Wall clock time and date at job start Sat Apr 11 2020 06:28:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42897 * 113.99892 * 2 1
4 4 C 1.53005 * 109.47190 * 179.97438 * 3 2 1
5 5 N 1.46508 * 109.46751 * 67.49372 * 4 3 2
6 6 C 1.46502 * 120.00005 * 278.19907 * 5 4 3
7 7 C 1.50699 * 109.47015 * 270.00431 * 6 5 4
8 8 H 1.07991 * 120.00215 * 0.02562 * 7 6 5
9 9 C 1.37876 * 119.99828 * 179.97438 * 7 6 5
10 10 N 1.31522 * 119.99867 * 0.02562 * 9 7 6
11 11 Si 1.86795 * 120.00283 * 179.97438 * 9 7 6
12 12 H 1.48499 * 109.47258 * 89.99727 * 11 9 7
13 13 H 1.48503 * 109.47654 * 210.00226 * 11 9 7
14 14 H 1.48505 * 109.46823 * 330.00254 * 11 9 7
15 15 C 1.34775 * 120.00060 * 98.20126 * 5 4 3
16 16 O 1.21559 * 120.00125 * 186.09686 * 15 5 4
17 17 C 1.47803 * 120.00001 * 6.10461 * 15 5 4
18 18 C 1.40068 * 120.54331 * 315.43410 * 17 15 5
19 19 C 1.38278 * 118.30011 * 179.97438 * 18 17 15
20 20 C 1.38506 * 119.29783 * 0.02562 * 19 18 17
21 21 Br 1.89093 * 119.47782 * 179.97438 * 20 19 18
22 22 N 1.32018 * 121.05138 * 0.27299 * 20 19 18
23 23 C 1.31690 * 121.86455 * 359.43043 * 22 20 19
24 24 H 1.08991 * 109.47533 * 300.00543 * 1 2 3
25 25 H 1.08996 * 109.46630 * 60.00579 * 1 2 3
26 26 H 1.08996 * 109.47065 * 179.97438 * 1 2 3
27 27 H 1.09002 * 109.47627 * 59.99544 * 3 2 1
28 28 H 1.09001 * 109.46768 * 299.99254 * 3 2 1
29 29 H 1.08998 * 109.46989 * 307.49583 * 4 3 2
30 30 H 1.08998 * 109.47478 * 187.48994 * 4 3 2
31 31 H 1.09006 * 109.46935 * 30.00028 * 6 5 4
32 32 H 1.08993 * 109.46943 * 150.00113 * 6 5 4
33 33 H 0.97003 * 119.99560 * 180.02562 * 10 9 7
34 34 H 1.07993 * 120.85563 * 359.95417 * 18 17 15
35 35 H 1.08000 * 120.35705 * 180.02562 * 19 18 17
36 36 H 1.08001 * 119.71382 * 180.31039 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1847 0.0006
5 7 3.9810 0.6188 -1.2752
6 6 3.9402 -0.8301 -1.4880
7 6 5.2471 -1.4392 -1.0498
8 1 6.0296 -0.8102 -0.6521
9 6 5.4432 -2.7998 -1.1555
10 7 4.4900 -3.5660 -1.6394
11 14 7.0634 -3.5549 -0.6130
12 1 6.9793 -3.9293 0.8215
13 1 7.3416 -4.7665 -1.4254
14 1 8.1574 -2.5690 -0.8039
15 6 4.4285 1.4312 -2.2531
16 8 4.6933 0.9752 -3.3484
17 6 4.5975 2.8764 -1.9937
18 6 3.6092 3.5975 -1.3116
19 6 3.8155 4.9473 -1.0936
20 6 4.9812 5.5377 -1.5527
21 35 5.2681 7.3834 -1.2581
22 7 5.8927 4.8336 -2.1980
23 6 5.7438 3.5449 -2.4245
24 1 -0.3634 0.5139 0.8898
25 1 -0.3632 0.5137 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 1.6886 1.8465 0.8899
28 1 1.6887 1.8462 -0.8901
29 1 3.8480 0.5326 0.8162
30 1 3.9781 2.1717 0.1346
31 1 3.1254 -1.2601 -0.9053
32 1 3.7792 -1.0375 -2.5458
33 1 4.6280 -4.5233 -1.7134
34 1 2.7091 3.1119 -0.9651
35 1 3.0754 5.5351 -0.5709
36 1 6.5141 3.0015 -2.9516
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000091448582.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:58
Heat of formation + Delta-G solvation = -48.388635 kcal
Electronic energy + Delta-G solvation = -21900.112322 eV
Core-core repulsion = 18430.689397 eV
Total energy + Delta-G solvation = -3469.422925 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 342.037 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.96071 -40.18903 -38.81708 -36.69671 -35.04774 -33.89988 -33.53425 -31.23035
-31.04057 -29.05858 -27.14218 -25.89478 -24.80150 -24.30671 -23.82733 -20.68933
-18.70877 -18.53121 -18.32968 -17.93898 -17.08142 -16.99004 -16.72061 -16.27319
-16.09074 -15.51489 -15.47047 -15.18908 -14.73468 -14.42486 -14.18120 -13.58384
-13.36999 -13.21755 -13.06983 -12.96569 -12.73707 -12.55063 -12.19863 -12.13794
-11.97106 -11.70467 -11.59098 -11.23606 -11.03679 -10.65618 -10.61173 -10.50382
-10.13661 -9.51687 -8.19508 -6.33687 -0.62682 -0.06567 0.15817 1.37361
1.40193 1.49766 1.61814 2.10411 2.41248 2.45772 2.89901 3.10995
3.17982 3.37475 3.58723 3.73558 3.84882 4.09431 4.16828 4.27895
4.44140 4.46039 4.55127 4.59915 4.63148 4.77960 4.90274 4.92570
5.13339 5.24683 5.30912 5.52691 5.83133 6.08730 6.32880 6.40230
6.63651 6.75317 7.17238 7.37735 8.87921
Molecular weight = 342.04amu
Principal moments of inertia in cm(-1)
A = 0.014580 B = 0.003309 C = 0.002864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1920.024974 B = 8459.852223 C = 9774.867419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.413 6.413
3 C 0.039 3.961
4 C 0.092 3.908
5 N -0.581 5.581
6 C 0.266 3.734
7 C -0.547 4.547
8 H 0.053 0.947
9 C 0.010 3.990
10 N -0.925 5.925
11 Si 0.965 3.035
12 H -0.264 1.264
13 H -0.281 1.281
14 H -0.273 1.273
15 C 0.544 3.456
16 O -0.584 6.584
17 C -0.163 4.163
18 C -0.043 4.043
19 C -0.122 4.122
20 C 0.121 3.879
21 Br 0.013 6.987
22 N -0.477 5.477
23 C 0.149 3.851
24 H 0.066 0.934
25 H 0.045 0.955
26 H 0.078 0.922
27 H 0.105 0.895
28 H 0.059 0.941
29 H 0.081 0.919
30 H 0.120 0.880
31 H 0.044 0.956
32 H -0.006 1.006
33 H 0.266 0.734
34 H 0.178 0.822
35 H 0.195 0.805
36 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.736 23.446 7.616 25.556
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.333 6.333
3 C -0.038 4.038
4 C -0.030 4.030
5 N -0.310 5.310
6 C 0.146 3.854
7 C -0.585 4.585
8 H 0.071 0.929
9 C -0.189 4.189
10 N -0.565 5.565
11 Si 0.789 3.211
12 H -0.189 1.189
13 H -0.207 1.207
14 H -0.197 1.197
15 C 0.331 3.669
16 O -0.465 6.465
17 C -0.169 4.169
18 C -0.070 4.070
19 C -0.143 4.143
20 C -0.096 4.096
21 Br 0.098 6.902
22 N -0.187 5.187
23 C -0.010 4.010
24 H 0.085 0.915
25 H 0.064 0.936
26 H 0.097 0.903
27 H 0.123 0.877
28 H 0.077 0.923
29 H 0.099 0.901
30 H 0.138 0.862
31 H 0.062 0.938
32 H 0.012 0.988
33 H 0.075 0.925
34 H 0.195 0.805
35 H 0.213 0.787
36 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -5.686 23.947 6.849 25.547
hybrid contribution -0.005 -1.702 -0.084 1.704
sum -5.691 22.245 6.764 23.937
Atomic orbital electron populations
1.22878 0.79874 1.03145 1.01029 1.88080 1.21267 1.28413 1.95512
1.23317 0.92716 0.85487 1.02282 1.22158 0.93954 1.01048 0.85883
1.48099 1.60524 1.08137 1.14260 1.18832 0.96567 0.74643 0.95380
1.21730 1.01109 0.93007 1.42665 0.92901 1.25806 1.00496 0.97513
0.95075 1.70070 1.34746 1.05535 1.46143 0.85457 0.79164 0.77734
0.78696 1.18939 1.20661 1.19737 1.18571 0.77741 0.86289 0.84271
1.90754 1.52928 1.77532 1.25315 1.21042 0.98884 0.94048 1.02927
1.22479 0.98536 0.93807 0.92135 1.22330 0.97236 0.94631 1.00144
1.23484 0.93555 0.94410 0.98189 1.96816 1.97367 1.01588 1.94458
1.67543 1.30556 1.07207 1.13411 1.22809 0.95591 0.88804 0.93790
0.91516 0.93640 0.90300 0.87708 0.92318 0.90083 0.86213 0.93823
0.98832 0.92496 0.80534 0.78743 0.81947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.60 11.01 113.37 1.25 1.85 16
2 O -0.41 -13.10 8.93 -148.98 -1.33 -14.43 16
3 C 0.04 0.90 5.23 71.98 0.38 1.28 16
4 C 0.09 2.70 5.34 86.38 0.46 3.16 16
5 N -0.58 -24.40 2.46 -829.59 -2.04 -26.45 16
6 C 0.27 14.49 5.07 85.63 0.43 14.92 16
7 C -0.55 -31.72 9.39 25.60 0.24 -31.48 16
8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16
9 C 0.01 0.60 5.46 84.65 0.46 1.06 16
10 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16
11 Si 0.97 45.27 29.54 68.60 2.03 47.30 16
12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16
13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
14 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16
15 C 0.54 22.82 7.30 86.77 0.63 23.46 16
16 O -0.58 -30.61 16.54 -3.90 -0.06 -30.67 16
17 C -0.16 -4.97 5.13 -19.99 -0.10 -5.08 16
18 C -0.04 -0.88 7.52 22.72 0.17 -0.71 16
19 C -0.12 -1.97 9.81 22.34 0.22 -1.75 16
20 C 0.12 2.59 7.17 84.73 0.61 3.20 16
21 Br 0.01 0.23 33.86 -20.37 -0.69 -0.46 16
22 N -0.48 -13.13 10.31 -189.65 -1.95 -15.09 16
23 C 0.15 4.54 10.86 85.02 0.92 5.46 16
24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16
26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
27 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16
28 H 0.06 1.23 6.41 -2.39 -0.02 1.21 16
29 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16
30 H 0.12 2.67 4.96 -2.39 -0.01 2.66 16
31 H 0.04 2.46 6.45 -2.38 -0.02 2.44 16
32 H -0.01 -0.41 7.35 -2.39 -0.02 -0.43 16
33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
34 H 0.18 2.81 3.79 -2.91 -0.01 2.80 16
35 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16
36 H 0.16 5.15 8.06 -2.91 -0.02 5.13 16
Total: -1.00 -78.31 327.42 3.02 -75.30
By element:
Atomic # 1 Polarization: 4.26 SS G_CDS: 1.11 Total: 5.37 kcal
Atomic # 6 Polarization: 9.70 SS G_CDS: 5.67 Total: 15.37 kcal
Atomic # 7 Polarization: -94.07 SS G_CDS: -3.71 Total: -97.78 kcal
Atomic # 8 Polarization: -43.71 SS G_CDS: -1.39 Total: -45.10 kcal
Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal
Atomic # 35 Polarization: 0.23 SS G_CDS: -0.69 Total: -0.46 kcal
Total: -78.31 3.02 -75.30 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000091448582.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.908 kcal
(2) G-P(sol) polarization free energy of solvation -78.313 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.405 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds