Wall clock time and date at job start Sat Apr 11 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47301 * 2 1 4 4 N 1.46897 * 109.47194 * 239.99474 * 2 1 3 5 5 C 1.46846 * 110.99667 * 59.78500 * 4 2 1 6 6 C 1.53046 * 109.51963 * 174.15916 * 5 4 2 7 7 C 1.53114 * 109.27806 * 59.17990 * 6 5 4 8 8 C 1.53124 * 109.16100 * 302.34247 * 7 6 5 9 9 C 1.46843 * 111.00109 * 295.57007 * 4 2 1 10 10 H 1.09002 * 109.45921 * 65.82706 * 9 4 2 11 11 C 1.50700 * 109.46416 * 305.85693 * 9 4 2 12 12 O 1.21279 * 120.00012 * 332.59274 * 11 9 4 13 13 N 1.34776 * 119.99685 * 152.59422 * 11 9 4 14 14 C 1.46502 * 120.00396 * 359.97438 * 13 11 9 15 15 C 1.46503 * 119.99884 * 179.97438 * 13 11 9 16 16 C 1.53004 * 109.47198 * 89.99753 * 15 13 11 17 17 O 1.42901 * 109.46997 * 64.99841 * 16 15 13 18 18 C 1.42898 * 113.99622 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46848 * 180.02562 * 18 17 16 20 20 N 1.46495 * 109.47211 * 64.99667 * 19 18 17 21 21 C 1.36941 * 119.99812 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00009 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99983 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00071 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00101 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47087 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47049 * 119.99928 * 25 23 21 28 28 H 1.48498 * 109.47006 * 239.99708 * 25 23 21 29 29 H 1.09003 * 109.46918 * 60.00013 * 1 2 3 30 30 H 1.09005 * 109.47108 * 300.00281 * 1 2 3 31 31 H 1.08993 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46940 * 119.99430 * 2 1 3 33 33 H 1.09004 * 109.46415 * 300.00097 * 3 2 1 34 34 H 1.08993 * 109.47200 * 59.99360 * 3 2 1 35 35 H 1.08995 * 109.47184 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46394 * 294.17037 * 5 4 2 37 37 H 1.09004 * 109.46750 * 54.14545 * 5 4 2 38 38 H 1.08999 * 109.49942 * 179.11638 * 6 5 4 39 39 H 1.08998 * 109.50429 * 299.23343 * 6 5 4 40 40 H 1.08998 * 109.52820 * 62.24822 * 7 6 5 41 41 H 1.08999 * 109.52188 * 182.37759 * 7 6 5 42 42 H 1.08997 * 109.50374 * 177.59644 * 8 7 6 43 43 H 1.09000 * 109.49886 * 297.67703 * 8 7 6 44 44 H 1.08996 * 109.46903 * 90.00286 * 14 13 11 45 45 H 1.09000 * 109.47189 * 210.00486 * 14 13 11 46 46 H 1.09000 * 109.47044 * 330.00310 * 14 13 11 47 47 H 1.08994 * 109.47062 * 209.99587 * 15 13 11 48 48 H 1.08999 * 109.46790 * 329.99856 * 15 13 11 49 49 H 1.09001 * 109.47157 * 185.00522 * 16 15 13 50 50 H 1.09002 * 109.46977 * 305.00128 * 16 15 13 51 51 H 1.09004 * 109.47220 * 300.00158 * 18 17 16 52 52 H 1.08995 * 109.47387 * 60.00383 * 18 17 16 53 53 H 1.09006 * 109.46718 * 185.00010 * 19 18 17 54 54 H 1.08997 * 109.46888 * 304.99425 * 19 18 17 55 55 H 0.97003 * 120.00006 * 0.02562 * 20 19 18 56 56 H 0.96998 * 120.00203 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 1.5446 -0.0298 -2.4205 6 6 2.1893 -0.6871 -3.6430 7 6 1.8218 -2.1732 -3.6706 8 6 2.2846 -2.8297 -2.3669 9 6 1.6372 -2.1102 -1.1814 10 1 0.5529 -2.1948 -1.2535 11 6 2.1055 -2.7404 0.1049 12 8 3.0737 -2.2930 0.6821 13 7 1.4481 -3.8012 0.6139 14 6 0.2782 -4.3414 -0.0830 15 6 1.9036 -4.4142 1.8641 16 6 1.2066 -3.7388 3.0469 17 8 -0.1967 -4.0017 2.9862 18 6 -0.9450 -3.4119 4.0512 19 6 -2.4263 -3.7575 3.8860 20 7 -2.6104 -5.2030 4.0370 21 6 -3.8616 -5.7489 3.9290 22 1 -4.7126 -5.1138 3.7321 23 6 -4.0361 -7.1185 4.0726 24 7 -2.9990 -7.8924 4.3131 25 14 -5.7428 -7.8632 3.9246 26 1 -6.7303 -6.7878 3.6535 27 1 -5.7602 -8.8433 2.8091 28 1 -6.0945 -8.5507 5.1930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 0.4607 -0.1241 -2.4868 37 1 1.8160 1.0255 -2.3902 38 1 1.8244 -0.2052 -4.5501 39 1 3.2725 -0.5810 -3.5844 40 1 0.7415 -2.2797 -3.7684 41 1 2.3133 -2.6544 -4.5162 42 1 1.9879 -3.8785 -2.3622 43 1 3.3694 -2.7579 -2.2886 44 1 0.5976 -5.1086 -0.7883 45 1 -0.4076 -4.7781 0.6430 46 1 -0.2259 -3.5393 -0.6222 47 1 1.6603 -5.4767 1.8575 48 1 2.9823 -4.2890 1.9582 49 1 1.6102 -4.1327 3.9797 50 1 1.3770 -2.6631 3.0030 51 1 -0.5862 -3.7988 5.0051 52 1 -0.8193 -2.3295 4.0277 53 1 -3.0081 -3.2357 4.6459 54 1 -2.7629 -3.4498 2.8960 55 1 -1.8460 -5.7734 4.2142 56 1 -3.1208 -8.8495 4.4131 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755876623.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:10 Heat of formation + Delta-G solvation = -83.953720 kcal Electronic energy + Delta-G solvation = -32332.783112 eV Core-core repulsion = 28276.587530 eV Total energy + Delta-G solvation = -4056.195582 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 341.247 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.80611 -39.71252 -38.86323 -36.81637 -36.26066 -35.93603 -33.49299 -32.64382 -31.22320 -30.90460 -29.28898 -28.18729 -27.49295 -25.86339 -25.49153 -24.94361 -23.48181 -22.80415 -21.60761 -20.75868 -19.69927 -19.24405 -18.38243 -17.76423 -17.40788 -17.19674 -16.72113 -16.64880 -16.14447 -15.85819 -15.61848 -15.41521 -15.17132 -14.99730 -14.80641 -14.61682 -14.44729 -14.23422 -14.18075 -13.88725 -13.77582 -13.50667 -13.37736 -13.19771 -13.03705 -12.91378 -12.78305 -12.73870 -12.69497 -12.56646 -12.36660 -12.10724 -12.07043 -11.98906 -11.92515 -11.69933 -11.60893 -11.52705 -11.18259 -10.97524 -10.65635 -10.46012 -9.68444 -9.19933 -8.97988 -7.92525 -5.21264 1.48416 1.49143 1.54642 1.59301 1.91484 2.57317 2.74426 2.86183 3.41198 3.43283 3.80264 3.85328 3.90806 3.94049 4.02851 4.03679 4.11905 4.15221 4.24248 4.27687 4.29095 4.34033 4.36326 4.43745 4.44949 4.50640 4.56260 4.62415 4.64258 4.66813 4.71847 4.76156 4.77283 4.81748 4.90085 4.95482 4.97563 5.01459 5.03222 5.10898 5.12041 5.17647 5.23282 5.26350 5.35029 5.44820 5.48467 5.50056 6.00291 6.17511 6.25844 6.30116 6.42026 7.15421 7.35642 8.10905 8.35718 9.31154 Molecular weight = 341.25amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.002568 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.208209 B =10899.759145 C =11166.903723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 C -0.134 4.134 4 N -0.521 5.521 5 C 0.048 3.952 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.103 4.103 9 C 0.072 3.928 10 H 0.071 0.929 11 C 0.516 3.484 12 O -0.563 6.563 13 N -0.605 5.605 14 C 0.079 3.921 15 C 0.120 3.880 16 C 0.050 3.950 17 O -0.388 6.388 18 C 0.067 3.933 19 C 0.154 3.846 20 N -0.739 5.739 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.266 1.266 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.065 0.935 50 H 0.041 0.959 51 H 0.046 0.954 52 H 0.069 0.931 53 H 0.042 0.958 54 H 0.023 0.977 55 H 0.375 0.625 56 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 17.061 -16.366 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.040 4.040 3 C -0.192 4.192 4 N -0.246 5.246 5 C -0.079 4.079 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.039 4.039 10 H 0.088 0.912 11 C 0.304 3.696 12 O -0.441 6.441 13 N -0.337 5.337 14 C -0.063 4.063 15 C -0.003 4.003 16 C -0.028 4.028 17 O -0.308 6.308 18 C -0.010 4.010 19 C 0.027 3.973 20 N -0.383 5.383 21 C -0.375 4.375 22 H 0.093 0.907 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.083 0.917 50 H 0.060 0.940 51 H 0.065 0.935 52 H 0.087 0.913 53 H 0.059 0.941 54 H 0.041 0.959 55 H 0.207 0.793 56 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.313 17.239 -16.237 26.691 hybrid contribution -1.332 -0.931 0.808 1.815 sum 10.981 16.308 -15.428 24.991 Atomic orbital electron populations 1.22430 0.96973 1.01384 1.03151 1.21777 0.92795 0.96323 0.93119 1.21772 1.01261 0.93665 1.02455 1.61936 1.60144 0.99826 1.02738 1.22310 0.97648 0.99221 0.88699 1.21618 1.01183 0.95364 0.97161 1.21569 1.01628 0.95807 0.96242 1.21522 1.00633 0.99080 0.92918 1.21672 0.99126 0.90255 0.92864 0.91170 1.20893 0.82579 0.79520 0.86565 1.90644 1.28394 1.62554 1.62526 1.47885 1.30305 1.31382 1.24137 1.21966 0.87048 0.99716 0.97608 1.21518 0.99049 0.97865 0.81852 1.22904 0.81952 0.99018 0.98923 1.87969 1.18343 1.75722 1.48763 1.22631 0.91486 0.97064 0.89781 1.20828 0.93007 0.85165 0.98293 1.42482 1.06466 1.02890 1.86422 1.19667 0.87124 0.91303 1.39427 0.90685 1.25562 1.00928 0.96759 1.03534 1.69839 1.30408 1.03944 1.57693 0.85076 0.79775 0.78222 0.76696 1.19027 1.21986 1.22112 0.90912 0.91828 0.94035 0.92023 0.91126 0.91747 0.92799 0.94080 0.89245 0.89448 0.91842 0.91230 0.90014 0.90368 0.92018 0.90812 0.91388 0.90325 0.89118 0.88374 0.91737 0.94027 0.93536 0.91302 0.94076 0.95924 0.79264 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 8.50 71.98 0.61 -2.89 16 2 C 0.07 1.48 2.56 44.92 0.11 1.59 16 3 C -0.13 -2.36 8.98 71.98 0.65 -1.71 16 4 N -0.52 -10.80 4.24 -850.38 -3.61 -14.41 16 5 C 0.05 0.72 4.64 86.33 0.40 1.12 16 6 C -0.12 -1.44 6.09 30.65 0.19 -1.25 16 7 C -0.11 -1.44 6.00 30.67 0.18 -1.25 16 8 C -0.10 -1.79 5.36 30.65 0.16 -1.63 16 9 C 0.07 1.52 1.16 44.19 0.05 1.57 16 10 H 0.07 1.40 4.53 -2.39 -0.01 1.39 16 11 C 0.52 13.82 5.78 87.66 0.51 14.33 16 12 O -0.56 -18.72 14.67 -3.03 -0.04 -18.77 16 13 N -0.60 -15.48 2.84 -846.75 -2.40 -17.89 16 14 C 0.08 1.82 10.02 127.77 1.28 3.10 16 15 C 0.12 3.17 5.81 86.38 0.50 3.67 16 16 C 0.05 1.41 6.28 71.98 0.45 1.87 16 17 O -0.39 -13.35 9.11 -148.98 -1.36 -14.71 16 18 C 0.07 2.23 6.07 71.98 0.44 2.67 16 19 C 0.15 6.21 6.64 86.38 0.57 6.78 16 20 N -0.74 -38.24 5.55 -343.45 -1.91 -40.15 16 21 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 24 N -0.97 -59.54 13.06 21.65 0.28 -59.25 16 25 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H 0.07 1.17 6.53 -2.39 -0.02 1.16 16 30 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.04 0.91 6.64 -2.39 -0.02 0.89 16 32 H 0.06 1.76 5.79 -2.39 -0.01 1.75 16 33 H 0.07 0.99 6.28 -2.39 -0.01 0.98 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 0.59 6.63 -2.39 -0.02 0.57 16 37 H 0.09 1.20 6.01 -2.38 -0.01 1.18 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.97 7.11 -2.39 -0.02 1.96 16 46 H 0.08 1.57 5.81 -2.39 -0.01 1.56 16 47 H 0.09 2.36 8.07 -2.39 -0.02 2.35 16 48 H 0.10 2.52 7.42 -2.39 -0.02 2.50 16 49 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 52 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 53 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 54 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 55 H 0.38 20.87 7.67 -92.71 -0.71 20.16 16 56 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -70.10 424.60 0.55 -69.55 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.14 Total: 36.29 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 7.42 Total: 11.22 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -7.63 Total: -131.70 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.40 Total: -33.48 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.10 0.55 -69.55 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876623.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.404 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds