Wall clock time and date at job start Sat Apr 11 2020 06:27:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46504 * 109.47061 * 2 1
4 4 C 1.46498 * 119.99846 * 269.99974 * 3 2 1
5 5 C 1.52999 * 109.47345 * 269.99971 * 4 3 2
6 6 N 1.46893 * 109.47599 * 180.02562 * 5 4 3
7 7 C 1.46894 * 111.00312 * 180.02562 * 6 5 4
8 8 C 1.50703 * 109.47277 * 180.02562 * 7 6 5
9 9 O 1.21295 * 119.99771 * 359.97438 * 8 7 6
10 10 N 1.34776 * 120.00260 * 179.97438 * 8 7 6
11 11 C 1.37096 * 120.00030 * 179.97438 * 10 8 7
12 12 H 1.07996 * 119.99889 * 359.97438 * 11 10 8
13 13 C 1.38950 * 119.99735 * 180.02562 * 11 10 8
14 14 N 1.31408 * 120.00405 * 0.02562 * 13 11 10
15 15 Si 1.86798 * 119.99876 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.47230 * 60.00088 * 15 13 11
17 17 H 1.48497 * 109.47321 * 180.02562 * 15 13 11
18 18 H 1.48499 * 109.47248 * 300.00171 * 15 13 11
19 19 C 1.34775 * 119.99895 * 89.99951 * 3 2 1
20 20 O 1.21275 * 119.99989 * 179.97438 * 19 3 2
21 21 C 1.50700 * 119.99849 * 0.02562 * 19 3 2
22 22 C 1.52997 * 109.46977 * 179.97438 * 21 19 3
23 23 H 1.08998 * 109.52642 * 54.87396 * 22 21 19
24 24 C 1.53178 * 109.52234 * 175.00119 * 22 21 19
25 25 C 1.53176 * 109.03609 * 176.95006 * 24 22 21
26 26 C 1.53095 * 109.16286 * 303.01594 * 25 24 22
27 27 O 1.42903 * 109.41530 * 57.61206 * 26 25 24
28 28 C 1.42906 * 114.09431 * 298.84283 * 27 26 25
29 29 H 1.09008 * 109.46976 * 59.99577 * 1 2 3
30 30 H 1.09004 * 109.47149 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47490 * 300.00314 * 1 2 3
32 32 H 1.09006 * 109.46661 * 240.00063 * 2 1 3
33 33 H 1.08999 * 109.47038 * 120.00197 * 2 1 3
34 34 H 1.08995 * 109.47213 * 30.00228 * 4 3 2
35 35 H 1.08998 * 109.46813 * 149.99970 * 4 3 2
36 36 H 1.09007 * 109.47013 * 300.00712 * 5 4 3
37 37 H 1.09004 * 109.46592 * 59.99817 * 5 4 3
38 38 H 1.00904 * 110.99709 * 303.95960 * 6 5 4
39 39 H 1.09008 * 109.46784 * 299.99545 * 7 6 5
40 40 H 1.08995 * 109.47628 * 59.99782 * 7 6 5
41 41 H 0.97000 * 119.99954 * 359.97438 * 10 8 7
42 42 H 0.96996 * 120.00409 * 180.02562 * 14 13 11
43 43 H 1.09000 * 109.47164 * 59.99808 * 21 19 3
44 44 H 1.08999 * 109.47315 * 300.00169 * 21 19 3
45 45 H 1.08994 * 109.54691 * 57.08027 * 24 22 21
46 46 H 1.08998 * 109.54245 * 296.81203 * 24 22 21
47 47 H 1.09001 * 109.52789 * 62.92535 * 25 24 22
48 48 H 1.09007 * 109.52321 * 183.11250 * 25 24 22
49 49 H 1.08997 * 109.47843 * 177.59528 * 26 25 24
50 50 H 1.08997 * 109.48336 * 297.62823 * 26 25 24
51 51 H 1.08998 * 109.48318 * 301.17291 * 28 27 26
52 52 H 1.09003 * 109.48829 * 181.14669 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.7075 1.8315 -1.7104
6 7 3.9525 2.5244 -2.9823
7 6 5.3330 2.3149 -3.4385
8 6 5.5466 3.0395 -4.7425
9 8 4.6379 3.6682 -5.2429
10 7 6.7472 2.9890 -5.3528
11 6 6.9413 3.6478 -6.5393
12 1 6.1320 4.2068 -6.9852
13 6 8.1790 3.5953 -7.1687
14 7 9.1633 2.9138 -6.6269
15 14 8.4432 4.4922 -8.7858
16 1 8.2008 5.9444 -8.5918
17 1 9.8387 4.2802 -9.2472
18 1 7.5001 3.9647 -9.8044
19 6 2.2430 2.0166 1.1672
20 8 2.6476 3.1598 1.1672
21 6 1.9923 1.3059 2.4723
22 6 2.3242 2.2431 3.6352
23 1 1.7606 3.1700 3.5284
24 6 1.9526 1.5678 4.9589
25 6 2.3592 2.4829 6.1180
26 6 3.8572 2.7833 6.0195
27 8 4.1393 3.3818 4.7529
28 6 3.8235 2.5528 3.6326
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8901
33 1 1.8933 -0.5139 0.8900
34 1 1.5817 1.6877 -2.0283
35 1 2.0955 3.1410 -1.1384
36 1 4.3883 2.2155 -0.9507
37 1 3.8744 0.7622 -1.8407
38 1 3.2911 2.2326 -3.6863
39 1 6.0254 2.7018 -2.6907
40 1 5.5108 1.2491 -3.5813
41 1 7.4740 2.4866 -4.9525
42 1 10.0274 2.8775 -7.0661
43 1 2.6228 0.4187 2.5298
44 1 0.9445 1.0113 2.5302
45 1 2.4785 0.6168 5.0433
46 1 0.8769 1.3951 4.9908
47 1 1.7964 3.4146 6.0614
48 1 2.1489 1.9862 7.0653
49 1 4.1437 3.4685 6.8173
50 1 4.4212 1.8557 6.1169
51 1 4.3870 1.6221 3.6987
52 1 4.0858 3.0718 2.7107
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001668646028.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:58
Heat of formation + Delta-G solvation = -156.034063 kcal
Electronic energy + Delta-G solvation = -29814.414171 eV
Core-core repulsion = 25619.259857 eV
Total energy + Delta-G solvation = -4195.154314 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.39286 -40.21284 -39.95827 -37.66165 -36.51138 -35.83138 -35.39083 -33.31577
-33.05915 -32.05116 -30.37250 -28.76267 -27.35401 -25.95035 -25.63430 -24.35909
-23.82801 -22.83237 -21.19056 -21.00031 -19.99363 -19.73986 -18.11695 -17.91588
-17.50143 -17.27772 -17.04454 -16.95331 -16.48254 -16.24293 -15.94453 -15.64500
-15.42537 -15.35605 -15.02767 -14.89384 -14.73112 -14.47556 -13.99561 -13.86372
-13.77708 -13.52746 -13.49374 -13.41355 -13.29778 -12.93394 -12.80457 -12.70840
-12.57484 -12.44757 -12.17528 -12.12971 -12.06399 -12.05154 -11.81080 -11.66692
-11.52024 -11.24310 -10.67777 -10.41235 -10.37005 -10.04023 -9.72693 -9.38743
-8.47996 -5.97272 1.39090 1.40993 1.52237 1.63973 1.91953 2.02053
2.28963 2.95501 3.00480 3.18737 3.48168 3.54351 3.77724 3.82717
3.92450 4.03650 4.04626 4.08162 4.12705 4.25439 4.28382 4.35205
4.38791 4.42782 4.45266 4.53549 4.56231 4.59088 4.62090 4.70463
4.75391 4.83721 4.86272 4.92895 4.96549 5.00532 5.02542 5.10476
5.12284 5.28139 5.39139 5.40684 5.43089 5.55242 5.83280 6.04768
6.31121 6.36069 6.44644 6.57698 7.10174 7.22184 7.53125 8.08292
8.69172
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.015592 B = 0.001825 C = 0.001682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.353220 B =15341.508729 C =16645.595542
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.096 3.904
3 N -0.608 5.608
4 C 0.123 3.877
5 C 0.059 3.941
6 N -0.684 5.684
7 C 0.068 3.932
8 C 0.437 3.563
9 O -0.623 6.623
10 N -0.572 5.572
11 C -0.337 4.337
12 H 0.079 0.921
13 C -0.013 4.013
14 N -0.920 5.920
15 Si 0.995 3.005
16 H -0.274 1.274
17 H -0.269 1.269
18 H -0.270 1.270
19 C 0.501 3.499
20 O -0.579 6.579
21 C -0.123 4.123
22 C -0.104 4.104
23 H 0.057 0.943
24 C -0.112 4.112
25 C -0.155 4.155
26 C 0.047 3.953
27 O -0.414 6.414
28 C 0.061 3.939
29 H 0.046 0.954
30 H 0.088 0.912
31 H 0.058 0.942
32 H 0.089 0.911
33 H 0.106 0.894
34 H 0.094 0.906
35 H 0.061 0.939
36 H 0.055 0.945
37 H 0.051 0.949
38 H 0.349 0.651
39 H 0.095 0.905
40 H 0.072 0.928
41 H 0.397 0.603
42 H 0.278 0.722
43 H 0.122 0.878
44 H 0.124 0.876
45 H 0.083 0.917
46 H 0.085 0.915
47 H 0.058 0.942
48 H 0.097 0.903
49 H 0.097 0.903
50 H 0.061 0.939
51 H 0.059 0.941
52 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.252 -14.806 26.279 34.263
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.025 4.025
3 N -0.341 5.341
4 C -0.001 4.001
5 C -0.071 4.071
6 N -0.317 5.317
7 C -0.064 4.064
8 C 0.224 3.776
9 O -0.509 6.509
10 N -0.209 5.209
11 C -0.466 4.466
12 H 0.097 0.903
13 C -0.213 4.213
14 N -0.560 5.560
15 Si 0.818 3.182
16 H -0.199 1.199
17 H -0.194 1.194
18 H -0.195 1.195
19 C 0.291 3.709
20 O -0.459 6.459
21 C -0.163 4.163
22 C -0.123 4.123
23 H 0.076 0.924
24 C -0.149 4.149
25 C -0.192 4.192
26 C -0.029 4.029
27 O -0.333 6.333
28 C -0.016 4.016
29 H 0.065 0.935
30 H 0.107 0.893
31 H 0.077 0.923
32 H 0.107 0.893
33 H 0.124 0.876
34 H 0.112 0.888
35 H 0.079 0.921
36 H 0.074 0.926
37 H 0.069 0.931
38 H 0.168 0.832
39 H 0.113 0.887
40 H 0.090 0.910
41 H 0.230 0.770
42 H 0.088 0.912
43 H 0.140 0.860
44 H 0.142 0.858
45 H 0.102 0.898
46 H 0.104 0.896
47 H 0.076 0.924
48 H 0.115 0.885
49 H 0.115 0.885
50 H 0.080 0.920
51 H 0.077 0.923
52 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -16.231 -13.066 26.166 33.449
hybrid contribution 0.662 -0.430 -1.192 1.430
sum -15.569 -13.496 24.975 32.377
Atomic orbital electron populations
1.22201 0.94977 1.03491 1.02088 1.21927 0.95130 0.80241 1.05229
1.48109 1.65414 1.15642 1.04924 1.21169 0.95163 0.98116 0.85639
1.22198 0.97695 0.96460 0.90785 1.59878 1.03093 1.62596 1.06182
1.21486 0.92198 0.98859 0.93859 1.20819 0.83004 0.85546 0.88201
1.90487 1.43687 1.48047 1.68695 1.41919 1.11490 1.46324 1.21151
1.19654 0.98184 1.29399 0.99382 0.90260 1.26077 0.94383 0.97931
1.02928 1.69664 1.03504 1.41554 1.41320 0.84960 0.77686 0.78337
0.77175 1.19884 1.19363 1.19478 1.21474 0.76251 0.86385 0.86803
1.90728 1.47039 1.20279 1.87859 1.21782 1.06132 0.99499 0.88857
1.21494 0.96652 0.98844 0.95340 0.92398 1.21659 1.02832 0.98663
0.91768 1.22186 0.96211 1.00580 1.00245 1.22829 0.95893 0.99020
0.85149 1.87950 1.85621 1.44436 1.15307 1.22789 0.94970 0.94958
0.88862 0.93491 0.89313 0.92342 0.89288 0.87579 0.88757 0.92069
0.92599 0.93133 0.83205 0.88682 0.91001 0.76957 0.91223 0.85990
0.85796 0.89794 0.89606 0.92355 0.88474 0.88489 0.92031 0.92302
0.90540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.16 10.24 71.98 0.74 -0.42 16
2 C 0.10 0.78 5.93 86.38 0.51 1.29 16
3 N -0.61 -10.35 2.47 -821.82 -2.03 -12.38 16
4 C 0.12 2.78 5.67 86.38 0.49 3.27 16
5 C 0.06 1.50 6.01 86.30 0.52 2.01 16
6 N -0.68 -22.96 6.13 -517.94 -3.17 -26.14 16
7 C 0.07 2.49 6.17 85.56 0.53 3.01 16
8 C 0.44 21.61 7.82 87.66 0.69 22.30 16
9 O -0.62 -35.66 15.78 -3.08 -0.05 -35.71 16
10 N -0.57 -30.24 5.29 -306.98 -1.62 -31.87 16
11 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16
12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16
13 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16
14 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16
15 Si 1.00 43.65 29.55 68.60 2.03 45.68 16
16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16
19 C 0.50 10.30 7.41 87.66 0.65 10.95 16
20 O -0.58 -18.29 13.57 -3.01 -0.04 -18.33 16
21 C -0.12 -1.37 3.73 29.85 0.11 -1.26 16
22 C -0.10 -1.63 2.03 -10.70 -0.02 -1.65 16
23 H 0.06 1.26 7.95 -2.39 -0.02 1.24 16
24 C -0.11 -1.01 5.31 30.71 0.16 -0.85 16
25 C -0.15 -1.67 6.14 30.69 0.19 -1.48 16
26 C 0.05 0.69 6.84 72.01 0.49 1.18 16
27 O -0.41 -9.93 10.77 -148.98 -1.60 -11.53 16
28 C 0.06 1.28 5.84 72.01 0.42 1.71 16
29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16
30 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16
31 H 0.06 0.40 7.22 -2.39 -0.02 0.38 16
32 H 0.09 0.64 8.07 -2.38 -0.02 0.62 16
33 H 0.11 0.33 6.44 -2.39 -0.02 0.31 16
34 H 0.09 1.75 8.07 -2.39 -0.02 1.73 16
35 H 0.06 1.83 7.42 -2.39 -0.02 1.81 16
36 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16
37 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16
38 H 0.35 11.55 8.43 -89.69 -0.76 10.79 16
39 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16
40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
41 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16
42 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16
43 H 0.12 0.70 7.40 -2.39 -0.02 0.69 16
44 H 0.12 0.73 7.19 -2.39 -0.02 0.72 16
45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16
46 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16
47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
48 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16
49 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16
50 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
52 H 0.08 2.17 6.04 -2.39 -0.01 2.16 16
Total: -1.00 -79.83 415.69 -0.02 -79.85
By element:
Atomic # 1 Polarization: 40.09 SS G_CDS: -0.57 Total: 39.52 kcal
Atomic # 6 Polarization: 14.27 SS G_CDS: 6.76 Total: 21.03 kcal
Atomic # 7 Polarization: -113.97 SS G_CDS: -6.54 Total: -120.51 kcal
Atomic # 8 Polarization: -63.87 SS G_CDS: -1.69 Total: -65.57 kcal
Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal
Total: -79.83 -0.02 -79.85 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001668646028.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.183 kcal
(2) G-P(sol) polarization free energy of solvation -79.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds