Wall clock time and date at job start Sat Apr 11 2020 06:30:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45210 * 1
3 3 C 1.34229 * 116.99711 * 2 1
4 4 O 1.20823 * 120.00310 * 359.97438 * 3 2 1
5 5 C 1.50695 * 119.99469 * 179.97438 * 3 2 1
6 6 N 1.46507 * 109.47136 * 179.97438 * 5 3 2
7 7 C 1.33319 * 120.00713 * 264.19783 * 6 5 3
8 8 H 1.07995 * 120.00526 * 203.15078 * 7 6 5
9 9 C 1.46791 * 119.99418 * 23.14153 * 7 6 5
10 10 N 1.29311 * 120.00345 * 6.68995 * 9 7 6
11 11 Si 1.86799 * 119.99659 * 186.67764 * 9 7 6
12 12 H 1.48496 * 109.47550 * 0.02562 * 11 9 7
13 13 H 1.48503 * 109.46946 * 120.00848 * 11 9 7
14 14 H 1.48495 * 109.47264 * 240.00318 * 11 9 7
15 15 C 1.34781 * 119.99466 * 84.19520 * 6 5 3
16 16 O 1.21481 * 120.00173 * 5.45937 * 15 6 5
17 17 C 1.47617 * 119.99878 * 185.45918 * 15 6 5
18 18 C 1.39722 * 120.16161 * 43.67724 * 17 15 6
19 19 C 1.37864 * 119.85395 * 179.74513 * 18 17 15
20 20 N 1.48021 * 119.90190 * 180.25679 * 19 18 17
21 21 O 1.31702 * 119.99737 * 180.25418 * 20 19 18
22 22 O 1.31695 * 120.00153 * 0.24730 * 20 19 18
23 23 C 1.38445 * 120.19355 * 0.50402 * 19 18 17
24 24 C 1.38291 * 120.33460 * 359.77400 * 23 19 18
25 25 C 1.38130 * 120.13667 * 359.96884 * 24 23 19
26 26 Cl 1.73602 * 120.09688 * 179.97438 * 25 24 23
27 27 H 1.08996 * 109.47152 * 300.00212 * 1 2 3
28 28 H 1.08998 * 109.46800 * 60.00307 * 1 2 3
29 29 H 1.08994 * 109.46763 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47806 * 60.00165 * 5 3 2
31 31 H 1.08999 * 109.47732 * 299.99577 * 5 3 2
32 32 H 0.96995 * 120.00250 * 179.97438 * 10 9 7
33 33 H 1.07999 * 120.06989 * 359.97438 * 18 17 15
34 34 H 1.07998 * 119.83466 * 179.74245 * 23 19 18
35 35 H 1.08001 * 119.93180 * 179.97438 * 24 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 7 3.9818 2.6798 -0.0002
7 6 4.2832 3.2853 -1.1490
8 1 4.9254 4.1535 -1.1496
9 6 3.7424 2.7716 -2.4133
10 7 2.8729 1.8145 -2.4032
11 14 4.3100 3.5007 -4.0367
12 1 5.3021 4.5747 -3.7771
13 1 4.9361 2.4385 -4.8644
14 1 3.1435 4.0681 -4.7593
15 6 4.0591 3.3601 1.1608
16 8 3.8813 2.7841 2.2154
17 6 4.3600 4.8053 1.1506
18 6 3.7323 5.6466 0.2284
19 6 4.0141 6.9961 0.2280
20 7 3.3455 7.8893 -0.7447
21 8 3.6170 9.1780 -0.7501
22 8 2.4793 7.3952 -1.6049
23 6 4.9244 7.5176 1.1315
24 6 5.5545 6.6913 2.0439
25 6 5.2785 5.3379 2.0599
26 17 6.0707 4.3014 3.2053
27 1 -0.3633 0.5138 0.8899
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 3.9565 0.7806 -0.8891
31 1 3.9558 0.7810 0.8908
32 1 2.5152 1.4754 -3.2386
33 1 3.0252 5.2411 -0.4801
34 1 5.1438 8.5750 1.1233
35 1 6.2638 7.1049 2.7454
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000150733158.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:04
Heat of formation + Delta-G solvation = -62.305296 kcal
Electronic energy + Delta-G solvation = -28172.220006 eV
Core-core repulsion = 23780.788200 eV
Total energy + Delta-G solvation = -4391.431806 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 342.054 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.89904 -41.15200 -40.20616 -39.14088 -37.67642 -37.33353 -36.65006 -35.65603
-34.04041 -32.96288 -32.76929 -30.25497 -27.93270 -27.77898 -26.75685 -24.87267
-23.63621 -22.28882 -21.45358 -20.36710 -19.32317 -18.81110 -18.48373 -18.10790
-17.95194 -17.43294 -17.20111 -17.02225 -16.80475 -16.36890 -16.32467 -15.39058
-15.14244 -14.80325 -14.66060 -14.31270 -14.05606 -13.90194 -13.68938 -13.31279
-13.10144 -13.01215 -12.88316 -12.73318 -12.63095 -12.51677 -12.34821 -12.19445
-12.10848 -11.95110 -11.62667 -11.58754 -11.07428 -10.75360 -10.45762 -10.35582
-10.17140 -8.67533 -5.94681 -1.94185 -0.49106 -0.16381 -0.08397 0.79973
1.26277 1.38766 1.47760 1.55063 1.69815 1.98937 2.12959 2.25849
2.59422 2.87130 3.24957 3.33627 3.53562 3.66524 3.99166 4.18083
4.24062 4.32993 4.38684 4.45087 4.47478 4.55873 4.59079 4.66887
4.69238 4.78246 5.08340 5.13712 5.39639 5.52955 5.62714 6.15520
6.73801 7.13351 7.31635 7.77710 8.35968
Molecular weight = 342.05amu
Principal moments of inertia in cm(-1)
A = 0.009204 B = 0.005764 C = 0.004376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3041.286920 B = 4856.693997 C = 6397.277050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.372 6.372
3 C 0.489 3.511
4 O -0.541 6.541
5 C 0.146 3.854
6 N -0.393 5.393
7 C -0.395 4.395
8 H 0.104 0.896
9 C 0.028 3.972
10 N -0.847 5.847
11 Si 0.981 3.019
12 H -0.263 1.263
13 H -0.258 1.258
14 H -0.284 1.284
15 C 0.471 3.529
16 O -0.606 6.606
17 C -0.098 4.098
18 C 0.003 3.997
19 C -0.028 4.028
20 N -0.011 5.011
21 O -0.124 6.124
22 O -0.251 6.251
23 C -0.016 4.016
24 C -0.094 4.094
25 C 0.038 3.962
26 Cl -0.019 7.019
27 H 0.050 0.950
28 H 0.046 0.954
29 H 0.135 0.865
30 H 0.131 0.869
31 H 0.097 0.903
32 H 0.289 0.711
33 H 0.143 0.857
34 H 0.204 0.796
35 H 0.211 0.789
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.139 3.598 5.242 8.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.289 6.289
3 C 0.332 3.668
4 O -0.429 6.429
5 C 0.021 3.979
6 N -0.107 5.107
7 C -0.523 4.523
8 H 0.122 0.878
9 C -0.185 4.185
10 N -0.479 5.479
11 Si 0.804 3.196
12 H -0.187 1.187
13 H -0.182 1.182
14 H -0.210 1.210
15 C 0.262 3.738
16 O -0.495 6.495
17 C -0.103 4.103
18 C -0.017 4.017
19 C -0.115 4.115
20 N 0.466 4.534
21 O -0.335 6.335
22 O -0.424 6.424
23 C -0.036 4.036
24 C -0.113 4.113
25 C 0.009 3.991
26 Cl 0.011 6.989
27 H 0.069 0.931
28 H 0.065 0.935
29 H 0.153 0.847
30 H 0.149 0.851
31 H 0.114 0.886
32 H 0.102 0.898
33 H 0.161 0.839
34 H 0.221 0.779
35 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges 5.935 2.763 6.007 8.885
hybrid contribution -0.846 0.194 -1.482 1.717
sum 5.090 2.957 4.525 7.425
Atomic orbital electron populations
1.23309 0.76059 1.04943 1.01232 1.86420 1.24117 1.33476 1.84889
1.23916 0.92458 0.80865 0.69518 1.90510 1.67404 1.37709 1.47302
1.20670 0.87351 0.85159 1.04699 1.42236 1.53904 1.08298 1.06225
1.20578 1.32081 1.16509 0.83090 0.87838 1.27486 0.93248 0.95326
1.02473 1.68716 1.23823 1.24580 1.30823 0.85047 0.78466 0.79031
0.77092 1.18701 1.18246 1.21001 1.17880 0.85613 0.86141 0.84199
1.90622 1.58401 1.69362 1.31084 1.19691 0.98973 0.94956 0.96657
1.21164 0.95781 0.90166 0.94598 1.20488 1.04717 0.89033 0.97262
1.50596 0.99185 1.02949 1.00697 1.96161 1.67029 0.93160 1.77197
1.96376 1.30571 1.79717 1.35769 1.21544 0.89314 1.03924 0.88800
1.21464 1.01376 0.88466 1.00008 1.21695 0.92675 0.93417 0.91309
1.98419 1.76907 1.67132 1.56487 0.93139 0.93524 0.84730 0.85141
0.88553 0.89849 0.83912 0.77941 0.77253
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.23 10.56 113.37 1.20 2.42 16
2 O -0.37 -15.15 10.57 -51.41 -0.54 -15.69 16
3 C 0.49 23.27 6.00 71.23 0.43 23.70 16
4 O -0.54 -29.29 15.77 21.97 0.35 -28.95 16
5 C 0.15 6.67 5.17 85.63 0.44 7.11 16
6 N -0.39 -18.85 2.08 -638.24 -1.33 -20.17 16
7 C -0.39 -18.77 7.59 86.71 0.66 -18.12 16
8 H 0.10 4.81 6.21 -2.91 -0.02 4.79 16
9 C 0.03 1.28 5.33 87.30 0.47 1.75 16
10 N -0.85 -40.41 8.83 23.26 0.21 -40.20 16
11 Si 0.98 38.36 29.65 68.60 2.03 40.39 16
12 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16
13 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16
14 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16
15 C 0.47 22.01 6.62 86.72 0.57 22.58 16
16 O -0.61 -30.17 15.18 -3.66 -0.06 -30.23 16
17 C -0.10 -3.86 4.99 -20.07 -0.10 -3.96 16
18 C 0.00 0.14 7.34 22.54 0.17 0.30 16
19 C -0.03 -0.92 6.88 36.34 0.25 -0.67 16
20 N -0.01 -0.40 4.98 -46.55 -0.23 -0.63 16
21 O -0.12 -4.00 19.14 3.51 0.07 -3.93 16
22 O -0.25 -11.00 19.14 3.52 0.07 -10.93 16
23 C -0.02 -0.35 9.57 22.33 0.21 -0.14 16
24 C -0.09 -1.89 9.82 22.26 0.22 -1.67 16
25 C 0.04 1.15 6.34 22.62 0.14 1.30 16
26 Cl -0.02 -0.57 26.98 -2.72 -0.07 -0.64 16
27 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16
28 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16
29 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16
30 H 0.13 5.85 6.38 -2.39 -0.02 5.83 16
31 H 0.10 4.13 7.53 -2.39 -0.02 4.11 16
32 H 0.29 12.98 8.26 -92.71 -0.77 12.22 16
33 H 0.14 6.75 6.43 -2.91 -0.02 6.74 16
34 H 0.20 2.75 7.56 -2.91 -0.02 2.73 16
35 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16
Total: -1.00 -67.18 334.70 6.32 -60.85
By element:
Atomic # 1 Polarization: 14.36 SS G_CDS: 1.18 Total: 15.55 kcal
Atomic # 6 Polarization: 29.94 SS G_CDS: 4.66 Total: 34.60 kcal
Atomic # 7 Polarization: -59.66 SS G_CDS: -1.35 Total: -61.01 kcal
Atomic # 8 Polarization: -89.61 SS G_CDS: -0.12 Total: -89.73 kcal
Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal
Atomic # 17 Polarization: -0.57 SS G_CDS: -0.07 Total: -0.64 kcal
Total: -67.18 6.32 -60.85 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000150733158.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.454 kcal
(2) G-P(sol) polarization free energy of solvation -67.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.630 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds