Wall clock time and date at job start Sat Apr 11 2020 06:28:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.46498 * 119.99472 * 2 1
4 4 C 1.34778 * 120.00053 * 179.97438 * 2 1 3
5 5 O 1.21271 * 119.99891 * 4.91181 * 4 2 1
6 6 C 1.50703 * 119.99475 * 184.90654 * 4 2 1
7 7 C 1.53000 * 109.46777 * 189.74839 * 6 4 2
8 8 C 1.53001 * 109.47229 * 180.02562 * 7 6 4
9 9 C 1.52996 * 109.47330 * 59.99458 * 8 7 6
10 10 C 1.50708 * 109.46969 * 60.00208 * 9 8 7
11 11 O 1.21273 * 119.99740 * 0.02562 * 10 9 8
12 12 N 1.34777 * 119.99734 * 179.72665 * 10 9 8
13 13 C 1.46497 * 119.99500 * 180.02562 * 12 10 9
14 14 C 1.52999 * 109.46909 * 179.97438 * 13 12 10
15 15 H 1.09000 * 109.47784 * 304.99896 * 14 13 12
16 16 O 1.42904 * 109.47230 * 65.00224 * 14 13 12
17 17 C 1.53001 * 109.47158 * 184.99630 * 14 13 12
18 18 N 1.46502 * 109.47146 * 179.97438 * 17 14 13
19 19 C 1.36934 * 120.00277 * 179.97438 * 18 17 14
20 20 H 1.08003 * 120.00014 * 0.02562 * 19 18 17
21 21 C 1.38817 * 120.00431 * 180.02562 * 19 18 17
22 22 N 1.31623 * 119.99555 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00019 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47038 * 0.02562 * 23 21 19
25 25 H 1.48501 * 109.46652 * 120.00273 * 23 21 19
26 26 H 1.48497 * 109.46758 * 240.00177 * 23 21 19
27 27 C 1.53000 * 109.47407 * 300.00433 * 9 8 7
28 28 C 1.52996 * 109.47352 * 69.74561 * 6 4 2
29 29 H 1.09005 * 109.46289 * 180.02562 * 1 2 3
30 30 H 1.08994 * 109.47470 * 300.00842 * 1 2 3
31 31 H 1.09002 * 109.46630 * 60.00986 * 1 2 3
32 32 H 1.09007 * 109.46799 * 263.30662 * 3 2 1
33 33 H 1.09000 * 109.47677 * 23.30414 * 3 2 1
34 34 H 1.08995 * 109.47407 * 143.31217 * 3 2 1
35 35 H 1.09003 * 109.47005 * 309.74304 * 6 4 2
36 36 H 1.08997 * 109.47433 * 59.99500 * 7 6 4
37 37 H 1.09005 * 109.47254 * 299.99932 * 7 6 4
38 38 H 1.09003 * 109.46574 * 299.99478 * 8 7 6
39 39 H 1.09004 * 109.47210 * 180.02562 * 8 7 6
40 40 H 1.08994 * 109.47382 * 180.02562 * 9 8 7
41 41 H 0.97002 * 120.00070 * 359.97438 * 12 10 9
42 42 H 1.08996 * 109.47629 * 299.99608 * 13 12 10
43 43 H 1.09002 * 109.47666 * 59.99884 * 13 12 10
44 44 H 0.96703 * 114.00107 * 59.99261 * 16 14 13
45 45 H 1.08993 * 109.47682 * 300.00231 * 17 14 13
46 46 H 1.08998 * 109.47034 * 60.00739 * 17 14 13
47 47 H 0.96999 * 119.99829 * 0.02562 * 18 17 14
48 48 H 0.96996 * 119.99626 * 179.97438 * 22 21 19
49 49 H 1.09001 * 109.47337 * 179.97438 * 27 9 8
50 50 H 1.09003 * 109.46916 * 300.00236 * 27 9 8
51 51 H 1.08997 * 109.47145 * 300.00113 * 28 6 4
52 52 H 1.09005 * 109.46769 * 60.00012 * 28 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.1390 -1.1672 0.0005
5 8 1.5360 -2.2155 -0.0889
6 6 3.6419 -1.1694 0.1122
7 6 4.1709 -2.5802 -0.1536
8 6 5.6966 -2.5827 -0.0396
9 6 6.1037 -2.1420 1.3678
10 6 5.5228 -3.0953 2.3803
11 8 4.8500 -4.0348 2.0123
12 7 5.7561 -2.9070 3.6943
13 6 5.1919 -3.8340 4.6785
14 6 5.6051 -3.3976 6.0855
15 1 6.6909 -3.3171 6.1369
16 8 5.0188 -2.1285 6.3820
17 6 5.1217 -4.4328 7.1031
18 7 5.5178 -4.0152 8.4503
19 6 5.1917 -4.7903 9.5311
20 1 4.6429 -5.7097 9.3903
21 6 5.5666 -4.3943 10.8077
22 7 6.2351 -3.2735 10.9793
23 14 5.1224 -5.4521 12.2818
24 1 4.3764 -6.6516 11.8236
25 1 6.3634 -5.8775 12.9777
26 1 4.2748 -4.6684 13.2159
27 6 5.5747 -0.7312 1.6335
28 6 4.0494 -0.7285 1.5194
29 1 -0.3632 -1.0278 0.0005
30 1 -0.3634 0.5139 0.8898
31 1 -0.3633 0.5137 -0.8901
32 1 2.4828 1.5235 -1.0207
33 1 1.5618 2.0554 0.4065
34 1 3.0928 1.1715 0.6139
35 1 4.0616 -0.4800 -0.6205
36 1 3.8805 -2.8943 -1.1561
37 1 3.7511 -3.2697 0.5790
38 1 6.1167 -1.8932 -0.7720
39 1 6.0735 -3.5877 -0.2294
40 1 7.1906 -2.1434 1.4488
41 1 6.2982 -2.1583 3.9883
42 1 4.1048 -3.8291 4.6008
43 1 5.5654 -4.8399 4.4862
44 1 4.0521 -2.1258 6.3546
45 1 4.0359 -4.5133 7.0519
46 1 5.5689 -5.4007 6.8771
47 1 6.0104 -3.1892 8.5768
48 1 6.4967 -2.9967 11.8714
49 1 5.8643 -0.4174 2.6364
50 1 5.9948 -0.0417 0.9012
51 1 3.6725 0.2766 1.7087
52 1 3.6297 -1.4179 2.2519
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001497090139.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:52
Heat of formation + Delta-G solvation = -149.916032 kcal
Electronic energy + Delta-G solvation = -30851.033128 eV
Core-core repulsion = 26656.144111 eV
Total energy + Delta-G solvation = -4194.889017 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.89054 -40.74529 -39.13856 -37.76725 -36.62131 -36.08343 -35.32380 -33.24138
-32.69024 -31.73986 -30.43823 -28.87064 -27.50871 -26.96539 -24.98981 -23.96976
-23.61100 -22.77164 -22.30481 -20.45582 -20.14111 -19.23057 -18.13121 -17.89164
-17.48145 -17.32734 -17.20898 -16.71487 -16.51108 -16.46603 -16.09432 -15.52510
-15.33211 -15.02615 -14.93486 -14.91216 -14.58248 -14.22750 -14.05046 -13.91628
-13.65876 -13.46418 -13.45048 -13.28630 -13.12013 -13.08361 -12.95925 -12.89818
-12.79747 -12.65761 -12.14166 -12.09302 -11.96769 -11.83673 -11.79760 -11.55121
-11.08582 -11.05827 -10.98415 -10.66303 -10.46480 -10.02727 -9.67111 -9.02949
-7.96702 -5.26145 1.46738 1.47300 1.56192 1.57545 1.73561 2.07009
2.20657 2.55124 3.34185 3.43753 3.48091 3.60669 3.65702 3.68473
3.93253 4.01608 4.09825 4.14128 4.19552 4.24269 4.32867 4.40231
4.42726 4.45184 4.49207 4.53620 4.59668 4.61582 4.69739 4.74870
4.81661 4.87778 4.90591 4.94604 4.98013 5.08652 5.15465 5.19129
5.26987 5.29766 5.34046 5.42081 5.46863 5.51797 5.68097 6.24873
6.33420 6.61821 6.75836 7.14650 7.32112 7.35651 8.06579 8.31015
9.26595
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.016029 B = 0.002108 C = 0.002005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1746.434829 B =13276.743390 C =13960.851803
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.624 5.624
3 C 0.060 3.940
4 C 0.504 3.496
5 O -0.594 6.594
6 C -0.094 4.094
7 C -0.114 4.114
8 C -0.092 4.092
9 C -0.105 4.105
10 C 0.508 3.492
11 O -0.580 6.580
12 N -0.713 5.713
13 C 0.103 3.897
14 C 0.112 3.888
15 H 0.105 0.895
16 O -0.559 6.559
17 C 0.121 3.879
18 N -0.738 5.738
19 C -0.249 4.249
20 H 0.074 0.926
21 C -0.074 4.074
22 N -0.966 5.966
23 Si 0.974 3.026
24 H -0.268 1.268
25 H -0.291 1.291
26 H -0.292 1.292
27 C -0.102 4.102
28 C -0.114 4.114
29 H 0.055 0.945
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.074 0.926
33 H 0.091 0.909
34 H 0.093 0.907
35 H 0.129 0.871
36 H 0.048 0.952
37 H 0.056 0.944
38 H 0.105 0.895
39 H 0.055 0.945
40 H 0.129 0.871
41 H 0.414 0.586
42 H 0.061 0.939
43 H 0.070 0.930
44 H 0.383 0.617
45 H 0.026 0.974
46 H 0.031 0.969
47 H 0.378 0.622
48 H 0.252 0.748
49 H 0.086 0.914
50 H 0.116 0.884
51 H 0.099 0.901
52 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.787 15.002 -28.514 32.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.357 5.357
3 C -0.081 4.081
4 C 0.293 3.707
5 O -0.475 6.475
6 C -0.115 4.115
7 C -0.152 4.152
8 C -0.130 4.130
9 C -0.126 4.126
10 C 0.296 3.704
11 O -0.460 6.460
12 N -0.365 5.365
13 C -0.022 4.022
14 C 0.052 3.948
15 H 0.123 0.877
16 O -0.366 6.366
17 C -0.007 4.007
18 N -0.381 5.381
19 C -0.380 4.380
20 H 0.092 0.908
21 C -0.267 4.267
22 N -0.617 5.617
23 Si 0.803 3.197
24 H -0.192 1.192
25 H -0.218 1.218
26 H -0.219 1.219
27 C -0.140 4.140
28 C -0.152 4.152
29 H 0.074 0.926
30 H 0.094 0.906
31 H 0.097 0.903
32 H 0.092 0.908
33 H 0.110 0.890
34 H 0.111 0.889
35 H 0.147 0.853
36 H 0.067 0.933
37 H 0.075 0.925
38 H 0.123 0.877
39 H 0.074 0.926
40 H 0.147 0.853
41 H 0.251 0.749
42 H 0.079 0.921
43 H 0.088 0.912
44 H 0.231 0.769
45 H 0.043 0.957
46 H 0.049 0.951
47 H 0.211 0.789
48 H 0.061 0.939
49 H 0.104 0.896
50 H 0.135 0.865
51 H 0.118 0.882
52 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges -2.062 13.835 -28.680 31.909
hybrid contribution -0.895 -0.726 1.290 1.730
sum -2.956 13.109 -27.390 30.509
Atomic orbital electron populations
1.21761 0.79364 1.02819 1.02920 1.47936 1.07521 1.07154 1.73040
1.22331 0.98379 0.83645 1.03702 1.21442 0.91621 0.82964 0.74633
1.90674 1.71555 1.33510 1.51717 1.21353 0.89285 1.00049 1.00774
1.21514 0.96679 0.95500 1.01478 1.21337 0.94277 1.02145 0.95195
1.21509 1.02932 0.94881 0.93288 1.21433 0.79591 0.85883 0.83482
1.90666 1.40957 1.34053 1.80342 1.45861 1.53982 1.31181 1.05504
1.21749 0.98706 0.93977 0.87794 1.22062 0.98765 0.83586 0.90421
0.87721 1.86540 1.25908 1.30898 1.93209 1.21398 0.97455 0.96503
0.85302 1.42391 1.67761 1.26670 1.01310 1.19656 1.28697 1.02820
0.86871 0.90836 1.25588 1.01668 0.99125 1.00304 1.69835 1.45300
1.24765 1.21753 0.85067 0.77116 0.78099 0.79416 1.19239 1.21845
1.21888 1.21599 0.93341 0.94160 1.04851 1.21682 0.97890 1.02121
0.93476 0.92636 0.90607 0.90294 0.90768 0.89040 0.88910 0.85308
0.93274 0.92544 0.87693 0.92618 0.85340 0.74853 0.92110 0.91206
0.76872 0.95654 0.95108 0.78922 0.93912 0.89564 0.86527 0.88246
0.95039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.08 10.65 127.77 1.36 2.44 16
2 N -0.62 -9.65 3.27 -871.87 -2.85 -12.50 16
3 C 0.06 0.34 9.89 127.77 1.26 1.60 16
4 C 0.50 11.46 6.94 87.66 0.61 12.07 16
5 O -0.59 -20.19 15.32 -3.00 -0.05 -20.24 16
6 C -0.09 -1.48 1.71 -11.54 -0.02 -1.50 16
7 C -0.11 -2.50 4.26 30.59 0.13 -2.37 16
8 C -0.09 -1.38 5.09 30.59 0.16 -1.22 16
9 C -0.11 -1.39 3.01 -11.54 -0.03 -1.42 16
10 C 0.51 11.70 5.64 87.66 0.49 12.19 16
11 O -0.58 -19.17 13.66 -3.01 -0.04 -19.21 16
12 N -0.71 -15.07 5.40 -463.07 -2.50 -17.57 16
13 C 0.10 2.69 5.31 86.38 0.46 3.15 16
14 C 0.11 3.31 3.09 30.59 0.09 3.40 16
15 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16
16 O -0.56 -16.84 13.03 -148.98 -1.94 -18.79 16
17 C 0.12 4.69 5.92 86.38 0.51 5.20 16
18 N -0.74 -37.48 5.49 -343.45 -1.89 -39.37 16
19 C -0.25 -14.02 9.99 84.04 0.84 -13.18 16
20 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16
21 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16
22 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16
23 Si 0.97 46.43 29.55 68.60 2.03 48.46 16
24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16
26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
27 C -0.10 -0.82 5.36 30.58 0.16 -0.66 16
28 C -0.11 -1.52 4.68 30.58 0.14 -1.38 16
29 H 0.05 1.17 6.91 -2.38 -0.02 1.15 16
30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16
33 H 0.09 0.24 8.02 -2.39 -0.02 0.22 16
34 H 0.09 0.30 4.36 -2.39 -0.01 0.29 16
35 H 0.13 1.06 7.68 -2.39 -0.02 1.04 16
36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
37 H 0.06 1.82 5.36 -2.38 -0.01 1.80 16
38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
39 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16
40 H 0.13 1.02 8.14 -2.39 -0.02 1.01 16
41 H 0.41 6.86 7.91 -92.71 -0.73 6.13 16
42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
44 H 0.38 9.90 9.05 -74.05 -0.67 9.23 16
45 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16
46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
47 H 0.38 20.60 7.54 -92.71 -0.70 19.90 16
48 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16
49 H 0.09 0.60 7.58 -2.39 -0.02 0.58 16
50 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16
51 H 0.10 0.84 5.44 -2.39 -0.01 0.83 16
52 H 0.03 0.68 7.22 -2.38 -0.02 0.66 16
Total: -1.00 -85.22 406.14 -1.48 -86.69
By element:
Atomic # 1 Polarization: 38.29 SS G_CDS: -1.15 Total: 37.13 kcal
Atomic # 6 Polarization: 7.87 SS G_CDS: 6.64 Total: 14.50 kcal
Atomic # 7 Polarization: -121.59 SS G_CDS: -6.96 Total: -128.55 kcal
Atomic # 8 Polarization: -56.21 SS G_CDS: -2.03 Total: -58.24 kcal
Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal
Total: -85.22 -1.48 -86.69 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001497090139.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.223 kcal
(2) G-P(sol) polarization free energy of solvation -85.217 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds