Wall clock time and date at job start Sat Apr 11 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46902 * 2 1 4 4 C 1.52999 * 109.47328 * 119.99596 * 2 1 3 5 5 C 1.52997 * 109.47213 * 65.00163 * 4 2 1 6 6 H 1.09002 * 109.47016 * 305.00335 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00076 * 5 4 2 8 8 N 1.46505 * 109.47212 * 184.99959 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46968 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47299 * 119.99957 * 13 11 9 16 16 H 1.48495 * 109.47075 * 240.00117 * 13 11 9 17 17 N 1.46503 * 109.46834 * 64.99838 * 5 4 2 18 18 C 1.34773 * 120.00358 * 274.99972 * 17 5 4 19 19 O 1.21287 * 119.99899 * 0.02562 * 18 17 5 20 20 C 1.50701 * 120.00419 * 179.97438 * 18 17 5 21 21 H 1.08998 * 109.47026 * 300.00705 * 20 18 17 22 22 C 1.53004 * 109.46915 * 60.00341 * 20 18 17 23 23 C 1.52994 * 109.47242 * 180.02562 * 20 18 17 24 24 N 1.46907 * 109.47277 * 175.00159 * 23 20 18 25 25 C 1.47019 * 110.99725 * 293.63883 * 24 23 20 26 26 C 1.53091 * 109.25543 * 177.60450 * 25 24 23 27 27 O 1.43018 * 109.25833 * 56.84684 * 26 25 24 28 28 C 1.43018 * 113.73865 * 301.32736 * 27 26 25 29 29 C 1.47005 * 111.00192 * 170.00021 * 24 23 20 30 30 H 1.08997 * 109.46885 * 60.00458 * 1 2 3 31 31 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47046 * 300.00060 * 1 2 3 33 33 H 1.08995 * 109.47558 * 239.99959 * 2 1 3 34 34 H 1.08997 * 109.47113 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46569 * 299.99697 * 3 2 1 36 36 H 1.08997 * 109.47318 * 60.00107 * 3 2 1 37 37 H 1.08997 * 109.47204 * 305.00491 * 4 2 1 38 38 H 1.09001 * 109.47433 * 185.00514 * 4 2 1 39 39 H 1.09002 * 109.47153 * 64.99951 * 7 5 4 40 40 H 1.09001 * 109.46832 * 305.00142 * 7 5 4 41 41 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 42 42 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 43 43 H 0.97007 * 119.99919 * 95.00541 * 17 5 4 44 44 H 1.08993 * 109.46945 * 180.02562 * 22 20 18 45 45 H 1.09005 * 109.46525 * 300.00304 * 22 20 18 46 46 H 1.09003 * 109.46737 * 59.99895 * 22 20 18 47 47 H 1.09006 * 109.47407 * 294.99681 * 23 20 18 48 48 H 1.09000 * 109.47366 * 55.00172 * 23 20 18 49 49 H 1.08999 * 109.49924 * 297.53807 * 25 24 23 50 50 H 1.09001 * 109.50817 * 57.66850 * 25 24 23 51 51 H 1.08996 * 109.50835 * 296.91287 * 26 25 24 52 52 H 1.09004 * 109.54381 * 176.80168 * 26 25 24 53 53 H 1.09004 * 109.50577 * 298.73351 * 28 27 26 54 54 H 1.08999 * 109.54211 * 178.62913 * 28 27 26 55 55 H 1.09005 * 109.50559 * 302.32638 * 29 24 23 56 56 H 1.09000 * 109.50672 * 62.45950 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6354 -2.1954 1.1881 6 1 0.5564 -2.2706 1.0528 7 6 2.0355 -2.8887 2.4920 8 7 1.7571 -4.3232 2.3877 9 6 2.0361 -5.1532 3.4405 10 1 2.4610 -4.7501 4.3480 11 6 1.7728 -6.5124 3.3415 12 7 1.2554 -7.0037 2.2355 13 14 2.1527 -7.6445 4.7781 14 1 2.7239 -6.8511 5.8959 15 1 0.9031 -8.3072 5.2301 16 1 3.1327 -8.6749 4.3504 17 7 2.3149 -2.8419 0.0627 18 6 1.7816 -2.7779 -1.1734 19 8 0.7394 -2.1845 -1.3542 20 6 2.4809 -3.4425 -2.3311 21 1 3.4752 -3.0121 -2.4506 22 6 2.6040 -4.9431 -2.0591 23 6 1.6724 -3.2203 -3.6109 24 7 2.4119 -3.7638 -4.7579 25 6 3.6475 -3.0036 -4.9962 26 6 4.4147 -3.6385 -6.1590 27 8 3.5722 -3.6785 -7.3140 28 6 2.3601 -4.4117 -7.1174 29 6 1.5721 -3.7846 -5.9643 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -0.2617 2.1370 38 1 3.1264 -0.6442 1.2952 39 1 1.4634 -2.4667 3.3183 40 1 3.0998 -2.7372 2.6722 41 1 1.3758 -4.6852 1.5725 42 1 1.0718 -7.9536 2.1661 43 1 3.1486 -3.3163 0.2072 44 1 3.1102 -5.4237 -2.8963 45 1 3.1803 -5.1009 -1.1474 46 1 1.6097 -5.3734 -1.9396 47 1 0.7108 -3.7267 -3.5257 48 1 1.5091 -2.1526 -3.7568 49 1 3.3978 -1.9721 -5.2449 50 1 4.2656 -3.0229 -4.0986 51 1 4.7109 -4.6522 -5.8893 52 1 5.3030 -3.0455 -6.3768 53 1 2.5966 -5.4479 -6.8756 54 1 1.7618 -4.3779 -8.0279 55 1 0.6753 -4.3740 -5.7734 56 1 1.2894 -2.7655 -6.2285 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271311350.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:21 Heat of formation + Delta-G solvation = -101.349681 kcal Electronic energy + Delta-G solvation = -32127.750605 eV Core-core repulsion = 28070.800678 eV Total energy + Delta-G solvation = -4056.949927 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 341.247 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39868 -40.42206 -38.30255 -37.03525 -36.43229 -35.05362 -34.03368 -32.78253 -32.10093 -30.52401 -28.81051 -27.95796 -27.17239 -26.18405 -25.00639 -24.75847 -23.83445 -21.95922 -21.37133 -20.83089 -20.58907 -19.22045 -18.31947 -17.27700 -17.15753 -17.00663 -16.94257 -16.50164 -16.21254 -15.98315 -15.72299 -15.45764 -15.43942 -15.18990 -14.78846 -14.52698 -14.49649 -14.38788 -14.11255 -13.66954 -13.55365 -13.26347 -13.12256 -12.98892 -12.98229 -12.90592 -12.82158 -12.59687 -12.51756 -12.35145 -12.30760 -12.15983 -12.04196 -11.87467 -11.77639 -11.60709 -11.46047 -11.37604 -11.22208 -10.96928 -10.65387 -10.47883 -9.81800 -9.40718 -8.98159 -7.92092 -5.21150 1.48632 1.49676 1.58974 1.77568 2.23868 2.57081 2.82881 2.99522 3.42174 3.66214 3.67939 3.87724 3.93185 3.98073 4.05099 4.07737 4.10081 4.21488 4.26358 4.29384 4.32983 4.36149 4.41471 4.45093 4.63238 4.68046 4.71091 4.74676 4.76931 4.81089 4.83588 4.89439 4.89983 4.91756 4.95021 5.00538 5.02103 5.03041 5.09650 5.10557 5.17529 5.26605 5.39299 5.39996 5.52911 5.57597 5.65354 5.72218 5.89525 5.95629 6.19241 6.28511 6.70696 7.36380 7.40389 8.10105 8.34424 9.30575 Molecular weight = 341.25amu Principal moments of inertia in cm(-1) A = 0.008774 B = 0.003280 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.600203 B = 8534.330317 C =11007.188637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.113 4.113 5 C 0.147 3.853 6 H 0.063 0.937 7 C 0.144 3.856 8 N -0.741 5.741 9 C -0.242 4.242 10 H 0.076 0.924 11 C -0.070 4.070 12 N -0.964 5.964 13 Si 0.969 3.031 14 H -0.267 1.267 15 H -0.298 1.298 16 H -0.293 1.293 17 N -0.705 5.705 18 C 0.514 3.486 19 O -0.562 6.562 20 C -0.094 4.094 21 H 0.114 0.886 22 C -0.122 4.122 23 C 0.089 3.911 24 N -0.537 5.537 25 C 0.013 3.987 26 C 0.063 3.937 27 O -0.405 6.405 28 C 0.066 3.934 29 C 0.018 3.982 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.037 0.963 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.406 0.594 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.035 0.965 47 H 0.066 0.934 48 H 0.034 0.966 49 H 0.036 0.964 50 H 0.098 0.902 51 H 0.063 0.937 52 H 0.115 0.885 53 H 0.062 0.938 54 H 0.114 0.886 55 H 0.090 0.910 56 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 12.263 -15.545 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.152 4.152 5 C 0.042 3.958 6 H 0.081 0.919 7 C 0.018 3.982 8 N -0.384 5.384 9 C -0.374 4.374 10 H 0.094 0.906 11 C -0.263 4.263 12 N -0.614 5.614 13 Si 0.799 3.201 14 H -0.191 1.191 15 H -0.226 1.226 16 H -0.220 1.220 17 N -0.356 5.356 18 C 0.301 3.699 19 O -0.442 6.442 20 C -0.115 4.115 21 H 0.131 0.869 22 C -0.180 4.180 23 C -0.039 4.039 24 N -0.262 5.262 25 C -0.115 4.115 26 C -0.013 4.013 27 O -0.324 6.324 28 C -0.011 4.011 29 C -0.110 4.110 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.241 0.759 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.117 0.883 51 H 0.081 0.919 52 H 0.132 0.868 53 H 0.080 0.920 54 H 0.132 0.868 55 H 0.109 0.891 56 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.046 12.275 -15.536 20.703 hybrid contribution -0.400 -0.613 0.822 1.100 sum 5.646 11.662 -14.715 19.606 Atomic orbital electron populations 1.21751 0.95897 1.01394 0.99918 1.21055 0.95702 0.96055 0.97781 1.21812 1.00941 0.95358 1.01700 1.21946 1.01657 0.92752 0.98806 1.21131 0.97024 0.92527 0.85131 0.91856 1.21105 0.98349 0.83975 0.94813 1.42503 1.76459 1.02796 1.16645 1.19624 1.33395 0.89452 0.94929 0.90586 1.25481 1.02584 0.98489 0.99751 1.69823 1.51302 1.12455 1.27859 0.85144 0.76711 0.78979 0.79315 1.19100 1.22597 1.22025 1.45923 1.27222 1.55298 1.07111 1.20851 0.85209 0.79260 0.84595 1.90670 1.24274 1.44349 1.84922 1.21187 1.00703 0.97672 0.91934 0.86860 1.21528 1.01542 0.92725 1.02191 1.21656 0.96047 0.97574 0.88626 1.62171 1.06286 1.53482 1.04297 1.22920 0.92537 0.95500 1.00548 1.22786 0.92979 1.01450 0.84122 1.87950 1.32540 1.75250 1.36683 1.22752 0.85259 0.95026 0.98085 1.22811 0.97208 1.00492 0.90533 0.94111 0.93211 0.93390 0.92170 0.92277 0.93044 0.92273 0.90392 0.90595 0.95003 0.94500 0.79233 0.94188 0.75913 0.89670 0.92957 0.94623 0.91552 0.94792 0.94567 0.88341 0.91910 0.86754 0.91990 0.86821 0.89140 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.04 71.98 0.58 -3.15 16 2 C -0.09 -2.22 2.38 -10.79 -0.03 -2.24 16 3 C -0.14 -2.85 9.19 71.98 0.66 -2.19 16 4 C -0.11 -2.85 4.36 30.59 0.13 -2.71 16 5 C 0.15 4.68 2.33 44.99 0.10 4.78 16 6 H 0.06 2.39 5.92 -2.39 -0.01 2.37 16 7 C 0.14 5.38 5.82 86.38 0.50 5.88 16 8 N -0.74 -35.85 5.43 -343.45 -1.87 -37.72 16 9 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 10 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 11 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 12 N -0.96 -57.64 13.06 21.65 0.28 -57.36 16 13 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 17 N -0.70 -21.07 4.36 -442.53 -1.93 -23.00 16 18 C 0.51 15.41 5.71 87.66 0.50 15.91 16 19 O -0.56 -19.56 10.88 -3.05 -0.03 -19.60 16 20 C -0.09 -2.26 2.65 -11.54 -0.03 -2.29 16 21 H 0.11 2.21 6.30 -2.39 -0.02 2.19 16 22 C -0.12 -3.28 8.98 71.98 0.65 -2.63 16 23 C 0.09 2.14 3.69 86.30 0.32 2.46 16 24 N -0.54 -10.92 4.18 -895.22 -3.74 -14.66 16 25 C 0.01 0.22 5.44 86.31 0.47 0.69 16 26 C 0.06 1.00 7.01 72.01 0.50 1.50 16 27 O -0.41 -7.93 10.83 -148.98 -1.61 -9.54 16 28 C 0.07 1.07 7.01 72.01 0.50 1.58 16 29 C 0.02 0.33 5.64 86.31 0.49 0.81 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.69 4.76 -2.39 -0.01 1.67 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.71 5.19 -2.39 -0.01 1.70 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.38 19.70 7.33 -92.71 -0.68 19.02 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.41 11.67 8.02 -92.70 -0.74 10.93 16 44 H 0.08 2.03 7.75 -2.39 -0.02 2.01 16 45 H 0.05 1.50 7.56 -2.38 -0.02 1.48 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.83 8.04 -2.38 -0.02 1.81 16 48 H 0.03 0.88 7.93 -2.39 -0.02 0.86 16 49 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 50 H 0.10 1.48 6.29 -2.39 -0.02 1.46 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 53 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 54 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 55 H 0.09 1.60 8.09 -2.38 -0.02 1.58 16 56 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -65.09 422.96 -0.78 -65.87 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -0.57 Total: 45.98 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.66 Total: 2.76 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -7.26 Total: -132.74 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.65 Total: -29.14 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.09 -0.78 -65.87 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271311350.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.478 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds