Wall clock time and date at job start Sat Apr 11 2020 06:28:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42897 * 113.99892 * 2 1
4 4 C 1.53005 * 109.47190 * 179.97438 * 3 2 1
5 5 N 1.46508 * 109.46751 * 67.49372 * 4 3 2
6 6 C 1.46502 * 120.00005 * 278.19907 * 5 4 3
7 7 C 1.50699 * 109.47015 * 270.00431 * 6 5 4
8 8 H 1.07991 * 120.00215 * 0.02562 * 7 6 5
9 9 C 1.37876 * 119.99828 * 179.97438 * 7 6 5
10 10 N 1.31522 * 119.99867 * 0.02562 * 9 7 6
11 11 Si 1.86795 * 120.00283 * 179.97438 * 9 7 6
12 12 H 1.48499 * 109.47258 * 89.99727 * 11 9 7
13 13 H 1.48503 * 109.47654 * 210.00226 * 11 9 7
14 14 H 1.48505 * 109.46823 * 330.00254 * 11 9 7
15 15 C 1.34775 * 120.00060 * 98.20126 * 5 4 3
16 16 O 1.21559 * 120.00125 * 186.09686 * 15 5 4
17 17 C 1.47803 * 120.00001 * 6.10461 * 15 5 4
18 18 C 1.40068 * 120.54331 * 315.43410 * 17 15 5
19 19 C 1.38278 * 118.30011 * 179.97438 * 18 17 15
20 20 C 1.38506 * 119.29783 * 0.02562 * 19 18 17
21 21 Br 1.89093 * 119.47782 * 179.97438 * 20 19 18
22 22 N 1.32018 * 121.05138 * 0.27299 * 20 19 18
23 23 C 1.31690 * 121.86455 * 359.43043 * 22 20 19
24 24 H 1.08991 * 109.47533 * 300.00543 * 1 2 3
25 25 H 1.08996 * 109.46630 * 60.00579 * 1 2 3
26 26 H 1.08996 * 109.47065 * 179.97438 * 1 2 3
27 27 H 1.09002 * 109.47627 * 59.99544 * 3 2 1
28 28 H 1.09001 * 109.46768 * 299.99254 * 3 2 1
29 29 H 1.08998 * 109.46989 * 307.49583 * 4 3 2
30 30 H 1.08998 * 109.47478 * 187.48994 * 4 3 2
31 31 H 1.09006 * 109.46935 * 30.00028 * 6 5 4
32 32 H 1.08993 * 109.46943 * 150.00113 * 6 5 4
33 33 H 0.97003 * 119.99560 * 180.02562 * 10 9 7
34 34 H 1.07993 * 120.85563 * 359.95417 * 18 17 15
35 35 H 1.08000 * 120.35705 * 180.02562 * 19 18 17
36 36 H 1.08001 * 119.71382 * 180.31039 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1847 0.0006
5 7 3.9810 0.6188 -1.2752
6 6 3.9402 -0.8301 -1.4880
7 6 5.2471 -1.4392 -1.0498
8 1 6.0296 -0.8102 -0.6521
9 6 5.4432 -2.7998 -1.1555
10 7 4.4900 -3.5660 -1.6394
11 14 7.0634 -3.5549 -0.6130
12 1 6.9793 -3.9293 0.8215
13 1 7.3416 -4.7665 -1.4254
14 1 8.1574 -2.5690 -0.8039
15 6 4.4285 1.4312 -2.2531
16 8 4.6933 0.9752 -3.3484
17 6 4.5975 2.8764 -1.9937
18 6 3.6092 3.5975 -1.3116
19 6 3.8155 4.9473 -1.0936
20 6 4.9812 5.5377 -1.5527
21 35 5.2681 7.3834 -1.2581
22 7 5.8927 4.8336 -2.1980
23 6 5.7438 3.5449 -2.4245
24 1 -0.3634 0.5139 0.8898
25 1 -0.3632 0.5137 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 1.6886 1.8465 0.8899
28 1 1.6887 1.8462 -0.8901
29 1 3.8480 0.5326 0.8162
30 1 3.9781 2.1717 0.1346
31 1 3.1254 -1.2601 -0.9053
32 1 3.7792 -1.0375 -2.5458
33 1 4.6280 -4.5233 -1.7134
34 1 2.7091 3.1119 -0.9651
35 1 3.0754 5.5351 -0.5709
36 1 6.5141 3.0015 -2.9516
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000091448582.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:59
Heat of formation + Delta-G solvation = -25.007731 kcal
Electronic energy + Delta-G solvation = -21899.098450 eV
Core-core repulsion = 18430.689397 eV
Total energy + Delta-G solvation = -3468.409053 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 342.037 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.76142 -38.80989 -37.61503 -35.12332 -33.34042 -32.54891 -32.36806 -30.07099
-29.77816 -27.26435 -26.10005 -24.37130 -23.76049 -22.89302 -22.39161 -19.23972
-17.37139 -17.16025 -16.80744 -16.49502 -15.99963 -15.57760 -15.34804 -14.85371
-14.67576 -14.42684 -14.13704 -13.78720 -13.59918 -13.05684 -12.43948 -12.29249
-11.99308 -11.86897 -11.82478 -11.32959 -11.19017 -10.97766 -10.91201 -10.73066
-10.51580 -10.17876 -10.07625 -9.97487 -9.65077 -9.51090 -9.24495 -9.02719
-8.40061 -7.78829 -6.02362 -4.07012 0.45271 0.91822 1.08663 3.02623
3.31227 3.37819 3.40438 3.50525 3.74564 3.89638 4.21708 4.44801
4.53481 4.61769 4.70100 4.88622 5.15798 5.20490 5.31333 5.32397
5.39463 5.43901 5.46930 5.49822 5.60117 5.79184 5.81806 6.11072
6.21523 7.09602 7.28871 7.41538 7.46173 7.55592 7.94195 8.24274
8.26753 8.74608 8.98399 9.57043 11.05738
Molecular weight = 342.04amu
Principal moments of inertia in cm(-1)
A = 0.014580 B = 0.003309 C = 0.002864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1920.024974 B = 8459.852223 C = 9774.867419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.366 6.366
3 C 0.040 3.960
4 C 0.098 3.902
5 N -0.577 5.577
6 C 0.245 3.755
7 C -0.530 4.530
8 H 0.056 0.944
9 C 0.063 3.937
10 N -0.891 5.891
11 Si 0.896 3.104
12 H -0.280 1.280
13 H -0.285 1.285
14 H -0.274 1.274
15 C 0.547 3.453
16 O -0.525 6.525
17 C -0.147 4.147
18 C -0.058 4.058
19 C -0.144 4.144
20 C 0.129 3.871
21 Br -0.011 7.011
22 N -0.461 5.461
23 C 0.158 3.842
24 H 0.036 0.964
25 H 0.037 0.963
26 H 0.086 0.914
27 H 0.056 0.944
28 H 0.048 0.952
29 H 0.095 0.905
30 H 0.087 0.913
31 H 0.056 0.944
32 H 0.043 0.957
33 H 0.263 0.737
34 H 0.156 0.844
35 H 0.149 0.851
36 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.074 20.771 5.350 22.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.284 6.284
3 C -0.038 4.038
4 C -0.026 4.026
5 N -0.307 5.307
6 C 0.127 3.873
7 C -0.569 4.569
8 H 0.074 0.926
9 C -0.139 4.139
10 N -0.530 5.530
11 Si 0.724 3.276
12 H -0.207 1.207
13 H -0.211 1.211
14 H -0.199 1.199
15 C 0.331 3.669
16 O -0.402 6.402
17 C -0.153 4.153
18 C -0.085 4.085
19 C -0.166 4.166
20 C -0.088 4.088
21 Br 0.073 6.927
22 N -0.171 5.171
23 C -0.001 4.001
24 H 0.054 0.946
25 H 0.055 0.945
26 H 0.105 0.895
27 H 0.074 0.926
28 H 0.066 0.934
29 H 0.114 0.886
30 H 0.105 0.895
31 H 0.074 0.926
32 H 0.061 0.939
33 H 0.072 0.928
34 H 0.173 0.827
35 H 0.167 0.833
36 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -5.004 21.228 4.537 22.277
hybrid contribution -0.161 -1.021 0.601 1.196
sum -5.165 20.206 5.138 21.480
Atomic orbital electron populations
1.22734 0.81823 1.02885 0.99176 1.88149 1.18919 1.26234 1.95088
1.23204 0.95056 0.86061 0.99512 1.21804 0.91549 1.00187 0.89106
1.48183 1.60325 1.10025 1.12134 1.19488 0.97782 0.71105 0.98913
1.21427 1.00371 0.92467 1.42651 0.92572 1.24898 0.96838 0.96984
0.95170 1.69945 1.32662 1.05161 1.45229 0.86529 0.83853 0.78799
0.78417 1.20658 1.21100 1.19924 1.17915 0.79295 0.84309 0.85348
1.90802 1.50590 1.75850 1.22960 1.21530 0.96887 0.97086 0.99805
1.22289 0.99198 0.93310 0.93693 1.21902 0.97501 0.95407 1.01806
1.22930 0.93349 0.93344 0.99170 1.96778 1.97344 1.03815 1.94758
1.67516 1.29380 1.07758 1.12426 1.22994 0.95592 0.88249 0.93288
0.94568 0.94476 0.89534 0.92564 0.93438 0.88624 0.89514 0.92626
0.93923 0.92757 0.82714 0.83286 0.80708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 11.01 101.05 1.11 1.48 16
2 O -0.37 -5.92 8.93 -35.23 -0.31 -6.23 16
3 C 0.04 0.51 5.23 37.16 0.19 0.70 16
4 C 0.10 1.50 5.34 -4.03 -0.02 1.48 16
5 N -0.58 -11.74 2.46 -176.18 -0.43 -12.18 16
6 C 0.25 6.30 5.07 -5.19 -0.03 6.28 16
7 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16
8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16
9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16
10 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16
11 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16
12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
14 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16
15 C 0.55 11.04 7.30 -12.35 -0.09 10.95 16
16 O -0.52 -12.85 16.54 5.31 0.09 -12.76 16
17 C -0.15 -2.28 5.13 -104.82 -0.54 -2.82 16
18 C -0.06 -0.69 7.52 -38.88 -0.29 -0.98 16
19 C -0.14 -1.49 9.81 -39.47 -0.39 -1.87 16
20 C 0.13 1.58 7.17 -17.37 -0.12 1.46 16
21 Br -0.01 -0.11 33.86 -68.01 -2.30 -2.42 16
22 N -0.46 -6.64 10.31 -11.29 -0.12 -6.76 16
23 C 0.16 2.39 10.86 -17.14 -0.19 2.20 16
24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16
27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.05 0.57 6.41 -51.93 -0.33 0.24 16
29 H 0.10 1.57 8.13 -51.93 -0.42 1.15 16
30 H 0.09 1.09 4.96 -51.93 -0.26 0.83 16
31 H 0.06 1.48 6.45 -51.93 -0.33 1.14 16
32 H 0.04 1.25 7.35 -51.93 -0.38 0.87 16
33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
34 H 0.16 1.56 3.79 -52.49 -0.20 1.36 16
35 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16
36 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16
LS Contribution 327.42 15.07 4.93 4.93
Total: -1.00 -33.44 327.42 -7.22 -40.66
By element:
Atomic # 1 Polarization: 2.22 SS G_CDS: -4.01 Total: -1.79 kcal
Atomic # 6 Polarization: 6.22 SS G_CDS: -0.78 Total: 5.44 kcal
Atomic # 7 Polarization: -44.72 SS G_CDS: 0.19 Total: -44.53 kcal
Atomic # 8 Polarization: -18.77 SS G_CDS: -0.23 Total: -18.99 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal
Atomic # 35 Polarization: -0.11 SS G_CDS: -2.30 Total: -2.42 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -33.44 -7.22 -40.66 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000091448582.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.655 kcal
(2) G-P(sol) polarization free energy of solvation -33.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.788 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds