Wall clock time and date at job start Sat Apr 11 2020 06:27:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42903 * 113.99921 * 2 1
4 4 H 1.09000 * 109.57039 * 330.15598 * 3 2 1
5 5 C 1.53087 * 109.52323 * 90.31298 * 3 2 1
6 6 O 1.42904 * 109.41643 * 177.51249 * 5 3 2
7 7 C 1.42903 * 114.09748 * 298.84424 * 6 5 3
8 8 C 1.53088 * 109.41659 * 61.15578 * 7 6 5
9 9 C 1.53175 * 109.16582 * 302.39158 * 8 7 6
10 10 H 1.08999 * 109.62107 * 176.89201 * 9 8 7
11 11 N 1.46495 * 109.54374 * 297.11415 * 9 8 7
12 12 C 1.46504 * 120.00255 * 114.99595 * 11 9 8
13 13 C 1.34775 * 120.00096 * 295.00109 * 11 9 8
14 14 O 1.21587 * 119.99882 * 359.97438 * 13 11 9
15 15 N 1.34779 * 120.00330 * 179.97438 * 13 11 9
16 16 C 1.46506 * 120.00035 * 179.97438 * 15 13 11
17 17 C 1.53039 * 109.45658 * 205.00030 * 16 15 13
18 18 C 1.53201 * 109.30790 * 178.62973 * 17 16 15
19 19 N 1.46923 * 108.77470 * 54.63552 * 18 17 16
20 20 C 1.36932 * 120.63221 * 126.37035 * 19 18 17
21 21 H 1.08006 * 119.99824 * 330.89336 * 20 19 18
22 22 C 1.38810 * 120.00426 * 150.89126 * 20 19 18
23 23 N 1.31619 * 119.99887 * 338.51450 * 22 20 19
24 24 Si 1.86801 * 120.00378 * 158.51573 * 22 20 19
25 25 H 1.48498 * 109.47036 * 265.22472 * 24 22 20
26 26 H 1.48499 * 109.47280 * 145.22271 * 24 22 20
27 27 H 1.48501 * 109.46936 * 25.22263 * 24 22 20
28 28 C 1.46927 * 118.73836 * 306.63651 * 19 18 17
29 29 C 1.52768 * 109.00642 * 53.31908 * 28 19 18
30 30 H 1.09003 * 109.47376 * 60.00223 * 1 2 3
31 31 H 1.09007 * 109.47448 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47225 * 300.00233 * 1 2 3
33 33 H 1.08999 * 109.48300 * 297.50104 * 5 3 2
34 34 H 1.09006 * 109.47957 * 57.53247 * 5 3 2
35 35 H 1.09007 * 109.47911 * 181.13860 * 7 6 5
36 36 H 1.08998 * 109.48329 * 301.15926 * 7 6 5
37 37 H 1.09006 * 109.52615 * 182.48437 * 8 7 6
38 38 H 1.09002 * 109.52439 * 62.29429 * 8 7 6
39 39 H 1.08997 * 109.47169 * 264.47112 * 12 11 9
40 40 H 1.09001 * 109.46903 * 24.47150 * 12 11 9
41 41 H 1.09005 * 109.47255 * 144.47636 * 12 11 9
42 42 H 0.96995 * 119.99834 * 359.97438 * 15 13 11
43 43 H 1.08999 * 109.45957 * 324.97453 * 16 15 13
44 44 H 1.08995 * 109.50168 * 58.67823 * 17 16 15
45 45 H 1.09001 * 109.49933 * 298.57571 * 17 16 15
46 46 H 1.08994 * 109.58402 * 294.84612 * 18 17 16
47 47 H 1.08999 * 109.69797 * 174.49133 * 18 17 16
48 48 H 0.97001 * 120.00383 * 179.97438 * 23 22 20
49 49 H 1.09002 * 109.58509 * 173.14312 * 28 19 18
50 50 H 1.08991 * 109.59429 * 293.57508 * 28 19 18
51 51 H 1.08997 * 109.56580 * 185.55155 * 29 28 19
52 52 H 1.08998 * 109.38928 * 65.50723 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3448 2.0014 -0.5111
5 6 2.2254 1.7697 1.4428
6 8 2.8596 3.0503 1.4403
7 6 4.1470 3.0626 0.8203
8 6 4.0090 2.6503 -0.6476
9 6 3.3606 1.2646 -0.7219
10 1 3.2083 0.9872 -1.7650
11 7 4.2322 0.2804 -0.0754
12 6 3.7871 -0.4058 1.1400
13 6 5.4435 0.0064 -0.5988
14 8 5.8128 0.5756 -1.6077
15 7 6.2456 -0.8987 -0.0038
16 6 7.5622 -1.1970 -0.5730
17 6 7.9935 -2.6033 -0.1507
18 6 9.3548 -2.9248 -0.7756
19 7 10.3054 -1.8664 -0.4086
20 6 11.5008 -2.1766 0.1829
21 1 11.5857 -3.0603 0.7979
22 6 12.6035 -1.3553 -0.0081
23 7 12.6517 -0.5495 -1.0476
24 14 14.0190 -1.3939 1.2102
25 1 13.8329 -0.3204 2.2193
26 1 15.2990 -1.1786 0.4888
27 1 14.0503 -2.7132 1.8911
28 6 9.9464 -0.4683 -0.6828
29 6 8.5809 -0.1746 -0.0639
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 1.2628 1.8417 1.9490
34 1 2.8581 1.0518 1.9651
35 1 4.5687 4.0661 0.8779
36 1 4.8049 2.3619 1.3344
37 1 4.9951 2.6164 -1.1108
38 1 3.3840 3.3734 -1.1718
39 1 4.1762 0.1153 2.0147
40 1 2.6977 -0.4119 1.1755
41 1 4.1562 -1.4315 1.1341
42 1 5.9512 -1.3525 0.8013
43 1 7.5079 -1.1450 -1.6604
44 1 7.2555 -3.3285 -0.4934
45 1 8.0720 -2.6490 0.9356
46 1 9.2576 -2.9687 -1.8603
47 1 9.7134 -3.8838 -0.4017
48 1 13.4221 0.0247 -1.1809
49 1 10.6941 0.1935 -0.2454
50 1 9.8985 -0.3077 -1.7597
51 1 8.2610 0.8287 -0.3449
52 1 8.6534 -0.2428 1.0216
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000883349196.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:36
Heat of formation + Delta-G solvation = -85.262025 kcal
Electronic energy + Delta-G solvation = -32233.801481 eV
Core-core repulsion = 28041.716072 eV
Total energy + Delta-G solvation = -4192.085408 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-42.13914 -40.52593 -39.01289 -38.37133 -36.40550 -36.02713 -34.14749 -32.99085
-31.79140 -31.52983 -30.76418 -28.38525 -27.51463 -26.95962 -25.34842 -24.16759
-23.91217 -23.73169 -21.95077 -21.22198 -20.43239 -19.02951 -18.57275 -18.23648
-17.67713 -17.31538 -17.07966 -16.77494 -16.71822 -16.19203 -15.88349 -15.71310
-15.39374 -15.35122 -14.94856 -14.78539 -14.68550 -14.43405 -14.20054 -14.09945
-13.99574 -13.41884 -13.30338 -13.14902 -13.08861 -13.03354 -12.89217 -12.62428
-12.59627 -12.30551 -12.13024 -12.02957 -11.96006 -11.87093 -11.53690 -11.53545
-11.32373 -11.07412 -10.80321 -10.57273 -10.20072 -10.10294 -9.49972 -8.72198
-7.89278 -5.33991 1.46977 1.48832 1.58331 1.59056 2.15773 2.42243
2.51546 2.94468 2.99961 3.25885 3.50385 3.66013 3.69100 3.86504
3.87871 3.94385 4.02873 4.08694 4.18941 4.33722 4.36886 4.44709
4.46622 4.50528 4.57110 4.66680 4.68576 4.71213 4.74485 4.77044
4.79719 4.85560 4.89444 4.92793 5.02605 5.04404 5.08131 5.11488
5.13554 5.30684 5.40360 5.52357 5.61270 5.63171 5.67664 5.89048
5.99854 6.25305 6.37802 6.99853 7.12219 7.60083 7.83296 8.37898
9.18161
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.021457 B = 0.002535 C = 0.002426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1304.600606 B =11044.293123 C =11537.957479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.383 6.383
3 C 0.062 3.938
4 H 0.098 0.902
5 C 0.013 3.987
6 O -0.384 6.384
7 C 0.067 3.933
8 C -0.165 4.165
9 C 0.167 3.833
10 H 0.066 0.934
11 N -0.616 5.616
12 C 0.048 3.952
13 C 0.700 3.300
14 O -0.631 6.631
15 N -0.726 5.726
16 C 0.181 3.819
17 C -0.120 4.120
18 C 0.143 3.857
19 N -0.608 5.608
20 C -0.265 4.265
21 H 0.073 0.927
22 C -0.051 4.051
23 N -0.935 5.935
24 Si 0.966 3.034
25 H -0.287 1.287
26 H -0.297 1.297
27 H -0.263 1.263
28 C 0.187 3.813
29 C -0.127 4.127
30 H 0.048 0.952
31 H 0.098 0.902
32 H 0.060 0.940
33 H 0.116 0.884
34 H 0.087 0.913
35 H 0.104 0.896
36 H 0.042 0.958
37 H 0.070 0.930
38 H 0.094 0.906
39 H 0.060 0.940
40 H 0.128 0.872
41 H 0.071 0.929
42 H 0.407 0.593
43 H 0.054 0.946
44 H 0.089 0.911
45 H 0.075 0.925
46 H 0.010 0.990
47 H 0.068 0.932
48 H 0.250 0.750
49 H 0.046 0.954
50 H -0.011 1.011
51 H 0.044 0.956
52 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.098 1.968 7.535 30.123
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.302 6.302
3 C 0.003 3.997
4 H 0.116 0.884
5 C -0.064 4.064
6 O -0.303 6.303
7 C -0.009 4.009
8 C -0.204 4.204
9 C 0.063 3.937
10 H 0.084 0.916
11 N -0.354 5.354
12 C -0.093 4.093
13 C 0.401 3.599
14 O -0.512 6.512
15 N -0.381 5.381
16 C 0.076 3.924
17 C -0.160 4.160
18 C 0.017 3.983
19 N -0.331 5.331
20 C -0.395 4.395
21 H 0.090 0.910
22 C -0.246 4.246
23 N -0.580 5.580
24 Si 0.794 3.206
25 H -0.214 1.214
26 H -0.224 1.224
27 H -0.187 1.187
28 C 0.060 3.940
29 C -0.167 4.167
30 H 0.067 0.933
31 H 0.117 0.883
32 H 0.078 0.922
33 H 0.134 0.866
34 H 0.104 0.896
35 H 0.122 0.878
36 H 0.060 0.940
37 H 0.089 0.911
38 H 0.113 0.887
39 H 0.079 0.921
40 H 0.145 0.855
41 H 0.090 0.910
42 H 0.245 0.755
43 H 0.072 0.928
44 H 0.107 0.893
45 H 0.094 0.906
46 H 0.028 0.972
47 H 0.087 0.913
48 H 0.058 0.942
49 H 0.065 0.935
50 H 0.007 0.993
51 H 0.063 0.937
52 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -28.713 2.427 6.852 29.618
hybrid contribution 1.164 0.150 0.070 1.176
sum -27.549 2.577 6.921 28.522
Atomic orbital electron populations
1.23098 0.79288 1.04171 1.01273 1.87933 1.21595 1.26219 1.94486
1.22864 0.93101 0.86330 0.97392 0.88389 1.23914 1.00431 0.86337
0.95681 1.87935 1.32252 1.30988 1.79130 1.22502 0.84653 1.02480
0.91308 1.22557 1.02960 0.96260 0.98622 1.21040 0.88106 0.87863
0.96723 0.91591 1.46934 1.15036 1.43921 1.29460 1.22785 1.04985
0.96577 0.84965 1.16088 0.80874 0.80238 0.82708 1.90879 1.75811
1.56319 1.28199 1.45257 1.17239 1.44107 1.31541 1.20490 0.80107
0.94917 0.96910 1.22128 0.97610 0.94429 1.01808 1.21030 0.89181
0.92161 0.95962 1.44326 1.16905 1.01063 1.70830 1.19527 0.87312
1.10548 1.22077 0.90970 1.25870 0.99793 1.00773 0.98208 1.70258
1.31030 1.29084 1.27628 0.85279 0.78314 0.78359 0.78686 1.21391
1.22425 1.18691 1.20292 0.92757 0.86193 0.94756 1.22209 0.96076
0.98028 1.00406 0.93284 0.88325 0.92180 0.86613 0.89556 0.87796
0.93959 0.91128 0.88730 0.92135 0.85493 0.91044 0.75535 0.92797
0.89264 0.90609 0.97182 0.91326 0.94154 0.93546 0.99295 0.93737
0.92122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 10.82 113.37 1.23 1.35 16
2 O -0.38 -5.08 7.59 -148.98 -1.13 -6.22 16
3 C 0.06 0.87 2.39 30.68 0.07 0.95 16
4 H 0.10 1.16 7.79 -2.39 -0.02 1.14 16
5 C 0.01 0.17 5.91 72.01 0.43 0.59 16
6 O -0.38 -7.03 10.77 -148.98 -1.60 -8.64 16
7 C 0.07 1.34 6.68 72.01 0.48 1.82 16
8 C -0.17 -3.60 5.54 30.68 0.17 -3.43 16
9 C 0.17 3.55 2.57 45.11 0.12 3.66 16
10 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
11 N -0.62 -14.10 2.38 -839.93 -2.00 -16.10 16
12 C 0.05 0.74 7.71 127.77 0.99 1.72 16
13 C 0.70 21.79 7.96 179.05 1.43 23.21 16
14 O -0.63 -25.43 14.47 -3.99 -0.06 -25.49 16
15 N -0.73 -20.53 4.94 -457.67 -2.26 -22.80 16
16 C 0.18 6.40 2.42 45.02 0.11 6.50 16
17 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16
18 C 0.14 5.85 6.52 86.37 0.56 6.41 16
19 N -0.61 -31.02 2.99 -699.92 -2.09 -33.11 16
20 C -0.26 -14.62 9.53 84.03 0.80 -13.81 16
21 H 0.07 3.82 7.92 -2.91 -0.02 3.79 16
22 C -0.05 -2.88 4.77 84.86 0.41 -2.47 16
23 N -0.93 -57.28 11.60 21.65 0.25 -57.03 16
24 Si 0.97 45.26 29.61 68.60 2.03 47.29 16
25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16
27 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16
28 C 0.19 9.58 5.30 86.22 0.46 10.04 16
29 C -0.13 -5.22 5.64 30.53 0.17 -5.05 16
30 H 0.05 0.32 8.09 -2.39 -0.02 0.30 16
31 H 0.10 0.52 8.14 -2.38 -0.02 0.51 16
32 H 0.06 0.25 7.96 -2.39 -0.02 0.23 16
33 H 0.12 1.02 7.96 -2.39 -0.02 1.00 16
34 H 0.09 1.11 3.76 -2.38 -0.01 1.10 16
35 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16
36 H 0.04 0.94 7.75 -2.39 -0.02 0.92 16
37 H 0.07 2.05 6.49 -2.38 -0.02 2.03 16
38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.06 0.83 6.99 -2.39 -0.02 0.82 16
40 H 0.13 1.67 3.43 -6.17 -0.02 1.65 16
41 H 0.07 0.98 6.67 -2.38 -0.02 0.96 16
42 H 0.41 8.79 6.46 -92.71 -0.60 8.19 16
43 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16
44 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16
45 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16
46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16
47 H 0.07 2.65 7.93 -2.39 -0.02 2.64 16
48 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
49 H 0.05 2.66 6.31 -2.39 -0.02 2.64 16
50 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16
51 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16
52 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
Total: -1.00 -74.20 387.78 1.03 -73.16
By element:
Atomic # 1 Polarization: 20.75 SS G_CDS: 0.31 Total: 21.06 kcal
Atomic # 6 Polarization: 20.27 SS G_CDS: 7.58 Total: 27.86 kcal
Atomic # 7 Polarization: -122.94 SS G_CDS: -6.10 Total: -129.03 kcal
Atomic # 8 Polarization: -37.55 SS G_CDS: -2.79 Total: -40.34 kcal
Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal
Total: -74.20 1.03 -73.16 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000883349196.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.100 kcal
(2) G-P(sol) polarization free energy of solvation -74.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds