Wall clock time and date at job start Sat Apr 11 2020 06:27:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46504 * 109.47061 * 2 1
4 4 C 1.46498 * 119.99846 * 269.99974 * 3 2 1
5 5 C 1.52999 * 109.47345 * 269.99971 * 4 3 2
6 6 N 1.46893 * 109.47599 * 180.02562 * 5 4 3
7 7 C 1.46894 * 111.00312 * 180.02562 * 6 5 4
8 8 C 1.50703 * 109.47277 * 180.02562 * 7 6 5
9 9 O 1.21295 * 119.99771 * 359.97438 * 8 7 6
10 10 N 1.34776 * 120.00260 * 179.97438 * 8 7 6
11 11 C 1.37096 * 120.00030 * 179.97438 * 10 8 7
12 12 H 1.07996 * 119.99889 * 359.97438 * 11 10 8
13 13 C 1.38950 * 119.99735 * 180.02562 * 11 10 8
14 14 N 1.31408 * 120.00405 * 0.02562 * 13 11 10
15 15 Si 1.86798 * 119.99876 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.47230 * 60.00088 * 15 13 11
17 17 H 1.48497 * 109.47321 * 180.02562 * 15 13 11
18 18 H 1.48499 * 109.47248 * 300.00171 * 15 13 11
19 19 C 1.34775 * 119.99895 * 89.99951 * 3 2 1
20 20 O 1.21275 * 119.99989 * 179.97438 * 19 3 2
21 21 C 1.50700 * 119.99849 * 0.02562 * 19 3 2
22 22 C 1.52997 * 109.46977 * 179.97438 * 21 19 3
23 23 H 1.08998 * 109.52642 * 54.87396 * 22 21 19
24 24 C 1.53178 * 109.52234 * 175.00119 * 22 21 19
25 25 C 1.53176 * 109.03609 * 176.95006 * 24 22 21
26 26 C 1.53095 * 109.16286 * 303.01594 * 25 24 22
27 27 O 1.42903 * 109.41530 * 57.61206 * 26 25 24
28 28 C 1.42906 * 114.09431 * 298.84283 * 27 26 25
29 29 H 1.09008 * 109.46976 * 59.99577 * 1 2 3
30 30 H 1.09004 * 109.47149 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47490 * 300.00314 * 1 2 3
32 32 H 1.09006 * 109.46661 * 240.00063 * 2 1 3
33 33 H 1.08999 * 109.47038 * 120.00197 * 2 1 3
34 34 H 1.08995 * 109.47213 * 30.00228 * 4 3 2
35 35 H 1.08998 * 109.46813 * 149.99970 * 4 3 2
36 36 H 1.09007 * 109.47013 * 300.00712 * 5 4 3
37 37 H 1.09004 * 109.46592 * 59.99817 * 5 4 3
38 38 H 1.00904 * 110.99709 * 303.95960 * 6 5 4
39 39 H 1.09008 * 109.46784 * 299.99545 * 7 6 5
40 40 H 1.08995 * 109.47628 * 59.99782 * 7 6 5
41 41 H 0.97000 * 119.99954 * 359.97438 * 10 8 7
42 42 H 0.96996 * 120.00409 * 180.02562 * 14 13 11
43 43 H 1.09000 * 109.47164 * 59.99808 * 21 19 3
44 44 H 1.08999 * 109.47315 * 300.00169 * 21 19 3
45 45 H 1.08994 * 109.54691 * 57.08027 * 24 22 21
46 46 H 1.08998 * 109.54245 * 296.81203 * 24 22 21
47 47 H 1.09001 * 109.52789 * 62.92535 * 25 24 22
48 48 H 1.09007 * 109.52321 * 183.11250 * 25 24 22
49 49 H 1.08997 * 109.47843 * 177.59528 * 26 25 24
50 50 H 1.08997 * 109.48336 * 297.62823 * 26 25 24
51 51 H 1.08998 * 109.48318 * 301.17291 * 28 27 26
52 52 H 1.09003 * 109.48829 * 181.14669 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.7075 1.8315 -1.7104
6 7 3.9525 2.5244 -2.9823
7 6 5.3330 2.3149 -3.4385
8 6 5.5466 3.0395 -4.7425
9 8 4.6379 3.6682 -5.2429
10 7 6.7472 2.9890 -5.3528
11 6 6.9413 3.6478 -6.5393
12 1 6.1320 4.2068 -6.9852
13 6 8.1790 3.5953 -7.1687
14 7 9.1633 2.9138 -6.6269
15 14 8.4432 4.4922 -8.7858
16 1 8.2008 5.9444 -8.5918
17 1 9.8387 4.2802 -9.2472
18 1 7.5001 3.9647 -9.8044
19 6 2.2430 2.0166 1.1672
20 8 2.6476 3.1598 1.1672
21 6 1.9923 1.3059 2.4723
22 6 2.3242 2.2431 3.6352
23 1 1.7606 3.1700 3.5284
24 6 1.9526 1.5678 4.9589
25 6 2.3592 2.4829 6.1180
26 6 3.8572 2.7833 6.0195
27 8 4.1393 3.3818 4.7529
28 6 3.8235 2.5528 3.6326
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8901
33 1 1.8933 -0.5139 0.8900
34 1 1.5817 1.6877 -2.0283
35 1 2.0955 3.1410 -1.1384
36 1 4.3883 2.2155 -0.9507
37 1 3.8744 0.7622 -1.8407
38 1 3.2911 2.2326 -3.6863
39 1 6.0254 2.7018 -2.6907
40 1 5.5108 1.2491 -3.5813
41 1 7.4740 2.4866 -4.9525
42 1 10.0274 2.8775 -7.0661
43 1 2.6228 0.4187 2.5298
44 1 0.9445 1.0113 2.5302
45 1 2.4785 0.6168 5.0433
46 1 0.8769 1.3951 4.9908
47 1 1.7964 3.4146 6.0614
48 1 2.1489 1.9862 7.0653
49 1 4.1437 3.4685 6.8173
50 1 4.4212 1.8557 6.1169
51 1 4.3870 1.6221 3.6987
52 1 4.0858 3.0718 2.7107
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001668646028.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:59
Heat of formation + Delta-G solvation = -130.213675 kcal
Electronic energy + Delta-G solvation = -29813.294515 eV
Core-core repulsion = 25619.259857 eV
Total energy + Delta-G solvation = -4194.034658 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.64205 -39.29416 -38.25734 -36.67600 -35.32402 -34.70763 -33.81547 -32.46237
-31.39169 -31.12282 -29.48094 -27.78324 -25.86544 -25.30950 -24.05021 -23.83647
-22.92672 -21.95230 -20.44503 -19.37024 -18.96972 -17.86139 -17.39334 -16.80549
-16.54644 -16.23279 -16.20290 -15.54409 -15.46060 -14.95371 -14.77099 -14.51266
-14.44522 -14.28586 -14.07376 -13.76858 -13.46805 -13.32669 -13.27153 -13.05509
-12.96174 -12.80157 -12.31249 -12.25372 -12.02181 -11.92402 -11.66185 -11.55211
-11.50965 -11.47804 -11.24960 -11.16015 -11.06789 -10.93578 -10.60034 -10.42143
-10.19071 -9.86525 -9.70209 -9.47556 -8.97284 -8.42874 -8.04880 -7.93464
-6.39092 -3.79925 2.40679 2.66122 3.22348 3.27709 3.32430 3.66227
3.93589 4.07267 4.15994 4.32785 4.38404 4.42076 4.49102 4.55428
4.58858 4.76468 4.77686 4.93713 4.94833 5.02578 5.06710 5.12535
5.15224 5.19823 5.21829 5.25805 5.29072 5.34516 5.36445 5.42665
5.46559 5.53167 5.59501 5.66240 5.75473 5.77142 5.88075 5.92845
5.98646 5.99650 6.03018 6.26223 6.33598 6.99107 7.13027 7.20562
7.57527 7.66717 7.97890 8.08687 8.63969 9.20262 9.56855 10.08454
10.78624
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.015592 B = 0.001825 C = 0.001682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.353220 B =15341.508729 C =16645.595542
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.102 3.898
3 N -0.612 5.612
4 C 0.117 3.883
5 C 0.048 3.952
6 N -0.665 5.665
7 C 0.053 3.947
8 C 0.441 3.559
9 O -0.583 6.583
10 N -0.564 5.564
11 C -0.300 4.300
12 H 0.103 0.897
13 C 0.022 3.978
14 N -0.902 5.902
15 Si 0.932 3.068
16 H -0.273 1.273
17 H -0.285 1.285
18 H -0.274 1.274
19 C 0.510 3.490
20 O -0.525 6.525
21 C -0.134 4.134
22 C -0.108 4.108
23 H 0.089 0.911
24 C -0.118 4.118
25 C -0.156 4.156
26 C 0.056 3.944
27 O -0.378 6.378
28 C 0.061 3.939
29 H 0.061 0.939
30 H 0.068 0.932
31 H 0.057 0.943
32 H 0.081 0.919
33 H 0.079 0.921
34 H 0.075 0.925
35 H 0.096 0.904
36 H 0.074 0.926
37 H 0.024 0.976
38 H 0.348 0.652
39 H 0.086 0.914
40 H 0.043 0.957
41 H 0.392 0.608
42 H 0.272 0.728
43 H 0.093 0.907
44 H 0.096 0.904
45 H 0.064 0.936
46 H 0.068 0.932
47 H 0.072 0.928
48 H 0.072 0.928
49 H 0.091 0.909
50 H 0.048 0.952
51 H 0.043 0.957
52 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.597 -11.824 25.062 31.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.021 4.021
3 N -0.346 5.346
4 C -0.006 4.006
5 C -0.082 4.082
6 N -0.298 5.298
7 C -0.079 4.079
8 C 0.227 3.773
9 O -0.467 6.467
10 N -0.200 5.200
11 C -0.429 4.429
12 H 0.120 0.880
13 C -0.180 4.180
14 N -0.544 5.544
15 Si 0.759 3.241
16 H -0.199 1.199
17 H -0.210 1.210
18 H -0.199 1.199
19 C 0.298 3.702
20 O -0.401 6.401
21 C -0.174 4.174
22 C -0.127 4.127
23 H 0.107 0.893
24 C -0.155 4.155
25 C -0.193 4.193
26 C -0.021 4.021
27 O -0.296 6.296
28 C -0.015 4.015
29 H 0.080 0.920
30 H 0.086 0.914
31 H 0.076 0.924
32 H 0.100 0.900
33 H 0.097 0.903
34 H 0.094 0.906
35 H 0.114 0.886
36 H 0.092 0.908
37 H 0.042 0.958
38 H 0.167 0.833
39 H 0.104 0.896
40 H 0.061 0.939
41 H 0.225 0.775
42 H 0.082 0.918
43 H 0.111 0.889
44 H 0.114 0.886
45 H 0.083 0.917
46 H 0.086 0.914
47 H 0.091 0.909
48 H 0.091 0.909
49 H 0.109 0.891
50 H 0.066 0.934
51 H 0.061 0.939
52 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -15.567 -10.023 24.921 31.046
hybrid contribution 0.467 -1.367 -0.867 1.685
sum -15.100 -11.390 24.054 30.600
Atomic orbital electron populations
1.22226 0.95693 1.02404 1.02769 1.21610 0.94581 0.82435 1.03483
1.48005 1.66068 1.14347 1.06205 1.21403 0.95769 0.99537 0.83906
1.22259 0.97099 0.95620 0.93256 1.59934 1.03969 1.60963 1.04918
1.21652 0.90891 0.98160 0.97235 1.19794 0.84214 0.86422 0.86918
1.90521 1.42603 1.46420 1.67154 1.41852 1.10698 1.46108 1.21371
1.19662 0.97909 1.27682 0.97670 0.87952 1.25265 0.95167 0.97639
0.99904 1.69603 1.03182 1.41389 1.40193 0.85906 0.77125 0.79800
0.81310 1.19860 1.20996 1.19947 1.20701 0.77341 0.86840 0.85344
1.90738 1.44570 1.17682 1.87068 1.21748 1.03924 0.99669 0.92077
1.21582 0.98775 0.99344 0.93033 0.89300 1.21654 1.01505 0.98472
0.93889 1.22184 0.97685 1.00732 0.98734 1.22586 0.94420 0.98384
0.86704 1.88012 1.85001 1.42904 1.13713 1.22867 0.93055 0.95182
0.90398 0.91966 0.91355 0.92423 0.90038 0.90283 0.90617 0.88585
0.90780 0.95752 0.83297 0.89563 0.93948 0.77457 0.91836 0.88859
0.88575 0.91747 0.91372 0.90922 0.90914 0.89057 0.93408 0.93912
0.86884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16
2 C 0.10 0.58 5.93 -4.04 -0.02 0.56 16
3 N -0.61 -5.59 2.47 -173.69 -0.43 -6.02 16
4 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16
5 C 0.05 0.63 6.01 -3.83 -0.02 0.61 16
6 N -0.67 -11.18 6.13 -115.06 -0.70 -11.88 16
7 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16
8 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16
9 O -0.58 -16.20 15.78 5.54 0.09 -16.11 16
10 N -0.56 -14.63 5.29 -10.96 -0.06 -14.69 16
11 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16
12 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16
13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
14 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16
15 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16
16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
19 C 0.51 5.32 7.41 -10.99 -0.08 5.24 16
20 O -0.52 -7.74 13.57 5.56 0.08 -7.66 16
21 C -0.13 -0.91 3.73 -27.88 -0.10 -1.01 16
22 C -0.11 -0.89 2.03 -90.48 -0.18 -1.07 16
23 H 0.09 0.92 7.95 -51.93 -0.41 0.50 16
24 C -0.12 -0.70 5.31 -26.55 -0.14 -0.84 16
25 C -0.16 -0.98 6.14 -26.59 -0.16 -1.14 16
26 C 0.06 0.43 6.84 37.21 0.25 0.69 16
27 O -0.38 -4.37 10.77 -35.23 -0.38 -4.75 16
28 C 0.06 0.64 5.84 37.21 0.22 0.85 16
29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16
30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
31 H 0.06 0.29 7.22 -51.93 -0.38 -0.09 16
32 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16
33 H 0.08 0.31 6.44 -51.93 -0.33 -0.02 16
34 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16
35 H 0.10 1.34 7.42 -51.93 -0.39 0.96 16
36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16
38 H 0.35 5.77 8.43 -39.29 -0.33 5.44 16
39 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16
40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16
42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
43 H 0.09 0.47 7.40 -51.93 -0.38 0.08 16
44 H 0.10 0.47 7.19 -51.93 -0.37 0.10 16
45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
48 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16
49 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
50 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
51 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16
52 H 0.11 1.46 6.04 -51.93 -0.31 1.15 16
LS Contribution 415.69 15.07 6.26 6.26
Total: -1.00 -34.61 415.69 -8.77 -43.38
By element:
Atomic # 1 Polarization: 20.23 SS G_CDS: -9.08 Total: 11.16 kcal
Atomic # 6 Polarization: 8.38 SS G_CDS: -0.25 Total: 8.14 kcal
Atomic # 7 Polarization: -56.29 SS G_CDS: -0.47 Total: -56.76 kcal
Atomic # 8 Polarization: -28.31 SS G_CDS: -0.22 Total: -28.53 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -34.61 -8.77 -43.38 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001668646028.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -86.835 kcal
(2) G-P(sol) polarization free energy of solvation -34.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.445 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.214 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds