13.30007 -13.20192 -13.12486 -13.05139 -12.96848 -12.73179
-12.68657 -12.50416 -12.34131 -12.28124 -12.13565 -11.96147 -11.95014 -11.73183
-11.65166 -10.74596 -10.66248 -10.64406 -10.42574 -10.05495 -9.47566 -9.37672
-8.23460 -6.37995 1.33630 1.36419 1.47557 1.62271 1.88104 1.88670
2.24538 2.40357 3.02471 3.05881 3.15201 3.39254 3.60107 3.81384
3.85709 3.96725 4.10611 4.20375 4.22777 4.30160 4.34353 4.37748
4.42752 4.49213 4.51545 4.58438 4.63411 4.64749 4.70498 4.77048
4.81555 4.86042 4.87616 4.96238 5.01975 5.07882 5.12051 5.19446
5.23301 5.30119 5.42728 5.56508 5.59010 5.77260 5.86176 5.93546
6.06745 6.07602 6.63887 6.70817 6.85228 7.28648 7.31057 7.55786
8.83441
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.014922 B = 0.002361 C = 0.002232
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1875.920118 B =11858.118292 C =12543.192892
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.099 3.901
3 N -0.604 5.604
4 C 0.264 3.736
5 C -0.538 4.538
6 H 0.052 0.948
7 C 0.006 3.994
8 N -0.928 5.928
9 Si 0.965 3.035
10 H -0.267 1.267
11 H -0.268 1.268
12 H -0.284 1.284
13 C 0.493 3.507
14 O -0.581 6.581
15 C 0.039 3.961
16 N -0.503 5.503
17 C 0.037 3.963
18 C -0.116 4.116
19 C 0.178 3.822
20 C -0.153 4.153
21 N -0.700 5.700
22 C 0.507 3.493
23 O -0.565 6.565
24 C 0.044 3.956
25 O -0.408 6.408
26 C 0.025 3.975
27 C 0.036 3.964
28 H 0.064 0.936
29 H 0.035 0.965
30 H 0.095 0.905
31 H 0.069 0.931
32 H 0.101 0.899
33 H 0.020 0.980
34 H -0.006 1.006
35 H 0.266 0.734
36 H 0.085 0.915
37 H 0.135 0.865
38 H 0.033 0.967
39 H 0.068 0.932
40 H 0.051 0.949
41 H 0.068 0.932
42 H 0.078 0.922
43 H 0.071 0.929
44 H 0.057 0.943
45 H 0.417 0.583
46 H 0.099 0.901
47 H 0.114 0.886
48 H 0.055 0.945
49 H 0.063 0.937
50 H 0.092 0.908
51 H 0.080 0.920
52 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.107 -7.033 25.563 28.374
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.023 4.023
3 N -0.336 5.336
4 C 0.143 3.857
5 C -0.576 4.576
6 H 0.070 0.930
7 C -0.193 4.193
8 N -0.568 5.568
9 Si 0.790 3.210
10 H -0.191 1.191
11 H -0.193 1.193
12 H -0.210 1.210
13 C 0.281 3.719
14 O -0.461 6.461
15 C -0.091 4.091
16 N -0.227 5.227
17 C -0.091 4.091
18 C -0.155 4.155
19 C 0.092 3.908
20 C -0.211 4.211
21 N -0.355 5.355
22 C 0.294 3.706
23 O -0.443 6.443
24 C -0.036 4.036
25 O -0.327 6.327
26 C -0.071 4.071
27 C -0.091 4.091
28 H 0.083 0.917
29 H 0.054 0.946
30 H 0.114 0.886
31 H 0.087 0.913
32 H 0.119 0.881
33 H 0.038 0.962
34 H 0.012 0.988
35 H 0.075 0.925
36 H 0.103 0.897
37 H 0.152 0.848
38 H 0.051 0.949
39 H 0.086 0.914
40 H 0.070 0.930
41 H 0.087 0.913
42 H 0.097 0.903
43 H 0.090 0.910
44 H 0.076 0.924
45 H 0.255 0.745
46 H 0.117 0.883
47 H 0.131 0.869
48 H 0.073 0.927
49 H 0.081 0.919
50 H 0.111 0.889
51 H 0.098 0.902
52 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -9.282 -5.928 25.481 27.759
hybrid contribution 1.015 0.017 -1.224 1.591
sum -8.267 -5.911 24.257 26.300
Atomic orbital electron populations
1.22151 0.94428 1.03498 1.01751 1.21756 0.95427 0.81283 1.03844
1.48275 1.64139 1.15108 1.06110 1.18646 0.95081 0.91438 0.80558
1.21720 0.97911 1.31684 1.06318 0.93008 1.25855 1.02261 0.94604
0.96576 1.70059 1.37620 1.34305 1.14854 0.85399 0.79203 0.77940
0.78454 1.19149 1.19337 1.20963 1.21212 0.77439 0.86754 0.86475
1.90616 1.47335 1.20544 1.87637 1.22288 1.05173 0.94292 0.87373
1.65283 1.24750 1.31171 1.01523 1.23109 0.88896 1.00074 0.96992
1.22624 0.99700 0.99768 0.93420 1.20953 0.90215 0.89311 0.90360
1.22146 1.00194 0.99059 0.99704 1.45878 1.11255 1.38748 1.39618
1.20844 0.88958 0.80746 0.80074 1.90683 1.17233 1.68898 1.67534
1.22392 0.92648 0.94332 0.94183 1.87963 1.34872 1.54337 1.55520
1.23014 0.97226 0.92487 0.94347 1.23563 1.02205 0.95559 0.87795
0.91749 0.94604 0.88584 0.91288 0.88053 0.96158 0.98784 0.92470
0.89749 0.84753 0.94856 0.91368 0.93004 0.91320 0.90331 0.91029
0.92448 0.74469 0.88276 0.86876 0.92659 0.91889 0.88941 0.90198
0.86123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16
2 C 0.10 2.83 5.93 86.38 0.51 3.34 16
3 N -0.60 -24.93 2.46 -826.15 -2.03 -26.96 16
4 C 0.26 14.30 5.16 85.63 0.44 14.74 16
5 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16
6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16
7 C 0.01 0.34 5.46 84.65 0.46 0.80 16
8 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16
9 Si 0.97 45.59 29.54 68.60 2.03 47.61 16
10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16
13 C 0.49 19.86 7.39 87.66 0.65 20.51 16
14 O -0.58 -29.81 13.24 -3.04 -0.04 -29.86 16
15 C 0.04 1.01 4.10 85.56 0.35 1.36 16
16 N -0.50 -13.11 5.33 -886.07 -4.73 -17.83 16
17 C 0.04 1.21 5.32 86.45 0.46 1.67 16
18 C -0.12 -3.28 5.59 31.49 0.18 -3.11 16
19 C 0.18 3.55 1.01 4.50 0.00 3.56 16
20 C -0.15 -2.84 8.14 71.98 0.59 -2.25 16
21 N -0.70 -11.82 5.08 -418.87 -2.13 -13.95 16
22 C 0.51 11.08 7.11 87.65 0.62 11.71 16
23 O -0.57 -18.01 13.80 16.02 0.22 -17.79 16
24 C 0.04 0.64 6.42 71.23 0.46 1.10 16
25 O -0.41 -8.53 10.24 -129.94 -1.33 -9.86 16
26 C 0.03 0.29 11.01 113.37 1.25 1.53 16
27 C 0.04 0.59 5.68 86.45 0.49 1.08 16
28 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16
29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16
30 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16
31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16
32 H 0.10 2.11 6.44 -2.39 -0.02 2.09 16
33 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16
34 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16
35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
36 H 0.08 1.79 7.14 -2.39 -0.02 1.77 16
37 H 0.13 2.55 7.18 -2.39 -0.02 2.53 16
38 H 0.03 1.09 8.00 -2.38 -0.02 1.07 16
39 H 0.07 2.90 6.04 -2.39 -0.01 2.89 16
40 H 0.05 1.69 7.51 -2.39 -0.02 1.67 16
41 H 0.07 1.99 7.71 -2.39 -0.02 1.97 16
42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
44 H 0.06 1.42 6.06 -2.39 -0.01 1.41 16
45 H 0.42 4.25 8.28 -92.71 -0.77 3.48 16
46 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16
47 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
48 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16
49 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
50 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
51 H 0.08 1.06 7.54 -2.39 -0.02 1.04 16
52 H 0.12 1.20 7.77 -2.39 -0.02 1.18 16
Total: -1.00 -87.12 412.08 -0.14 -87.26
By element:
Atomic # 1 Polarization: 15.56 SS G_CDS: 0.14 Total: 15.70 kcal
Atomic # 6 Polarization: 14.81 SS G_CDS: 7.44 Total: 22.24 kcal
Atomic # 7 Polarization: -106.71 SS G_CDS: -8.60 Total: -115.30 kcal
Atomic # 8 Polarization: -56.36 SS G_CDS: -1.15 Total: -57.51 kcal
Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal
Total: -87.12 -0.14 -87.26 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001375802227.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.279 kcal
(2) G-P(sol) polarization free energy of solvation -87.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.399 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.263 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds