Wall clock time and date at job start Sat Apr 11 2020 06:28:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42901 * 114.00143 * 2 1
4 4 C 1.52997 * 109.47105 * 180.02562 * 3 2 1
5 5 C 1.52997 * 110.39315 * 57.77111 * 4 3 2
6 6 O 1.42907 * 109.46632 * 302.23206 * 5 4 3
7 7 C 1.54292 * 110.34062 * 180.02562 * 4 3 2
8 8 C 1.54394 * 105.05182 * 118.81889 * 7 4 3
9 9 N 1.48318 * 104.53471 * 336.25430 * 8 7 4
10 10 C 1.34780 * 127.76748 * 219.51107 * 9 8 7
11 11 O 1.21589 * 119.99532 * 179.97438 * 10 9 8
12 12 N 1.34770 * 119.99898 * 359.94367 * 10 9 8
13 13 C 1.46503 * 119.99633 * 179.97438 * 12 10 9
14 14 C 1.53039 * 109.46201 * 275.02428 * 13 12 10
15 15 C 1.53187 * 109.31379 * 178.60079 * 14 13 12
16 16 N 1.46928 * 108.76683 * 54.66257 * 15 14 13
17 17 C 1.36926 * 120.63569 * 126.40412 * 16 15 14
18 18 H 1.08003 * 120.00312 * 207.65755 * 17 16 15
19 19 C 1.38809 * 120.00005 * 27.65809 * 17 16 15
20 20 N 1.31619 * 120.00199 * 17.37646 * 19 17 16
21 21 Si 1.86805 * 120.00131 * 197.38103 * 19 17 16
22 22 H 1.48503 * 109.46944 * 359.97438 * 21 19 17
23 23 H 1.48500 * 109.47441 * 119.99926 * 21 19 17
24 24 H 1.48498 * 109.46961 * 239.99902 * 21 19 17
25 25 C 1.46931 * 118.73093 * 306.38176 * 16 15 14
26 26 C 1.53039 * 109.45840 * 154.97210 * 13 12 10
27 27 C 1.48147 * 104.39287 * 39.46583 * 9 8 7
28 28 H 1.08994 * 109.47203 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47104 * 300.00189 * 1 2 3
30 30 H 1.09004 * 109.47176 * 59.99630 * 1 2 3
31 31 H 1.09006 * 109.46849 * 60.00187 * 3 2 1
32 32 H 1.08995 * 109.47219 * 300.00486 * 3 2 1
33 33 H 1.09000 * 109.47286 * 62.22586 * 5 4 3
34 34 H 1.08993 * 109.47473 * 182.23294 * 5 4 3
35 35 H 0.96698 * 113.99619 * 179.97438 * 6 5 4
36 36 H 1.08999 * 110.33793 * 237.73750 * 7 4 3
37 37 H 1.08996 * 110.34143 * 359.89156 * 7 4 3
38 38 H 1.08996 * 110.40776 * 94.97017 * 8 7 4
39 39 H 1.08999 * 110.40617 * 217.40451 * 8 7 4
40 40 H 0.97004 * 120.00456 * 359.97438 * 12 10 9
41 41 H 1.08994 * 109.46184 * 34.99981 * 13 12 10
42 42 H 1.09002 * 109.49992 * 298.56976 * 14 13 12
43 43 H 1.09007 * 109.49714 * 58.66181 * 14 13 12
44 44 H 1.08996 * 109.59948 * 294.86618 * 15 14 13
45 45 H 1.09004 * 109.58369 * 174.43924 * 15 14 13
46 46 H 0.96997 * 120.00324 * 179.97438 * 20 19 17
47 47 H 1.08997 * 109.58958 * 293.81800 * 25 16 15
48 48 H 1.08996 * 109.58033 * 173.39871 * 25 16 15
49 49 H 1.08993 * 109.50017 * 301.33670 * 26 13 12
50 50 H 1.09001 * 109.50132 * 61.43331 * 26 13 12
51 51 H 1.08996 * 110.40380 * 201.68608 * 27 9 8
52 52 H 1.09000 * 110.50752 * 79.30476 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 -0.0006
5 6 4.0060 0.3803 -1.2141
6 8 3.3945 -0.9112 -1.1957
7 6 4.1844 2.5844 0.0000
8 6 5.0055 2.6451 1.3060
9 7 4.3597 1.6518 2.1983
10 6 4.1314 1.7571 3.5224
11 8 3.5862 0.8489 4.1194
12 7 4.5081 2.8687 4.1848
13 6 4.2594 2.9833 5.6241
14 6 2.8388 3.5027 5.8563
15 6 2.5703 3.5881 7.3620
16 7 3.6206 4.4061 7.9838
17 6 3.2957 5.4814 8.7668
18 1 3.9792 6.3131 8.8526
19 6 2.0877 5.5024 9.4503
20 7 1.4151 4.3859 9.6326
21 14 1.4166 7.1155 10.1115
22 1 2.3556 8.2164 9.7772
23 1 0.0927 7.3898 9.4972
24 1 1.2684 7.0227 11.5861
25 6 5.0262 4.0479 7.7497
26 6 5.2670 3.9570 6.2395
27 6 4.0216 0.5193 1.3050
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 1.6886 1.8464 0.8901
32 1 1.6886 1.8464 -0.8899
33 1 3.7238 0.9029 -2.1281
34 1 5.0897 0.2697 -1.1787
35 1 3.6477 -1.4768 -1.9380
36 1 4.8383 2.6992 -0.8644
37 1 3.4165 3.3580 -0.0012
38 1 6.0424 2.3675 1.1163
39 1 4.9519 3.6423 1.7427
40 1 4.9438 3.5929 3.7088
41 1 4.3690 2.0044 6.0906
42 1 2.7360 4.4925 5.4115
43 1 2.1226 2.8210 5.3973
44 1 2.5835 2.5871 7.7931
45 1 1.5979 4.0495 7.5342
46 1 0.5712 4.4005 10.1106
47 1 5.2398 3.0844 8.2124
48 1 5.6742 4.8127 8.1777
49 1 6.2794 3.5988 6.0535
50 1 5.1412 4.9425 5.7912
51 1 3.2272 -0.0854 1.7422
52 1 4.9031 -0.0929 1.1143
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001677138915.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:14
Heat of formation + Delta-G solvation = -90.604010 kcal
Electronic energy + Delta-G solvation = -31453.111749 eV
Core-core repulsion = 27260.794694 eV
Total energy + Delta-G solvation = -4192.317054 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.53002 -39.06139 -37.48451 -36.96691 -36.27880 -34.32347 -32.84215 -31.82039
-29.97076 -29.71937 -29.37292 -27.30732 -26.09233 -25.55179 -24.61582 -23.23110
-22.17289 -21.79359 -19.84587 -19.56809 -19.31052 -18.01079 -17.36240 -16.71086
-16.52096 -16.25552 -16.00283 -15.76927 -15.30745 -14.89366 -14.51127 -14.41619
-14.15985 -13.90713 -13.63596 -13.46088 -13.24141 -12.97516 -12.92285 -12.67537
-12.54983 -12.32580 -12.27598 -11.98350 -11.64937 -11.44119 -11.38377 -11.20539
-11.08908 -10.87633 -10.79670 -10.71581 -10.33572 -10.18837 -10.17051 -10.03728
-9.89754 -9.71600 -9.67763 -9.50408 -8.85631 -8.52426 -8.32353 -6.65680
-5.75419 -3.17955 2.67315 3.38768 3.39359 3.46361 3.48525 3.53929
3.81860 4.11952 4.22853 4.48155 4.51754 4.63271 4.78328 4.86259
4.96707 5.06418 5.10312 5.25649 5.28085 5.29681 5.31452 5.34988
5.39964 5.43454 5.50410 5.57131 5.58980 5.65780 5.70693 5.73087
5.89145 5.94139 6.13644 6.15460 6.28488 6.43645 6.51308 6.66348
6.69565 6.83379 6.96750 7.02923 7.09694 7.22539 7.44055 7.46265
7.73073 7.82716 8.17794 8.47944 8.84416 9.23993 9.87618 10.44456
11.33062
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.018156 B = 0.002408 C = 0.002269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1541.850167 B =11625.965831 C =12338.578426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.360 6.360
3 C 0.080 3.920
4 C -0.072 4.072
5 C 0.096 3.904
6 O -0.545 6.545
7 C -0.122 4.122
8 C 0.102 3.898
9 N -0.648 5.648
10 C 0.725 3.275
11 O -0.582 6.582
12 N -0.738 5.738
13 C 0.168 3.832
14 C -0.146 4.146
15 C 0.174 3.826
16 N -0.593 5.593
17 C -0.253 4.253
18 H 0.066 0.934
19 C 0.001 3.999
20 N -0.900 5.900
21 Si 0.901 3.099
22 H -0.278 1.278
23 H -0.289 1.289
24 H -0.290 1.290
25 C 0.149 3.851
26 C -0.138 4.138
27 C 0.145 3.855
28 H 0.084 0.916
29 H 0.038 0.962
30 H 0.034 0.966
31 H 0.050 0.950
32 H 0.045 0.955
33 H 0.044 0.956
34 H 0.046 0.954
35 H 0.370 0.630
36 H 0.085 0.915
37 H 0.080 0.920
38 H 0.071 0.929
39 H 0.077 0.923
40 H 0.388 0.612
41 H 0.081 0.919
42 H 0.052 0.948
43 H 0.052 0.948
44 H 0.021 0.979
45 H 0.089 0.911
46 H 0.253 0.747
47 H 0.021 0.979
48 H 0.058 0.942
49 H 0.054 0.946
50 H 0.061 0.939
51 H 0.093 0.907
52 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.750 -5.211 -26.790 28.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.277 6.277
3 C 0.003 3.997
4 C -0.073 4.073
5 C 0.018 3.982
6 O -0.348 6.348
7 C -0.161 4.161
8 C -0.021 4.021
9 N -0.388 5.388
10 C 0.427 3.573
11 O -0.459 6.459
12 N -0.392 5.392
13 C 0.065 3.935
14 C -0.186 4.186
15 C 0.047 3.953
16 N -0.316 5.316
17 C -0.382 4.382
18 H 0.084 0.916
19 C -0.197 4.197
20 N -0.545 5.545
21 Si 0.731 3.269
22 H -0.203 1.203
23 H -0.216 1.216
24 H -0.217 1.217
25 C 0.021 3.979
26 C -0.178 4.178
27 C 0.022 3.978
28 H 0.103 0.897
29 H 0.057 0.943
30 H 0.053 0.947
31 H 0.068 0.932
32 H 0.063 0.937
33 H 0.062 0.938
34 H 0.064 0.936
35 H 0.216 0.784
36 H 0.103 0.897
37 H 0.098 0.902
38 H 0.090 0.910
39 H 0.096 0.904
40 H 0.221 0.779
41 H 0.099 0.901
42 H 0.071 0.929
43 H 0.071 0.929
44 H 0.039 0.961
45 H 0.107 0.893
46 H 0.064 0.936
47 H 0.039 0.961
48 H 0.076 0.924
49 H 0.073 0.927
50 H 0.080 0.920
51 H 0.112 0.888
52 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 6.008 -5.820 -25.505 26.841
hybrid contribution -0.175 1.314 -0.559 1.438
sum 5.834 -4.506 -26.064 27.086
Atomic orbital electron populations
1.22711 0.81923 1.02560 0.99442 1.88091 1.18451 1.26091 1.95115
1.22398 0.91821 0.85732 0.99759 1.21583 0.94731 0.95221 0.95783
1.22067 0.95501 0.84867 0.95811 1.86765 1.71642 1.25388 1.51049
1.22520 0.99860 0.95480 0.98197 1.22309 0.96557 0.93500 0.89768
1.48186 1.64252 1.20411 1.05942 1.15424 0.79226 0.83235 0.79395
1.90948 1.48642 1.40310 1.66047 1.45532 1.64942 1.18213 1.10514
1.20915 0.95901 0.99838 0.76869 1.22571 0.95067 0.99614 1.01384
1.20762 0.94314 0.94317 0.85859 1.44124 0.99126 1.32729 1.55594
1.19207 1.03377 0.94627 1.21023 0.91613 1.25055 0.99969 0.96674
0.98029 1.70051 1.16278 1.24478 1.43671 0.86244 0.78831 0.83547
0.78265 1.20294 1.21607 1.21739 1.20839 0.88043 0.98094 0.90875
1.22336 0.96956 0.98565 0.99903 1.22029 1.00752 0.88190 0.86869
0.89745 0.94338 0.94727 0.93227 0.93722 0.93770 0.93579 0.78441
0.89666 0.90160 0.91049 0.90417 0.77853 0.90071 0.92901 0.92884
0.96113 0.89298 0.93644 0.96145 0.92353 0.92692 0.91988 0.88809
0.91480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 11.01 101.05 1.11 1.41 16
2 O -0.36 -4.34 8.02 -57.53 -0.46 -4.80 16
3 C 0.08 0.82 4.60 37.16 0.17 0.99 16
4 C -0.07 -0.63 0.73 -153.11 -0.11 -0.74 16
5 C 0.10 0.66 5.64 37.16 0.21 0.87 16
6 O -0.55 -4.66 11.35 -57.53 -0.65 -5.32 16
7 C -0.12 -0.79 6.30 -25.32 -0.16 -0.94 16
8 C 0.10 0.82 6.92 -2.31 -0.02 0.80 16
9 N -0.65 -8.22 3.32 -174.87 -0.58 -8.80 16
10 C 0.72 12.22 8.53 -86.92 -0.74 11.48 16
11 O -0.58 -12.60 16.27 5.29 0.09 -12.52 16
12 N -0.74 -11.28 5.05 -58.64 -0.30 -11.58 16
13 C 0.17 3.09 2.42 -67.89 -0.16 2.93 16
14 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16
15 C 0.17 4.35 5.31 -3.71 -0.02 4.33 16
16 N -0.59 -15.05 2.99 -172.32 -0.52 -15.57 16
17 C -0.25 -6.97 9.58 -15.07 -0.14 -7.12 16
18 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16
19 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16
20 N -0.90 -26.69 11.19 55.49 0.62 -26.07 16
21 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16
22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
25 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16
26 C -0.14 -2.35 5.55 -26.61 -0.15 -2.49 16
27 C 0.14 1.74 5.87 -2.41 -0.01 1.72 16
28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16
30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16
31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16
34 H 0.05 0.26 8.10 -51.93 -0.42 -0.17 16
35 H 0.37 1.53 9.12 45.56 0.42 1.94 16
36 H 0.08 0.34 7.71 -51.93 -0.40 -0.06 16
37 H 0.08 0.51 7.71 -51.93 -0.40 0.11 16
38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
39 H 0.08 0.55 6.87 -51.93 -0.36 0.19 16
40 H 0.39 4.73 7.00 -40.82 -0.29 4.44 16
41 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16
42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16
43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16
44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16
45 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16
46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
48 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16
49 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
51 H 0.09 1.46 7.17 -51.93 -0.37 1.09 16
52 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16
LS Contribution 403.73 15.07 6.08 6.08
Total: -1.00 -35.68 403.73 -9.42 -45.10
By element:
Atomic # 1 Polarization: 11.94 SS G_CDS: -8.39 Total: 3.55 kcal
Atomic # 6 Polarization: 13.38 SS G_CDS: -0.29 Total: 13.10 kcal
Atomic # 7 Polarization: -61.24 SS G_CDS: -0.77 Total: -62.01 kcal
Atomic # 8 Polarization: -21.60 SS G_CDS: -1.03 Total: -22.63 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -35.68 -9.42 -45.10 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001677138915.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.503 kcal
(2) G-P(sol) polarization free energy of solvation -35.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds