Wall clock time and date at job start Sat Apr 11 2020 06:28:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42899 * 114.00051 * 2 1
4 4 C 1.52994 * 109.47271 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.47221 * 180.02562 * 4 3 2
6 6 C 1.50696 * 109.47054 * 180.02562 * 5 4 3
7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 4
9 9 C 1.46926 * 120.63336 * 180.02562 * 8 6 5
10 10 C 1.53191 * 108.89109 * 233.68039 * 9 8 6
11 11 C 1.53035 * 109.31327 * 305.29292 * 10 9 8
12 12 N 1.46907 * 109.45982 * 181.39007 * 11 10 9
13 13 C 1.46905 * 110.99745 * 298.94938 * 12 11 10
14 14 C 1.46899 * 110.99871 * 174.99942 * 12 11 10
15 15 C 1.50699 * 109.47187 * 189.99640 * 14 12 11
16 16 O 1.21294 * 119.99794 * 359.97438 * 15 14 12
17 17 N 1.34773 * 120.00369 * 179.97438 * 15 14 12
18 18 C 1.37094 * 120.00169 * 179.97438 * 17 15 14
19 19 H 1.07998 * 120.00107 * 0.02562 * 18 17 15
20 20 C 1.38950 * 120.00200 * 179.97438 * 18 17 15
21 21 N 1.31416 * 119.99942 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00098 * 179.97438 * 20 18 17
23 23 H 1.48494 * 109.47109 * 60.00469 * 22 20 18
24 24 H 1.48499 * 109.46892 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47318 * 300.00032 * 22 20 18
26 26 C 1.53038 * 109.54175 * 61.36680 * 11 10 9
27 27 C 1.47207 * 120.81118 * 0.14238 * 8 6 5
28 28 H 1.09001 * 109.47077 * 60.00731 * 1 2 3
29 29 H 1.09000 * 109.47105 * 179.97438 * 1 2 3
30 30 H 1.08995 * 109.47481 * 299.99946 * 1 2 3
31 31 H 1.09005 * 109.46859 * 59.99469 * 3 2 1
32 32 H 1.08996 * 109.47161 * 299.99981 * 3 2 1
33 33 H 1.09005 * 109.47197 * 60.00185 * 4 3 2
34 34 H 1.09001 * 109.47793 * 300.00030 * 4 3 2
35 35 H 1.08992 * 109.47110 * 60.00093 * 5 4 3
36 36 H 1.09000 * 109.46956 * 299.99698 * 5 4 3
37 37 H 1.09002 * 109.58861 * 113.82042 * 9 8 6
38 38 H 1.08996 * 109.58519 * 353.53933 * 9 8 6
39 39 H 1.09003 * 109.49975 * 65.24379 * 10 9 8
40 40 H 1.09000 * 109.49553 * 185.30642 * 10 9 8
41 41 H 1.09004 * 109.45942 * 301.34050 * 11 10 9
42 42 H 1.09000 * 109.46654 * 60.00417 * 13 12 11
43 43 H 1.08993 * 109.47225 * 180.02562 * 13 12 11
44 44 H 1.08994 * 109.46916 * 300.00191 * 13 12 11
45 45 H 1.08999 * 109.47176 * 309.99574 * 14 12 11
46 46 H 1.09003 * 109.47427 * 70.00208 * 14 12 11
47 47 H 0.97002 * 119.99675 * 0.02562 * 17 15 14
48 48 H 0.97001 * 119.99852 * 179.97438 * 21 20 18
49 49 H 1.09002 * 109.49557 * 58.58503 * 26 11 10
50 50 H 1.08996 * 109.50003 * 178.68400 * 26 11 10
51 51 H 1.08996 * 109.53610 * 6.53286 * 27 8 6
52 52 H 1.09002 * 109.68003 * 246.22753 * 27 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1577 2.5824 0.0013
6 6 5.6600 2.4634 0.0013
7 8 6.1816 1.3685 0.0013
8 7 6.4239 3.5738 0.0023
9 6 7.8898 3.4739 0.0018
10 6 8.4433 4.2954 1.1704
11 6 7.9138 5.7282 1.0775
12 7 8.4692 6.5275 2.1779
13 6 8.0658 5.9816 3.4807
14 6 8.0775 7.9378 2.0540
15 6 8.8554 8.7643 3.0453
16 8 9.6570 8.2307 3.7830
17 7 8.6606 10.0961 3.1124
18 6 9.3679 10.8479 4.0147
19 1 10.0816 10.3728 4.6714
20 6 9.1674 12.2211 4.0835
21 7 8.2993 12.7992 3.2840
22 14 10.1307 13.2452 5.3134
23 1 11.5840 13.1082 5.0410
24 1 9.7354 14.6711 5.1875
25 1 9.8381 12.7706 6.6897
26 6 6.3867 5.7170 1.1757
27 6 5.8098 4.9116 0.0066
28 1 -0.3633 0.5137 -0.8901
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8899
31 1 1.6885 1.8464 0.8900
32 1 1.6886 1.8463 -0.8899
33 1 3.8574 0.6436 -0.8892
34 1 3.8568 0.6439 0.8908
35 1 3.8357 3.1231 0.8912
36 1 3.8365 3.1236 -0.8887
37 1 8.2823 3.8640 -0.9373
38 1 8.1850 2.4310 0.1160
39 1 8.1234 3.8496 2.1122
40 1 9.5323 4.3057 1.1242
41 1 8.2133 6.1650 0.1248
42 1 8.4292 4.9582 3.5741
43 1 8.4900 6.5923 4.2777
44 1 6.9785 5.9895 3.5570
45 1 8.2907 8.2867 1.0436
46 1 7.0109 8.0378 2.2554
47 1 8.0193 10.5228 2.5228
48 1 8.1591 13.7579 3.3323
49 1 6.0861 5.2578 2.1175
50 1 6.0118 6.7395 1.1330
51 1 4.7305 4.8168 0.1254
52 1 6.0308 5.4200 -0.9319
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001571328798.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:10
Heat of formation + Delta-G solvation = -138.104651 kcal
Electronic energy + Delta-G solvation = -29999.662467 eV
Core-core repulsion = 25805.285630 eV
Total energy + Delta-G solvation = -4194.376837 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.44521 -40.42528 -39.23250 -38.78847 -36.77908 -35.81201 -34.75163 -33.26520
-32.65811 -31.91828 -29.47712 -28.80362 -27.29057 -26.78104 -26.01420 -24.33153
-24.03120 -22.68780 -21.19115 -20.78054 -19.82636 -19.73065 -18.33510 -17.81802
-17.37335 -17.33994 -16.71626 -16.60694 -16.51136 -16.38514 -16.14305 -15.78156
-15.67727 -15.21980 -15.15333 -15.03846 -14.87118 -14.43165 -14.18014 -13.90447
-13.66020 -13.46178 -13.29636 -13.07594 -12.97697 -12.85785 -12.78994 -12.67403
-12.56865 -12.41603 -12.31380 -12.11880 -12.08602 -11.96712 -11.88916 -11.76266
-11.46765 -11.35009 -10.83227 -10.60160 -10.24333 -9.96884 -9.69167 -9.06833
-8.44198 -5.92241 1.40718 1.42754 1.53026 1.61867 1.97006 2.09763
2.30083 2.79327 2.86020 3.23035 3.45143 3.52487 3.76223 3.90789
3.98176 4.05133 4.08219 4.16405 4.25761 4.30039 4.35407 4.37378
4.45812 4.47866 4.52109 4.53417 4.56554 4.58002 4.59193 4.63739
4.68108 4.75729 4.82191 4.84014 4.87459 4.91895 5.03172 5.10481
5.11736 5.22017 5.25177 5.34537 5.43426 5.56531 5.93431 6.11516
6.26174 6.27871 6.41681 6.64565 7.16477 7.16784 7.60689 8.17457
8.72763
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.019814 B = 0.001775 C = 0.001686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1412.780107 B =15771.266110 C =16602.458976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.425 6.425
3 C 0.061 3.939
4 C -0.101 4.101
5 C -0.128 4.128
6 C 0.509 3.491
7 O -0.590 6.590
8 N -0.611 5.611
9 C 0.117 3.883
10 C -0.117 4.117
11 C 0.086 3.914
12 N -0.531 5.531
13 C 0.027 3.973
14 C 0.060 3.940
15 C 0.439 3.561
16 O -0.617 6.617
17 N -0.574 5.574
18 C -0.333 4.333
19 H 0.077 0.923
20 C -0.011 4.011
21 N -0.919 5.919
22 Si 0.990 3.010
23 H -0.274 1.274
24 H -0.270 1.270
25 H -0.273 1.273
26 C -0.169 4.169
27 C 0.113 3.887
28 H 0.053 0.947
29 H 0.091 0.909
30 H 0.051 0.949
31 H 0.064 0.936
32 H 0.069 0.931
33 H 0.058 0.942
34 H 0.053 0.947
35 H 0.118 0.882
36 H 0.127 0.873
37 H 0.085 0.915
38 H 0.075 0.925
39 H 0.055 0.945
40 H 0.077 0.923
41 H 0.095 0.905
42 H 0.069 0.931
43 H 0.051 0.949
44 H 0.035 0.965
45 H 0.110 0.890
46 H 0.072 0.928
47 H 0.396 0.604
48 H 0.277 0.723
49 H 0.063 0.937
50 H 0.089 0.911
51 H 0.113 0.887
52 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.788 -16.857 -11.882 26.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.345 6.345
3 C -0.015 4.015
4 C -0.139 4.139
5 C -0.168 4.168
6 C 0.299 3.701
7 O -0.471 6.471
8 N -0.344 5.344
9 C -0.007 4.007
10 C -0.156 4.156
11 C -0.022 4.022
12 N -0.254 5.254
13 C -0.121 4.121
14 C -0.071 4.071
15 C 0.227 3.773
16 O -0.504 6.504
17 N -0.212 5.212
18 C -0.463 4.463
19 H 0.095 0.905
20 C -0.211 4.211
21 N -0.560 5.560
22 Si 0.814 3.186
23 H -0.199 1.199
24 H -0.195 1.195
25 H -0.199 1.199
26 C -0.208 4.208
27 C -0.009 4.009
28 H 0.072 0.928
29 H 0.109 0.891
30 H 0.069 0.931
31 H 0.082 0.918
32 H 0.087 0.913
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.136 0.864
36 H 0.145 0.855
37 H 0.103 0.897
38 H 0.094 0.906
39 H 0.074 0.926
40 H 0.096 0.904
41 H 0.113 0.887
42 H 0.087 0.913
43 H 0.070 0.930
44 H 0.053 0.947
45 H 0.128 0.872
46 H 0.090 0.910
47 H 0.230 0.770
48 H 0.086 0.914
49 H 0.082 0.918
50 H 0.108 0.892
51 H 0.131 0.869
52 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -15.408 -17.746 -11.440 26.138
hybrid contribution -0.475 1.047 0.698 1.345
sum -15.883 -16.699 -10.742 25.427
Atomic orbital electron populations
1.22914 0.79380 1.03679 1.01053 1.87845 1.21611 1.29399 1.95676
1.22612 0.92710 0.84359 1.01809 1.21154 0.93561 0.96401 1.02807
1.21597 0.89262 0.98900 1.07013 1.21227 0.90959 0.83189 0.74693
1.90693 1.76077 1.28177 1.52175 1.48350 1.06710 1.06868 1.72432
1.21517 0.79539 1.00913 0.98687 1.21873 1.01336 0.94007 0.98377
1.21846 0.92553 0.93279 0.94495 1.61743 1.59979 1.00552 1.03150
1.22398 0.97932 1.00233 0.91552 1.21720 0.97537 0.88630 0.99187
1.20903 0.86385 0.82701 0.87344 1.90472 1.40460 1.72021 1.47403
1.41912 1.38278 1.06107 1.34879 1.19595 1.20784 0.90172 1.15727
0.90544 1.25964 0.97991 0.97463 0.99649 1.69657 1.35092 1.12254
1.38996 0.85038 0.78309 0.77149 0.78137 1.19906 1.19473 1.19875
1.22634 0.96672 1.01823 0.99712 1.21972 0.99262 0.80709 0.98972
0.92810 0.89052 0.93058 0.91752 0.91260 0.92273 0.92805 0.86358
0.85541 0.89724 0.90648 0.92610 0.90417 0.88700 0.91259 0.93029
0.94707 0.87158 0.90987 0.76971 0.91358 0.91787 0.89223 0.86854
0.88934
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 11.01 113.37 1.25 1.50 16
2 O -0.43 -7.31 10.70 -148.98 -1.59 -8.90 16
3 C 0.06 0.73 5.94 71.98 0.43 1.16 16
4 C -0.10 -1.57 4.87 30.59 0.15 -1.42 16
5 C -0.13 -1.38 4.06 29.85 0.12 -1.26 16
6 C 0.51 9.80 7.70 87.66 0.68 10.48 16
7 O -0.59 -17.06 15.39 -3.05 -0.05 -17.10 16
8 N -0.61 -9.83 2.98 -818.10 -2.44 -12.27 16
9 C 0.12 2.13 6.42 86.36 0.55 2.69 16
10 C -0.12 -2.41 5.11 30.67 0.16 -2.26 16
11 C 0.09 1.77 2.19 44.94 0.10 1.86 16
12 N -0.53 -15.90 4.49 -901.46 -4.05 -19.95 16
13 C 0.03 0.83 8.46 127.69 1.08 1.91 16
14 C 0.06 1.92 4.89 85.56 0.42 2.33 16
15 C 0.44 20.29 7.47 87.66 0.66 20.94 16
16 O -0.62 -33.68 13.91 -3.07 -0.04 -33.72 16
17 N -0.57 -28.69 5.29 -306.99 -1.62 -30.31 16
18 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16
19 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16
20 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16
21 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16
22 Si 0.99 42.50 29.55 68.60 2.03 44.53 16
23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16
25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
26 C -0.17 -2.53 4.66 30.69 0.14 -2.39 16
27 C 0.11 1.13 6.36 86.32 0.55 1.68 16
28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16
29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
30 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16
31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16
32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
33 H 0.06 1.14 8.10 -2.38 -0.02 1.12 16
34 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16
35 H 0.12 0.79 7.69 -2.39 -0.02 0.77 16
36 H 0.13 0.62 7.96 -2.39 -0.02 0.60 16
37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.08 1.69 7.00 -2.39 -0.02 1.67 16
39 H 0.06 1.29 6.50 -2.39 -0.02 1.28 16
40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
41 H 0.09 1.76 8.03 -2.39 -0.02 1.74 16
42 H 0.07 1.99 6.36 -2.39 -0.02 1.98 16
43 H 0.05 2.07 5.82 -2.39 -0.01 2.05 16
44 H 0.03 0.93 6.31 -2.39 -0.02 0.92 16
45 H 0.11 3.03 8.00 -2.39 -0.02 3.01 16
46 H 0.07 1.97 6.90 -2.39 -0.02 1.95 16
47 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16
48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16
49 H 0.06 1.11 6.47 -2.39 -0.02 1.10 16
50 H 0.09 1.24 6.69 -2.39 -0.02 1.22 16
51 H 0.11 0.53 5.97 -2.39 -0.01 0.51 16
52 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
Total: -1.00 -76.52 405.40 0.26 -76.26
By element:
Atomic # 1 Polarization: 30.29 SS G_CDS: 0.19 Total: 30.48 kcal
Atomic # 6 Polarization: 11.71 SS G_CDS: 7.56 Total: 19.26 kcal
Atomic # 7 Polarization: -102.97 SS G_CDS: -7.83 Total: -110.80 kcal
Atomic # 8 Polarization: -58.04 SS G_CDS: -1.68 Total: -59.73 kcal
Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal
Total: -76.52 0.26 -76.26 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571328798.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.849 kcal
(2) G-P(sol) polarization free energy of solvation -76.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds