Wall clock time and date at job start Sat Apr 11 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99472 * 2 1 4 4 C 1.34778 * 120.00053 * 179.97438 * 2 1 3 5 5 O 1.21271 * 119.99891 * 4.91181 * 4 2 1 6 6 C 1.50703 * 119.99475 * 184.90654 * 4 2 1 7 7 C 1.53000 * 109.46777 * 189.74839 * 6 4 2 8 8 C 1.53001 * 109.47229 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47330 * 59.99458 * 8 7 6 10 10 C 1.50708 * 109.46969 * 60.00208 * 9 8 7 11 11 O 1.21273 * 119.99740 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99734 * 179.72665 * 10 9 8 13 13 C 1.46497 * 119.99500 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46909 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47784 * 304.99896 * 14 13 12 16 16 O 1.42904 * 109.47230 * 65.00224 * 14 13 12 17 17 C 1.53001 * 109.47158 * 184.99630 * 14 13 12 18 18 N 1.46502 * 109.47146 * 179.97438 * 17 14 13 19 19 C 1.36934 * 120.00277 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00014 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00431 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99555 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47038 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46652 * 120.00273 * 23 21 19 26 26 H 1.48497 * 109.46758 * 240.00177 * 23 21 19 27 27 C 1.53000 * 109.47407 * 300.00433 * 9 8 7 28 28 C 1.52996 * 109.47352 * 69.74561 * 6 4 2 29 29 H 1.09005 * 109.46289 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47470 * 300.00842 * 1 2 3 31 31 H 1.09002 * 109.46630 * 60.00986 * 1 2 3 32 32 H 1.09007 * 109.46799 * 263.30662 * 3 2 1 33 33 H 1.09000 * 109.47677 * 23.30414 * 3 2 1 34 34 H 1.08995 * 109.47407 * 143.31217 * 3 2 1 35 35 H 1.09003 * 109.47005 * 309.74304 * 6 4 2 36 36 H 1.08997 * 109.47433 * 59.99500 * 7 6 4 37 37 H 1.09005 * 109.47254 * 299.99932 * 7 6 4 38 38 H 1.09003 * 109.46574 * 299.99478 * 8 7 6 39 39 H 1.09004 * 109.47210 * 180.02562 * 8 7 6 40 40 H 1.08994 * 109.47382 * 180.02562 * 9 8 7 41 41 H 0.97002 * 120.00070 * 359.97438 * 12 10 9 42 42 H 1.08996 * 109.47629 * 299.99608 * 13 12 10 43 43 H 1.09002 * 109.47666 * 59.99884 * 13 12 10 44 44 H 0.96703 * 114.00107 * 59.99261 * 16 14 13 45 45 H 1.08993 * 109.47682 * 300.00231 * 17 14 13 46 46 H 1.08998 * 109.47034 * 60.00739 * 17 14 13 47 47 H 0.96999 * 119.99829 * 0.02562 * 18 17 14 48 48 H 0.96996 * 119.99626 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.47337 * 179.97438 * 27 9 8 50 50 H 1.09003 * 109.46916 * 300.00236 * 27 9 8 51 51 H 1.08997 * 109.47145 * 300.00113 * 28 6 4 52 52 H 1.09005 * 109.46769 * 60.00012 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5360 -2.2155 -0.0889 6 6 3.6419 -1.1694 0.1122 7 6 4.1709 -2.5802 -0.1536 8 6 5.6966 -2.5827 -0.0396 9 6 6.1037 -2.1420 1.3678 10 6 5.5228 -3.0953 2.3803 11 8 4.8500 -4.0348 2.0123 12 7 5.7561 -2.9070 3.6943 13 6 5.1919 -3.8340 4.6785 14 6 5.6051 -3.3976 6.0855 15 1 6.6909 -3.3171 6.1369 16 8 5.0188 -2.1285 6.3820 17 6 5.1217 -4.4328 7.1031 18 7 5.5178 -4.0152 8.4503 19 6 5.1917 -4.7903 9.5311 20 1 4.6429 -5.7097 9.3903 21 6 5.5666 -4.3943 10.8077 22 7 6.2351 -3.2735 10.9793 23 14 5.1224 -5.4521 12.2818 24 1 4.3764 -6.6516 11.8236 25 1 6.3634 -5.8775 12.9777 26 1 4.2748 -4.6684 13.2159 27 6 5.5747 -0.7312 1.6335 28 6 4.0494 -0.7285 1.5194 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 2.4828 1.5235 -1.0207 33 1 1.5618 2.0554 0.4065 34 1 3.0928 1.1715 0.6139 35 1 4.0616 -0.4800 -0.6205 36 1 3.8805 -2.8943 -1.1561 37 1 3.7511 -3.2697 0.5790 38 1 6.1167 -1.8932 -0.7720 39 1 6.0735 -3.5877 -0.2294 40 1 7.1906 -2.1434 1.4488 41 1 6.2982 -2.1583 3.9883 42 1 4.1048 -3.8291 4.6008 43 1 5.5654 -4.8399 4.4862 44 1 4.0521 -2.1258 6.3546 45 1 4.0359 -4.5133 7.0519 46 1 5.5689 -5.4007 6.8771 47 1 6.0104 -3.1892 8.5768 48 1 6.4967 -2.9967 11.8714 49 1 5.8643 -0.4174 2.6364 50 1 5.9948 -0.0417 0.9012 51 1 3.6725 0.2766 1.7087 52 1 3.6297 -1.4179 2.2519 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497090139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:28:53 Heat of formation + Delta-G solvation = -119.643836 kcal Electronic energy + Delta-G solvation = -30849.720427 eV Core-core repulsion = 26656.144111 eV Total energy + Delta-G solvation = -4193.576316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10582 -39.86544 -37.92641 -36.86976 -35.87767 -34.44787 -34.00269 -32.04415 -31.32520 -30.97921 -29.04240 -28.32778 -26.71953 -25.54840 -23.81696 -23.01072 -22.57664 -21.48332 -21.34430 -19.59899 -19.39065 -17.35609 -17.17939 -16.94607 -16.60857 -16.38701 -16.13760 -15.95602 -15.64834 -15.04429 -14.57716 -14.44268 -14.31050 -14.25868 -13.90942 -13.59829 -13.37446 -13.11253 -13.00739 -12.97291 -12.88048 -12.67267 -12.48992 -12.46322 -12.27378 -12.22683 -12.11064 -11.85964 -11.46598 -11.03286 -10.96596 -10.85328 -10.84445 -10.61980 -10.42848 -10.14654 -9.87037 -9.85136 -9.71430 -9.40583 -9.03459 -9.01852 -8.91435 -6.94856 -5.77433 -3.06936 2.36333 2.62341 2.68763 3.13605 3.42708 3.48477 3.50695 4.09898 4.26830 4.33370 4.53618 4.57943 4.64647 4.70960 4.72110 4.79046 4.86079 4.87717 4.98875 5.04334 5.05595 5.12203 5.17730 5.19156 5.23413 5.26799 5.42771 5.50617 5.53349 5.54884 5.61207 5.66326 5.71124 5.81488 5.85157 5.94848 5.96310 6.01315 6.10970 6.19116 6.34704 6.50431 6.56976 6.67190 6.99810 7.49544 7.68279 7.91139 7.92503 8.24137 8.40915 9.52697 10.09201 10.45232 11.45004 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.002108 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.434829 B =13276.743390 C =13960.851803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.626 5.626 3 C 0.069 3.931 4 C 0.517 3.483 5 O -0.532 6.532 6 C -0.102 4.102 7 C -0.114 4.114 8 C -0.096 4.096 9 C -0.111 4.111 10 C 0.514 3.486 11 O -0.534 6.534 12 N -0.722 5.722 13 C 0.090 3.910 14 C 0.090 3.910 15 H 0.104 0.896 16 O -0.552 6.552 17 C 0.126 3.874 18 N -0.726 5.726 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.108 4.108 28 C -0.118 4.118 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.403 0.597 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.373 0.627 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 12.473 -27.413 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.361 5.361 3 C -0.074 4.074 4 C 0.305 3.695 5 O -0.408 6.408 6 C -0.124 4.124 7 C -0.152 4.152 8 C -0.134 4.134 9 C -0.132 4.132 10 C 0.300 3.700 11 O -0.411 6.411 12 N -0.374 5.374 13 C -0.035 4.035 14 C 0.030 3.970 15 H 0.121 0.879 16 O -0.357 6.357 17 C -0.003 4.003 18 N -0.371 5.371 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.146 4.146 28 C -0.155 4.155 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.238 0.762 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.220 0.780 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.289 11.256 -27.551 29.943 hybrid contribution -0.414 0.056 1.029 1.111 sum -3.703 11.312 -26.522 29.070 Atomic orbital electron populations 1.21686 0.79408 1.04251 1.01090 1.47748 1.07067 1.06495 1.74773 1.22032 0.97963 0.85325 1.02115 1.20833 0.90331 0.83013 0.75293 1.90704 1.70275 1.31181 1.48611 1.21354 0.91142 1.00763 0.99111 1.21636 0.94790 0.94913 1.03856 1.21329 0.96324 1.01952 0.93782 1.21404 1.01501 0.94941 0.95362 1.20582 0.80484 0.85892 0.83032 1.90662 1.38930 1.31798 1.79676 1.45973 1.54184 1.31335 1.05874 1.22086 0.99206 0.93802 0.88392 1.22376 0.98954 0.84897 0.90769 0.87870 1.86564 1.24895 1.31081 1.93171 1.21197 0.97337 0.95063 0.86665 1.42237 1.67803 1.27315 0.99709 1.19269 1.29642 1.02665 0.85764 0.91169 1.24765 1.01001 0.97665 0.97509 1.69690 1.43692 1.23008 1.21450 0.86107 0.77558 0.79425 0.83041 1.20539 1.21825 1.21817 1.21526 0.95080 0.95032 1.02945 1.21680 0.96364 1.02056 0.95402 0.89549 0.92232 0.92435 0.92565 0.90771 0.90074 0.89092 0.91868 0.87808 0.91474 0.90848 0.88315 0.76222 0.91206 0.90533 0.77989 0.95963 0.95390 0.77665 0.93539 0.90578 0.90419 0.90561 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.65 59.85 0.64 1.22 16 2 N -0.63 -5.22 3.27 -189.51 -0.62 -5.84 16 3 C 0.07 0.31 9.89 59.85 0.59 0.91 16 4 C 0.52 5.80 6.94 -10.98 -0.08 5.72 16 5 O -0.53 -8.30 15.32 5.57 0.09 -8.22 16 6 C -0.10 -0.88 1.71 -91.77 -0.16 -1.04 16 7 C -0.11 -1.23 4.26 -26.73 -0.11 -1.34 16 8 C -0.10 -0.81 5.09 -26.73 -0.14 -0.94 16 9 C -0.11 -0.88 3.01 -91.77 -0.28 -1.16 16 10 C 0.51 6.02 5.64 -10.98 -0.06 5.95 16 11 O -0.53 -8.37 13.66 5.56 0.08 -8.29 16 12 N -0.72 -7.95 5.40 -60.30 -0.33 -8.27 16 13 C 0.09 1.17 5.31 -4.04 -0.02 1.15 16 14 C 0.09 1.36 3.09 -26.73 -0.08 1.27 16 15 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 16 O -0.55 -8.54 13.03 -35.23 -0.46 -9.00 16 17 C 0.13 2.45 5.92 -4.04 -0.02 2.42 16 18 N -0.73 -18.35 5.49 -59.91 -0.33 -18.68 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.11 -0.66 5.36 -26.76 -0.14 -0.80 16 28 C -0.12 -0.91 4.68 -26.76 -0.13 -1.04 16 29 H 0.09 0.83 6.91 -51.93 -0.36 0.47 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 33 H 0.07 0.24 8.02 -51.93 -0.42 -0.18 16 34 H 0.08 0.31 4.36 -51.93 -0.23 0.09 16 35 H 0.09 0.56 7.68 -51.93 -0.40 0.16 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.53 5.36 -51.93 -0.28 1.25 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.40 3.76 7.91 -40.82 -0.32 3.44 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.37 4.93 9.05 45.56 0.41 5.35 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.39 10.49 7.54 -40.82 -0.31 10.18 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.08 0.44 7.58 -51.93 -0.39 0.04 16 50 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.08 0.46 5.44 -51.93 -0.28 0.18 16 52 H 0.07 0.77 7.22 -51.93 -0.37 0.40 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -36.74 406.14 -7.97 -44.71 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -7.99 Total: 12.71 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.23 Total: 4.87 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.55 Total: -60.40 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.30 Total: -25.51 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.74 -7.97 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497090139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.929 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds