Wall clock time and date at job start Sat Apr 11 2020 06:28:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42899 * 114.00051 * 2 1
4 4 C 1.52994 * 109.47271 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.47221 * 180.02562 * 4 3 2
6 6 C 1.50696 * 109.47054 * 180.02562 * 5 4 3
7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 4
9 9 C 1.46926 * 120.63336 * 180.02562 * 8 6 5
10 10 C 1.53191 * 108.89109 * 233.68039 * 9 8 6
11 11 C 1.53035 * 109.31327 * 305.29292 * 10 9 8
12 12 N 1.46907 * 109.45982 * 181.39007 * 11 10 9
13 13 C 1.46905 * 110.99745 * 298.94938 * 12 11 10
14 14 C 1.46899 * 110.99871 * 174.99942 * 12 11 10
15 15 C 1.50699 * 109.47187 * 189.99640 * 14 12 11
16 16 O 1.21294 * 119.99794 * 359.97438 * 15 14 12
17 17 N 1.34773 * 120.00369 * 179.97438 * 15 14 12
18 18 C 1.37094 * 120.00169 * 179.97438 * 17 15 14
19 19 H 1.07998 * 120.00107 * 0.02562 * 18 17 15
20 20 C 1.38950 * 120.00200 * 179.97438 * 18 17 15
21 21 N 1.31416 * 119.99942 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00098 * 179.97438 * 20 18 17
23 23 H 1.48494 * 109.47109 * 60.00469 * 22 20 18
24 24 H 1.48499 * 109.46892 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47318 * 300.00032 * 22 20 18
26 26 C 1.53038 * 109.54175 * 61.36680 * 11 10 9
27 27 C 1.47207 * 120.81118 * 0.14238 * 8 6 5
28 28 H 1.09001 * 109.47077 * 60.00731 * 1 2 3
29 29 H 1.09000 * 109.47105 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.47481 * 299.99946 * 1 2 3
31 31 H 1.09005 * 109.46859 * 59.99469 * 3 2 1
32 32 H 1.08996 * 109.47161 * 299.99981 * 3 2 1
33 33 H 1.09005 * 109.47197 * 60.00185 * 4 3 2
34 34 H 1.09001 * 109.47793 * 300.00030 * 4 3 2
35 35 H 1.08992 * 109.47110 * 60.00093 * 5 4 3
36 36 H 1.09000 * 109.46956 * 299.99698 * 5 4 3
37 37 H 1.09002 * 109.58861 * 113.82042 * 9 8 6
38 38 H 1.08996 * 109.58519 * 353.53933 * 9 8 6
39 39 H 1.09003 * 109.49975 * 65.24379 * 10 9 8
40 40 H 1.09000 * 109.49553 * 185.30642 * 10 9 8
41 41 H 1.09004 * 109.45942 * 301.34050 * 11 10 9
42 42 H 1.09000 * 109.46654 * 60.00417 * 13 12 11
43 43 H 1.08993 * 109.47225 * 180.02562 * 13 12 11
44 44 H 1.08994 * 109.46916 * 300.00191 * 13 12 11
45 45 H 1.08999 * 109.47176 * 309.99574 * 14 12 11
46 46 H 1.09003 * 109.47427 * 70.00208 * 14 12 11
47 47 H 0.97002 * 119.99675 * 0.02562 * 17 15 14
48 48 H 0.97001 * 119.99852 * 179.97438 * 21 20 18
49 49 H 1.09002 * 109.49557 * 58.58503 * 26 11 10
50 50 H 1.08996 * 109.50003 * 178.68400 * 26 11 10
51 51 H 1.08996 * 109.53610 * 6.53286 * 27 8 6
52 52 H 1.09002 * 109.68003 * 246.22753 * 27 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1577 2.5824 0.0013
6 6 5.6600 2.4634 0.0013
7 8 6.1816 1.3685 0.0013
8 7 6.4239 3.5738 0.0023
9 6 7.8898 3.4739 0.0018
10 6 8.4433 4.2954 1.1704
11 6 7.9138 5.7282 1.0775
12 7 8.4692 6.5275 2.1779
13 6 8.0658 5.9816 3.4807
14 6 8.0775 7.9378 2.0540
15 6 8.8554 8.7643 3.0453
16 8 9.6570 8.2307 3.7830
17 7 8.6606 10.0961 3.1124
18 6 9.3679 10.8479 4.0147
19 1 10.0816 10.3728 4.6714
20 6 9.1674 12.2211 4.0835
21 7 8.2993 12.7992 3.2840
22 14 10.1307 13.2452 5.3134
23 1 11.5840 13.1082 5.0410
24 1 9.7354 14.6711 5.1875
25 1 9.8381 12.7706 6.6897
26 6 6.3867 5.7170 1.1757
27 6 5.8098 4.9116 0.0066
28 1 -0.3633 0.5137 -0.8901
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8899
31 1 1.6885 1.8464 0.8900
32 1 1.6886 1.8463 -0.8899
33 1 3.8574 0.6436 -0.8892
34 1 3.8568 0.6439 0.8908
35 1 3.8357 3.1231 0.8912
36 1 3.8365 3.1236 -0.8887
37 1 8.2823 3.8640 -0.9373
38 1 8.1850 2.4310 0.1160
39 1 8.1234 3.8496 2.1122
40 1 9.5323 4.3057 1.1242
41 1 8.2133 6.1650 0.1248
42 1 8.4292 4.9582 3.5741
43 1 8.4900 6.5923 4.2777
44 1 6.9785 5.9895 3.5570
45 1 8.2907 8.2867 1.0436
46 1 7.0109 8.0378 2.2554
47 1 8.0193 10.5228 2.5228
48 1 8.1591 13.7579 3.3323
49 1 6.0861 5.2578 2.1175
50 1 6.0118 6.7395 1.1330
51 1 4.7305 4.8168 0.1254
52 1 6.0308 5.4200 -0.9319
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571328798.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:11
Heat of formation + Delta-G solvation = -113.060246 kcal
Electronic energy + Delta-G solvation = -29998.576460 eV
Core-core repulsion = 25805.285630 eV
Total energy + Delta-G solvation = -4193.290830 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.61937 -39.10159 -38.32531 -37.74090 -35.68102 -34.12516 -33.88373 -31.79634
-31.24469 -31.10297 -28.45372 -27.84156 -26.40517 -25.71687 -24.61422 -23.59899
-23.01099 -21.95913 -20.21214 -19.12895 -18.97114 -17.84410 -17.55191 -16.82476
-16.78164 -16.27103 -15.93813 -15.78021 -15.27946 -15.13799 -14.87428 -14.70069
-14.51323 -14.21277 -14.08302 -13.84431 -13.61408 -13.47919 -13.22199 -12.78723
-12.59073 -12.42120 -12.34829 -12.21432 -12.03500 -11.87764 -11.57996 -11.45684
-11.42667 -11.31646 -11.24538 -11.19293 -10.94431 -10.85238 -10.46403 -10.45276
-10.22308 -10.10061 -10.01600 -9.47810 -8.92813 -8.45425 -7.98574 -7.82161
-6.43134 -3.83846 2.37216 2.65079 3.18959 3.24725 3.29077 3.34771
3.88749 3.94449 4.16308 4.22495 4.45455 4.52867 4.65891 4.68288
4.76428 4.78915 4.86591 4.92493 4.97791 4.99792 5.02817 5.08396
5.09058 5.15438 5.22321 5.23907 5.25401 5.35224 5.44606 5.51374
5.63452 5.70698 5.71239 5.72917 5.82510 5.85696 5.88974 5.96205
6.05561 6.16017 6.27159 6.32419 6.56836 6.72667 7.11807 7.27167
7.38785 7.53788 7.91675 8.05088 8.60715 9.17010 9.53180 10.05354
10.74508
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.019814 B = 0.001775 C = 0.001686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1412.780107 B =15771.266110 C =16602.458976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.392 6.392
3 C 0.061 3.939
4 C -0.104 4.104
5 C -0.138 4.138
6 C 0.517 3.483
7 O -0.541 6.541
8 N -0.612 5.612
9 C 0.112 3.888
10 C -0.125 4.125
11 C 0.085 3.915
12 N -0.510 5.510
13 C 0.018 3.982
14 C 0.045 3.955
15 C 0.443 3.557
16 O -0.577 6.577
17 N -0.564 5.564
18 C -0.299 4.299
19 H 0.102 0.898
20 C 0.023 3.977
21 N -0.903 5.903
22 Si 0.930 3.070
23 H -0.273 1.273
24 H -0.285 1.285
25 H -0.274 1.274
26 C -0.174 4.174
27 C 0.112 3.888
28 H 0.041 0.959
29 H 0.086 0.914
30 H 0.041 0.959
31 H 0.050 0.950
32 H 0.050 0.950
33 H 0.079 0.921
34 H 0.079 0.921
35 H 0.095 0.905
36 H 0.095 0.905
37 H 0.068 0.932
38 H 0.093 0.907
39 H 0.069 0.931
40 H 0.086 0.914
41 H 0.083 0.917
42 H 0.061 0.939
43 H 0.094 0.906
44 H 0.016 0.984
45 H 0.087 0.913
46 H 0.048 0.952
47 H 0.391 0.609
48 H 0.272 0.728
49 H 0.073 0.927
50 H 0.080 0.920
51 H 0.084 0.916
52 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.644 -17.901 -10.463 25.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.311 6.311
3 C -0.016 4.016
4 C -0.142 4.142
5 C -0.178 4.178
6 C 0.305 3.695
7 O -0.418 6.418
8 N -0.346 5.346
9 C -0.010 4.010
10 C -0.164 4.164
11 C -0.024 4.024
12 N -0.232 5.232
13 C -0.130 4.130
14 C -0.086 4.086
15 C 0.229 3.771
16 O -0.461 6.461
17 N -0.201 5.201
18 C -0.429 4.429
19 H 0.120 0.880
20 C -0.179 4.179
21 N -0.544 5.544
22 Si 0.757 3.243
23 H -0.199 1.199
24 H -0.210 1.210
25 H -0.200 1.200
26 C -0.214 4.214
27 C -0.011 4.011
28 H 0.060 0.940
29 H 0.104 0.896
30 H 0.060 0.940
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.097 0.903
34 H 0.098 0.902
35 H 0.114 0.886
36 H 0.113 0.887
37 H 0.087 0.913
38 H 0.112 0.888
39 H 0.087 0.913
40 H 0.105 0.895
41 H 0.101 0.899
42 H 0.080 0.920
43 H 0.113 0.887
44 H 0.035 0.965
45 H 0.105 0.895
46 H 0.066 0.934
47 H 0.225 0.775
48 H 0.081 0.919
49 H 0.091 0.909
50 H 0.098 0.902
51 H 0.102 0.898
52 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -13.232 -18.811 -9.996 25.077
hybrid contribution -1.169 1.452 0.262 1.883
sum -14.401 -17.359 -9.733 24.565
Atomic orbital electron populations
1.22752 0.80906 1.02867 1.00009 1.87889 1.19777 1.27965 1.95419
1.22551 0.94039 0.84775 1.00226 1.21227 0.92176 0.95791 1.05020
1.21579 0.92276 0.99384 1.04528 1.20549 0.89427 0.83779 0.75744
1.90709 1.74977 1.26264 1.49889 1.48246 1.07082 1.06039 1.73275
1.21633 0.78693 1.02157 0.98558 1.21976 1.01823 0.94053 0.98517
1.21769 0.90823 0.94036 0.95789 1.61829 1.58445 1.00722 1.02192
1.22593 0.97126 1.00832 0.92445 1.21867 0.97513 0.88879 1.00346
1.19756 0.87048 0.82992 0.87346 1.90489 1.38674 1.71318 1.45654
1.41855 1.38019 1.05379 1.34857 1.19649 1.19726 0.89106 1.14411
0.87985 1.25248 0.97339 0.97073 0.98223 1.69603 1.34666 1.11763
1.38363 0.85923 0.79758 0.78172 0.80401 1.19885 1.20998 1.19953
1.22702 0.98722 1.00899 0.99084 1.21771 0.97849 0.82383 0.99136
0.94049 0.89563 0.93998 0.93179 0.93219 0.90265 0.90239 0.88633
0.88686 0.91326 0.88835 0.91268 0.89516 0.89907 0.92050 0.88726
0.96538 0.89518 0.93434 0.77545 0.91854 0.90865 0.90168 0.89814
0.90878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 11.01 101.05 1.11 1.29 16
2 O -0.39 -3.55 10.70 -35.23 -0.38 -3.93 16
3 C 0.06 0.42 5.94 37.15 0.22 0.64 16
4 C -0.10 -0.86 4.87 -26.73 -0.13 -0.99 16
5 C -0.14 -0.94 4.06 -27.88 -0.11 -1.06 16
6 C 0.52 5.37 7.70 -10.99 -0.08 5.29 16
7 O -0.54 -7.71 15.39 5.55 0.09 -7.62 16
8 N -0.61 -5.68 2.98 -172.52 -0.51 -6.20 16
9 C 0.11 1.10 6.42 -3.71 -0.02 1.07 16
10 C -0.13 -1.35 5.11 -26.61 -0.14 -1.49 16
11 C 0.09 0.97 2.19 -67.67 -0.15 0.82 16
12 N -0.51 -7.95 4.49 -236.28 -1.06 -9.01 16
13 C 0.02 0.28 8.46 60.07 0.51 0.79 16
14 C 0.05 0.76 4.89 -4.98 -0.02 0.74 16
15 C 0.44 10.17 7.47 -10.99 -0.08 10.09 16
16 O -0.58 -15.26 13.91 5.55 0.08 -15.18 16
17 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16
18 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16
19 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16
20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
21 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16
22 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16
23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
26 C -0.17 -1.62 4.66 -26.59 -0.12 -1.75 16
27 C 0.11 0.81 6.36 -3.53 -0.02 0.78 16
28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16
29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16
31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16
33 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16
34 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16
35 H 0.10 0.52 7.69 -51.93 -0.40 0.12 16
36 H 0.09 0.46 7.96 -51.93 -0.41 0.04 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
38 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16
39 H 0.07 0.81 6.50 -51.93 -0.34 0.48 16
40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
41 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16
42 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16
43 H 0.09 1.84 5.82 -51.93 -0.30 1.54 16
44 H 0.02 0.23 6.31 -51.93 -0.33 -0.10 16
45 H 0.09 1.32 8.00 -51.93 -0.42 0.90 16
46 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16
47 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16
48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16
49 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16
50 H 0.08 0.74 6.69 -51.93 -0.35 0.39 16
51 H 0.08 0.43 5.97 -51.93 -0.31 0.12 16
52 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
LS Contribution 405.40 15.07 6.11 6.11
Total: -1.00 -33.55 405.40 -8.04 -41.59
By element:
Atomic # 1 Polarization: 16.22 SS G_CDS: -8.71 Total: 7.51 kcal
Atomic # 6 Polarization: 7.66 SS G_CDS: 0.71 Total: 8.37 kcal
Atomic # 7 Polarization: -51.74 SS G_CDS: -0.91 Total: -52.65 kcal
Atomic # 8 Polarization: -26.51 SS G_CDS: -0.21 Total: -26.73 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -33.55 -8.04 -41.59 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571328798.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.474 kcal
(2) G-P(sol) polarization free energy of solvation -33.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.020 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.060 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds