Wall clock time and date at job start Sat Apr 11 2020 06:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45210 * 1
3 3 C 1.34229 * 116.99711 * 2 1
4 4 O 1.20823 * 120.00310 * 359.97438 * 3 2 1
5 5 C 1.50695 * 119.99469 * 179.97438 * 3 2 1
6 6 N 1.46507 * 109.47136 * 179.97438 * 5 3 2
7 7 C 1.33319 * 120.00713 * 264.19783 * 6 5 3
8 8 H 1.07995 * 120.00526 * 203.15078 * 7 6 5
9 9 C 1.46791 * 119.99418 * 23.14153 * 7 6 5
10 10 N 1.29311 * 120.00345 * 6.68995 * 9 7 6
11 11 Si 1.86799 * 119.99659 * 186.67764 * 9 7 6
12 12 H 1.48496 * 109.47550 * 0.02562 * 11 9 7
13 13 H 1.48503 * 109.46946 * 120.00848 * 11 9 7
14 14 H 1.48495 * 109.47264 * 240.00318 * 11 9 7
15 15 C 1.34781 * 119.99466 * 84.19520 * 6 5 3
16 16 O 1.21481 * 120.00173 * 5.45937 * 15 6 5
17 17 C 1.47617 * 119.99878 * 185.45918 * 15 6 5
18 18 C 1.39722 * 120.16161 * 43.67724 * 17 15 6
19 19 C 1.37864 * 119.85395 * 179.74513 * 18 17 15
20 20 N 1.48021 * 119.90190 * 180.25679 * 19 18 17
21 21 O 1.31702 * 119.99737 * 180.25418 * 20 19 18
22 22 O 1.31695 * 120.00153 * 0.24730 * 20 19 18
23 23 C 1.38445 * 120.19355 * 0.50402 * 19 18 17
24 24 C 1.38291 * 120.33460 * 359.77400 * 23 19 18
25 25 C 1.38130 * 120.13667 * 359.96884 * 24 23 19
26 26 Cl 1.73602 * 120.09688 * 179.97438 * 25 24 23
27 27 H 1.08996 * 109.47152 * 300.00212 * 1 2 3
28 28 H 1.08998 * 109.46800 * 60.00307 * 1 2 3
29 29 H 1.08994 * 109.46763 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47806 * 60.00165 * 5 3 2
31 31 H 1.08999 * 109.47732 * 299.99577 * 5 3 2
32 32 H 0.96995 * 120.00250 * 179.97438 * 10 9 7
33 33 H 1.07999 * 120.06989 * 359.97438 * 18 17 15
34 34 H 1.07998 * 119.83466 * 179.74245 * 23 19 18
35 35 H 1.08001 * 119.93180 * 179.97438 * 24 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 7 3.9818 2.6798 -0.0002
7 6 4.2832 3.2853 -1.1490
8 1 4.9254 4.1535 -1.1496
9 6 3.7424 2.7716 -2.4133
10 7 2.8729 1.8145 -2.4032
11 14 4.3100 3.5007 -4.0367
12 1 5.3021 4.5747 -3.7771
13 1 4.9361 2.4385 -4.8644
14 1 3.1435 4.0681 -4.7593
15 6 4.0591 3.3601 1.1608
16 8 3.8813 2.7841 2.2154
17 6 4.3600 4.8053 1.1506
18 6 3.7323 5.6466 0.2284
19 6 4.0141 6.9961 0.2280
20 7 3.3455 7.8893 -0.7447
21 8 3.6170 9.1780 -0.7501
22 8 2.4793 7.3952 -1.6049
23 6 4.9244 7.5176 1.1315
24 6 5.5545 6.6913 2.0439
25 6 5.2785 5.3379 2.0599
26 17 6.0707 4.3014 3.2053
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 3.9565 0.7806 -0.8891
31 1 3.9558 0.7810 0.8908
32 1 2.5152 1.4754 -3.2386
33 1 3.0252 5.2411 -0.4801
34 1 5.1438 8.5750 1.1233
35 1 6.2638 7.1049 2.7454
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000150733158.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:05
Heat of formation + Delta-G solvation = -46.843307 kcal
Electronic energy + Delta-G solvation = -28171.549524 eV
Core-core repulsion = 23780.788200 eV
Total energy + Delta-G solvation = -4390.761323 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 342.054 amu
Computer time = 2.28 seconds
Orbital eigenvalues (eV)
-40.37639 -39.52892 -38.59660 -37.65139 -36.33825 -35.63346 -34.90470 -34.14908
-32.36695 -31.52727 -31.40977 -28.65638 -26.49003 -26.30439 -25.11544 -23.42262
-22.25187 -20.66331 -19.79847 -18.80048 -17.86608 -17.20370 -16.79824 -16.65298
-16.46342 -15.81495 -15.68799 -15.43478 -15.34408 -14.75903 -14.69571 -14.08097
-13.60432 -13.33235 -13.17030 -12.76935 -12.61787 -12.38549 -12.12412 -11.81925
-11.60158 -11.48855 -11.44791 -11.13461 -11.10355 -10.88399 -10.86581 -10.78003
-10.62566 -10.41434 -10.00120 -9.86710 -9.33352 -9.23223 -9.06708 -8.84909
-8.45912 -7.01872 -4.19219 -0.50564 0.86843 1.17512 1.35113 2.12547
2.82510 2.98794 3.03351 3.05916 3.42055 3.51030 3.72240 3.84393
4.15098 4.44576 4.54774 4.72455 4.90901 4.99783 5.35209 5.55512
5.58310 5.66280 5.74516 5.79629 5.83462 5.95082 6.06252 6.09707
6.22998 6.39776 6.45817 6.76750 7.03421 7.07893 7.31192 7.84874
8.42092 8.86887 9.01134 9.46945 10.00113
Molecular weight = 342.05amu
Principal moments of inertia in cm(-1)
A = 0.009204 B = 0.005764 C = 0.004376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3041.286920 B = 4856.693997 C = 6397.277050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.044 3.956
2 O -0.372 6.372
3 C 0.487 3.513
4 O -0.503 6.503
5 C 0.147 3.853
6 N -0.383 5.383
7 C -0.374 4.374
8 H 0.106 0.894
9 C 0.059 3.941
10 N -0.821 5.821
11 Si 0.929 3.071
12 H -0.261 1.261
13 H -0.273 1.273
14 H -0.269 1.269
15 C 0.478 3.522
16 O -0.580 6.580
17 C -0.068 4.068
18 C 0.017 3.983
19 C -0.020 4.020
20 N -0.011 5.011
21 O -0.191 6.191
22 O -0.165 6.165
23 C -0.053 4.053
24 C -0.119 4.119
25 C 0.028 3.972
26 Cl -0.026 7.026
27 H 0.051 0.949
28 H 0.056 0.944
29 H 0.087 0.913
30 H 0.130 0.870
31 H 0.089 0.911
32 H 0.289 0.711
33 H 0.180 0.820
34 H 0.158 0.842
35 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.987 1.152 3.726 5.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 O -0.289 6.289
3 C 0.329 3.671
4 O -0.388 6.388
5 C 0.022 3.978
6 N -0.096 5.096
7 C -0.502 4.502
8 H 0.124 0.876
9 C -0.158 4.158
10 N -0.453 5.453
11 Si 0.753 3.247
12 H -0.185 1.185
13 H -0.198 1.198
14 H -0.194 1.194
15 C 0.268 3.732
16 O -0.467 6.467
17 C -0.073 4.073
18 C -0.003 4.003
19 C -0.107 4.107
20 N 0.465 4.535
21 O -0.381 6.381
22 O -0.359 6.359
23 C -0.073 4.073
24 C -0.138 4.138
25 C -0.001 4.001
26 Cl 0.003 6.997
27 H 0.070 0.930
28 H 0.075 0.925
29 H 0.106 0.894
30 H 0.148 0.852
31 H 0.107 0.893
32 H 0.102 0.898
33 H 0.198 0.802
34 H 0.175 0.825
35 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 3.890 0.529 4.588 6.038
hybrid contribution -0.300 0.633 -1.299 1.476
sum 3.590 1.161 3.289 5.005
Atomic orbital electron populations
1.22971 0.78315 1.02037 1.01777 1.86445 1.21914 1.35040 1.85520
1.23724 0.92058 0.80730 0.70594 1.90538 1.66548 1.36375 1.45346
1.20630 0.87664 0.85008 1.04488 1.42135 1.53548 1.07995 1.05963
1.20584 1.31172 1.15573 0.82832 0.87615 1.26907 0.93214 0.95071
1.00566 1.68676 1.22654 1.23427 1.30508 0.85792 0.79584 0.79513
0.79763 1.18511 1.19797 1.19442 1.17381 0.86327 0.84837 0.84638
1.90674 1.57321 1.68265 1.30421 1.19884 0.96413 0.96568 0.94485
1.21609 0.95542 0.88819 0.94361 1.20276 1.03840 0.89883 0.96723
1.50392 0.99440 1.02915 1.00720 1.96217 1.69732 0.92883 1.79231
1.96322 1.27157 1.79490 1.32976 1.20916 0.92882 1.01819 0.91734
1.20868 1.01977 0.90703 1.00296 1.21370 0.94027 0.91794 0.92930
1.98406 1.77408 1.66749 1.57111 0.92994 0.92513 0.89411 0.85206
0.89276 0.89848 0.80229 0.82478 0.82752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 47.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.70 10.56 101.05 1.07 1.76 16
2 O -0.37 -7.37 10.57 -39.25 -0.41 -7.79 16
3 C 0.49 11.05 6.00 36.00 0.22 11.27 16
4 O -0.50 -12.85 15.77 -18.75 -0.30 -13.15 16
5 C 0.15 3.19 5.17 -5.19 -0.03 3.16 16
6 N -0.38 -8.73 2.08 -115.69 -0.24 -8.97 16
7 C -0.37 -8.43 7.59 -13.45 -0.10 -8.53 16
8 H 0.11 2.33 6.21 -52.49 -0.33 2.00 16
9 C 0.06 1.30 5.33 -15.16 -0.08 1.22 16
10 N -0.82 -18.58 8.83 56.00 0.49 -18.09 16
11 Si 0.93 17.93 29.65 -169.99 -5.04 12.89 16
12 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16
13 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16
14 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16
15 C 0.48 10.80 6.62 -12.43 -0.08 10.71 16
16 O -0.58 -14.06 15.18 5.38 0.08 -13.98 16
17 C -0.07 -1.34 4.99 -104.94 -0.52 -1.87 16
18 C 0.02 0.32 7.34 -39.16 -0.29 0.03 16
19 C -0.02 -0.35 6.88 -80.01 -0.55 -0.90 16
20 N -0.01 -0.21 4.98 33.93 0.17 -0.04 16
21 O -0.19 -3.49 19.14 -31.57 -0.60 -4.10 16
22 O -0.16 -3.44 19.14 -31.56 -0.60 -4.04 16
23 C -0.05 -0.73 9.57 -39.49 -0.38 -1.10 16
24 C -0.12 -1.53 9.82 -39.60 -0.39 -1.92 16
25 C 0.03 0.47 6.34 -39.04 -0.25 0.22 16
26 Cl -0.03 -0.42 26.98 -51.86 -1.40 -1.82 16
27 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16
28 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16
29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16
30 H 0.13 2.75 6.38 -51.93 -0.33 2.42 16
31 H 0.09 1.82 7.53 -51.93 -0.39 1.43 16
32 H 0.29 6.16 8.26 -40.82 -0.34 5.82 16
33 H 0.18 3.89 6.43 -52.49 -0.34 3.55 16
34 H 0.16 1.73 7.56 -52.49 -0.40 1.34 16
35 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16
LS Contribution 334.70 15.07 5.04 5.04
Total: -1.00 -28.44 334.70 -6.80 -35.24
By element:
Atomic # 1 Polarization: 7.35 SS G_CDS: -2.61 Total: 4.75 kcal
Atomic # 6 Polarization: 15.44 SS G_CDS: -1.39 Total: 14.05 kcal
Atomic # 7 Polarization: -27.53 SS G_CDS: 0.42 Total: -27.10 kcal
Atomic # 8 Polarization: -41.21 SS G_CDS: -1.84 Total: -43.05 kcal
Atomic # 14 Polarization: 17.93 SS G_CDS: -5.04 Total: 12.89 kcal
Atomic # 17 Polarization: -0.42 SS G_CDS: -1.40 Total: -1.82 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -28.44 -6.80 -35.24 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000150733158.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.599 kcal
(2) G-P(sol) polarization free energy of solvation -28.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.28 seconds