Wall clock time and date at job start Sat Apr 11 2020 06:27:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42903 * 113.99921 * 2 1
4 4 H 1.09000 * 109.57039 * 330.15598 * 3 2 1
5 5 C 1.53087 * 109.52323 * 90.31298 * 3 2 1
6 6 O 1.42904 * 109.41643 * 177.51249 * 5 3 2
7 7 C 1.42903 * 114.09748 * 298.84424 * 6 5 3
8 8 C 1.53088 * 109.41659 * 61.15578 * 7 6 5
9 9 C 1.53175 * 109.16582 * 302.39158 * 8 7 6
10 10 H 1.08999 * 109.62107 * 176.89201 * 9 8 7
11 11 N 1.46495 * 109.54374 * 297.11415 * 9 8 7
12 12 C 1.46504 * 120.00255 * 114.99595 * 11 9 8
13 13 C 1.34775 * 120.00096 * 295.00109 * 11 9 8
14 14 O 1.21587 * 119.99882 * 359.97438 * 13 11 9
15 15 N 1.34779 * 120.00330 * 179.97438 * 13 11 9
16 16 C 1.46506 * 120.00035 * 179.97438 * 15 13 11
17 17 C 1.53039 * 109.45658 * 205.00030 * 16 15 13
18 18 C 1.53201 * 109.30790 * 178.62973 * 17 16 15
19 19 N 1.46923 * 108.77470 * 54.63552 * 18 17 16
20 20 C 1.36932 * 120.63221 * 126.37035 * 19 18 17
21 21 H 1.08006 * 119.99824 * 330.89336 * 20 19 18
22 22 C 1.38810 * 120.00426 * 150.89126 * 20 19 18
23 23 N 1.31619 * 119.99887 * 338.51450 * 22 20 19
24 24 Si 1.86801 * 120.00378 * 158.51573 * 22 20 19
25 25 H 1.48498 * 109.47036 * 265.22472 * 24 22 20
26 26 H 1.48499 * 109.47280 * 145.22271 * 24 22 20
27 27 H 1.48501 * 109.46936 * 25.22263 * 24 22 20
28 28 C 1.46927 * 118.73836 * 306.63651 * 19 18 17
29 29 C 1.52768 * 109.00642 * 53.31908 * 28 19 18
30 30 H 1.09003 * 109.47376 * 60.00223 * 1 2 3
31 31 H 1.09007 * 109.47448 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47225 * 300.00233 * 1 2 3
33 33 H 1.08999 * 109.48300 * 297.50104 * 5 3 2
34 34 H 1.09006 * 109.47957 * 57.53247 * 5 3 2
35 35 H 1.09007 * 109.47911 * 181.13860 * 7 6 5
36 36 H 1.08998 * 109.48329 * 301.15926 * 7 6 5
37 37 H 1.09006 * 109.52615 * 182.48437 * 8 7 6
38 38 H 1.09002 * 109.52439 * 62.29429 * 8 7 6
39 39 H 1.08997 * 109.47169 * 264.47112 * 12 11 9
40 40 H 1.09001 * 109.46903 * 24.47150 * 12 11 9
41 41 H 1.09005 * 109.47255 * 144.47636 * 12 11 9
42 42 H 0.96995 * 119.99834 * 359.97438 * 15 13 11
43 43 H 1.08999 * 109.45957 * 324.97453 * 16 15 13
44 44 H 1.08995 * 109.50168 * 58.67823 * 17 16 15
45 45 H 1.09001 * 109.49933 * 298.57571 * 17 16 15
46 46 H 1.08994 * 109.58402 * 294.84612 * 18 17 16
47 47 H 1.08999 * 109.69797 * 174.49133 * 18 17 16
48 48 H 0.97001 * 120.00383 * 179.97438 * 23 22 20
49 49 H 1.09002 * 109.58509 * 173.14312 * 28 19 18
50 50 H 1.08991 * 109.59429 * 293.57508 * 28 19 18
51 51 H 1.08997 * 109.56580 * 185.55155 * 29 28 19
52 52 H 1.08998 * 109.38928 * 65.50723 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3448 2.0014 -0.5111
5 6 2.2254 1.7697 1.4428
6 8 2.8596 3.0503 1.4403
7 6 4.1470 3.0626 0.8203
8 6 4.0090 2.6503 -0.6476
9 6 3.3606 1.2646 -0.7219
10 1 3.2083 0.9872 -1.7650
11 7 4.2322 0.2804 -0.0754
12 6 3.7871 -0.4058 1.1400
13 6 5.4435 0.0064 -0.5988
14 8 5.8128 0.5756 -1.6077
15 7 6.2456 -0.8987 -0.0038
16 6 7.5622 -1.1970 -0.5730
17 6 7.9935 -2.6033 -0.1507
18 6 9.3548 -2.9248 -0.7756
19 7 10.3054 -1.8664 -0.4086
20 6 11.5008 -2.1766 0.1829
21 1 11.5857 -3.0603 0.7979
22 6 12.6035 -1.3553 -0.0081
23 7 12.6517 -0.5495 -1.0476
24 14 14.0190 -1.3939 1.2102
25 1 13.8329 -0.3204 2.2193
26 1 15.2990 -1.1786 0.4888
27 1 14.0503 -2.7132 1.8911
28 6 9.9464 -0.4683 -0.6828
29 6 8.5809 -0.1746 -0.0639
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 1.2628 1.8417 1.9490
34 1 2.8581 1.0518 1.9651
35 1 4.5687 4.0661 0.8779
36 1 4.8049 2.3619 1.3344
37 1 4.9951 2.6164 -1.1108
38 1 3.3840 3.3734 -1.1718
39 1 4.1762 0.1153 2.0147
40 1 2.6977 -0.4119 1.1755
41 1 4.1562 -1.4315 1.1341
42 1 5.9512 -1.3525 0.8013
43 1 7.5079 -1.1450 -1.6604
44 1 7.2555 -3.3285 -0.4934
45 1 8.0720 -2.6490 0.9356
46 1 9.2576 -2.9687 -1.8603
47 1 9.7134 -3.8838 -0.4017
48 1 13.4221 0.0247 -1.1809
49 1 10.6941 0.1935 -0.2454
50 1 9.8985 -0.3077 -1.7597
51 1 8.2610 0.8287 -0.3449
52 1 8.6534 -0.2428 1.0216
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000883349196.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:37
Heat of formation + Delta-G solvation = -62.589563 kcal
Electronic energy + Delta-G solvation = -32232.818329 eV
Core-core repulsion = 28041.716072 eV
Total energy + Delta-G solvation = -4191.102257 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.22935 -39.39236 -37.75049 -37.41924 -35.35460 -34.45933 -32.69229 -31.64095
-30.75140 -29.96802 -29.20171 -27.57308 -27.06587 -25.19940 -24.26836 -23.43316
-22.20221 -22.18730 -20.84867 -19.75655 -19.08512 -17.81891 -17.58217 -16.94061
-16.70422 -16.33921 -16.13327 -15.89121 -15.30072 -14.98621 -14.83449 -14.49695
-14.03219 -13.88278 -13.67400 -13.49650 -13.46336 -13.37415 -12.97856 -12.69476
-12.65254 -12.49681 -12.39053 -12.30009 -12.06200 -11.71265 -11.43654 -11.20492
-11.16386 -10.87947 -10.72909 -10.68601 -10.37259 -10.33268 -10.19769 -10.02762
-9.80989 -9.71242 -9.52797 -9.47315 -8.81244 -8.49677 -8.33189 -6.65784
-5.77742 -3.18871 2.65022 3.04149 3.39447 3.39998 3.46891 3.48213
3.67025 4.01584 4.27691 4.37752 4.51945 4.57455 4.73360 4.78185
4.83431 4.90043 4.99320 5.10425 5.21774 5.23286 5.31589 5.33393
5.36767 5.41015 5.49488 5.55819 5.63245 5.66557 5.68849 5.78850
5.88407 5.95520 6.12000 6.27989 6.32247 6.42171 6.49189 6.55317
6.66339 6.69405 6.81161 6.90203 6.94764 6.99494 7.11475 7.37478
7.64373 7.83588 8.12736 8.46968 8.80522 9.22334 9.86566 10.44886
11.30975
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.021457 B = 0.002535 C = 0.002426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1304.600606 B =11044.293123 C =11537.957479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.369 6.369
3 C 0.050 3.950
4 H 0.085 0.915
5 C 0.015 3.985
6 O -0.377 6.377
7 C 0.061 3.939
8 C -0.170 4.170
9 C 0.174 3.826
10 H 0.085 0.915
11 N -0.626 5.626
12 C 0.054 3.946
13 C 0.705 3.295
14 O -0.587 6.587
15 N -0.738 5.738
16 C 0.168 3.832
17 C -0.138 4.138
18 C 0.149 3.851
19 N -0.591 5.591
20 C -0.258 4.258
21 H 0.065 0.935
22 C 0.006 3.994
23 N -0.895 5.895
24 Si 0.898 3.102
25 H -0.288 1.288
26 H -0.292 1.292
27 H -0.278 1.278
28 C 0.176 3.824
29 C -0.145 4.145
30 H 0.045 0.955
31 H 0.089 0.911
32 H 0.043 0.957
33 H 0.092 0.908
34 H 0.085 0.915
35 H 0.097 0.903
36 H 0.054 0.946
37 H 0.103 0.897
38 H 0.079 0.921
39 H 0.049 0.951
40 H 0.113 0.887
41 H 0.061 0.939
42 H 0.390 0.610
43 H 0.081 0.919
44 H 0.054 0.946
45 H 0.062 0.938
46 H 0.020 0.980
47 H 0.058 0.942
48 H 0.254 0.746
49 H 0.079 0.921
50 H 0.021 0.979
51 H 0.053 0.947
52 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.455 3.134 5.082 27.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.288 6.288
3 C -0.009 4.009
4 H 0.103 0.897
5 C -0.061 4.061
6 O -0.296 6.296
7 C -0.015 4.015
8 C -0.209 4.209
9 C 0.070 3.930
10 H 0.103 0.897
11 N -0.364 5.364
12 C -0.088 4.088
13 C 0.407 3.593
14 O -0.465 6.465
15 N -0.392 5.392
16 C 0.064 3.936
17 C -0.178 4.178
18 C 0.022 3.978
19 N -0.314 5.314
20 C -0.388 4.388
21 H 0.083 0.917
22 C -0.194 4.194
23 N -0.538 5.538
24 Si 0.728 3.272
25 H -0.215 1.215
26 H -0.218 1.218
27 H -0.203 1.203
28 C 0.050 3.950
29 C -0.185 4.185
30 H 0.063 0.937
31 H 0.107 0.893
32 H 0.062 0.938
33 H 0.110 0.890
34 H 0.102 0.898
35 H 0.115 0.885
36 H 0.073 0.927
37 H 0.122 0.878
38 H 0.098 0.902
39 H 0.067 0.933
40 H 0.131 0.869
41 H 0.080 0.920
42 H 0.224 0.776
43 H 0.099 0.901
44 H 0.073 0.927
45 H 0.080 0.920
46 H 0.038 0.962
47 H 0.077 0.923
48 H 0.064 0.936
49 H 0.098 0.902
50 H 0.039 0.961
51 H 0.072 0.928
52 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -25.991 3.635 4.343 26.601
hybrid contribution 0.448 -0.181 0.894 1.016
sum -25.543 3.454 5.237 26.302
Atomic orbital electron populations
1.22906 0.81025 1.03132 1.00261 1.87982 1.19782 1.26604 1.94424
1.23025 0.94669 0.85691 0.97488 0.89680 1.23750 0.99443 0.87161
0.95785 1.87939 1.32644 1.29697 1.79319 1.22605 0.84429 1.02416
0.92087 1.22655 1.04477 0.95598 0.98123 1.20925 0.86607 0.88329
0.97159 0.89678 1.46924 1.16388 1.44143 1.28992 1.22532 1.03906
0.96262 0.86134 1.15886 0.79863 0.80509 0.83062 1.90899 1.74622
1.54852 1.26116 1.45645 1.18558 1.43983 1.31053 1.20890 0.79290
0.94952 0.98421 1.22339 0.99437 0.94687 1.01375 1.20833 0.87966
0.92862 0.96119 1.44075 1.16543 1.00151 1.70634 1.19138 0.86563
1.10616 1.22458 0.91728 1.25048 0.97003 1.00628 0.96674 1.70104
1.30268 1.27817 1.25638 0.86347 0.81861 0.77881 0.81140 1.21483
1.21824 1.20349 1.20580 0.91282 0.86418 0.96736 1.22476 0.97882
0.97607 1.00546 0.93671 0.89296 0.93812 0.88996 0.89759 0.88473
0.92743 0.87819 0.90221 0.93311 0.86899 0.92033 0.77568 0.90102
0.92690 0.91974 0.96195 0.92345 0.93620 0.90228 0.96053 0.92839
0.92866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 10.82 101.05 1.09 1.21 16
2 O -0.37 -2.97 7.59 -35.23 -0.27 -3.23 16
3 C 0.05 0.41 2.39 -26.59 -0.06 0.35 16
4 H 0.09 0.62 7.79 -51.93 -0.40 0.21 16
5 C 0.02 0.12 5.91 37.20 0.22 0.34 16
6 O -0.38 -3.87 10.77 -35.23 -0.38 -4.25 16
7 C 0.06 0.63 6.68 37.20 0.25 0.88 16
8 C -0.17 -1.85 5.54 -26.60 -0.15 -2.00 16
9 C 0.17 1.91 2.57 -67.75 -0.17 1.74 16
10 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16
11 N -0.63 -7.51 2.38 -179.45 -0.43 -7.93 16
12 C 0.05 0.49 7.71 59.85 0.46 0.95 16
13 C 0.71 11.07 7.96 -86.92 -0.69 10.38 16
14 O -0.59 -11.42 14.47 5.29 0.08 -11.34 16
15 N -0.74 -10.96 4.94 -58.63 -0.29 -11.25 16
16 C 0.17 3.01 2.42 -67.88 -0.16 2.85 16
17 C -0.14 -2.35 5.55 -26.61 -0.15 -2.49 16
18 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16
19 N -0.59 -14.90 2.99 -172.58 -0.52 -15.41 16
20 C -0.26 -7.11 9.53 -15.06 -0.14 -7.25 16
21 H 0.07 1.74 7.92 -52.48 -0.42 1.33 16
22 C 0.01 0.17 4.77 -17.43 -0.08 0.09 16
23 N -0.90 -26.45 11.60 55.49 0.64 -25.80 16
24 Si 0.90 21.77 29.61 -169.99 -5.03 16.74 16
25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
28 C 0.18 4.33 5.30 -3.93 -0.02 4.31 16
29 C -0.14 -2.93 5.64 -26.83 -0.15 -3.08 16
30 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16
31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.04 0.17 7.96 -51.93 -0.41 -0.24 16
33 H 0.09 0.59 7.96 -51.93 -0.41 0.18 16
34 H 0.08 0.68 3.76 -51.93 -0.20 0.48 16
35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16
37 H 0.10 1.42 6.49 -51.93 -0.34 1.08 16
38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
39 H 0.05 0.41 6.99 -51.93 -0.36 0.05 16
40 H 0.11 0.92 3.43 -52.17 -0.18 0.75 16
41 H 0.06 0.52 6.67 -51.93 -0.35 0.18 16
42 H 0.39 4.78 6.46 -40.82 -0.26 4.52 16
43 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16
44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
47 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16
48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
49 H 0.08 2.17 6.31 -51.93 -0.33 1.84 16
50 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
51 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16
52 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
LS Contribution 387.78 15.07 5.84 5.84
Total: -1.00 -32.85 387.78 -8.78 -41.63
By element:
Atomic # 1 Polarization: 12.30 SS G_CDS: -8.65 Total: 3.65 kcal
Atomic # 6 Polarization: 11.16 SS G_CDS: 0.21 Total: 11.37 kcal
Atomic # 7 Polarization: -59.81 SS G_CDS: -0.59 Total: -60.40 kcal
Atomic # 8 Polarization: -18.26 SS G_CDS: -0.57 Total: -18.83 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -32.85 -8.78 -41.63 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000883349196.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.961 kcal
(2) G-P(sol) polarization free energy of solvation -32.846 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds