Wall clock time and date at job start Sat Apr 11 2020 06:28:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86808 * 120.00004 * 2 1
4 4 H 1.48507 * 109.46863 * 270.00122 * 3 2 1
5 5 H 1.48503 * 109.47027 * 29.99583 * 3 2 1
6 6 H 1.48493 * 109.47012 * 149.99859 * 3 2 1
7 7 C 1.37877 * 120.00219 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99499 * 0.02562 * 7 2 1
9 9 C 1.50697 * 120.00040 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.47071 * 180.02562 * 9 7 2
11 11 C 1.53005 * 109.46994 * 180.02562 * 10 9 7
12 12 N 1.46502 * 109.46811 * 179.97438 * 11 10 9
13 13 S 1.65600 * 119.99813 * 164.99643 * 12 11 10
14 14 O 1.42093 * 106.40487 * 311.46059 * 13 12 11
15 15 O 1.42102 * 106.40228 * 178.53707 * 13 12 11
16 16 C 1.76199 * 107.21715 * 65.00067 * 13 12 11
17 17 C 1.33619 * 125.10105 * 89.72040 * 16 13 12
18 18 C 1.37931 * 115.09182 * 179.79246 * 17 16 13
19 19 C 1.35058 * 114.65174 * 0.49714 * 18 17 16
20 20 C 1.47209 * 125.28618 * 179.73677 * 19 18 17
21 21 C 1.36066 * 126.61076 * 179.97438 * 20 19 18
22 22 N 1.34123 * 107.49369 * 179.97438 * 21 20 19
23 23 C 1.30346 * 108.94162 * 359.97438 * 22 21 20
24 24 O 1.34102 * 109.08332 * 359.75807 * 23 22 21
25 25 S 1.75854 * 125.10195 * 270.02515 * 16 13 12
26 26 H 0.97004 * 120.00096 * 0.02562 * 1 2 3
27 27 H 1.08996 * 109.47522 * 60.00024 * 9 7 2
28 28 H 1.09001 * 109.46964 * 300.00187 * 9 7 2
29 29 H 1.08999 * 109.47496 * 59.99935 * 10 9 7
30 30 H 1.09001 * 109.47095 * 299.99759 * 10 9 7
31 31 H 1.08999 * 109.47179 * 59.99585 * 11 10 9
32 32 H 1.08993 * 109.47007 * 299.99482 * 11 10 9
33 33 H 0.97005 * 120.00395 * 344.99918 * 12 11 10
34 34 H 1.08002 * 122.45194 * 359.97438 * 17 16 13
35 35 H 1.08005 * 122.67330 * 180.23532 * 18 17 16
36 36 H 1.08005 * 126.25056 * 359.95097 * 21 20 19
37 37 H 1.08007 * 125.45761 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4002
5 1 1.4465 2.6528 0.7000
6 1 3.5466 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5115 -1.1940 0.0011
10 6 4.0215 -2.6364 0.0010
11 6 5.5516 -2.6364 0.0022
12 7 6.0399 -4.0176 0.0027
13 16 7.6222 -4.3365 -0.3672
14 8 7.9076 -3.6198 -1.5605
15 8 7.7869 -5.7428 -0.2470
16 6 8.6103 -3.6099 0.8979
17 6 8.9839 -4.2199 2.0265
18 6 9.7619 -3.4581 2.8732
19 6 10.0160 -2.2072 2.4319
20 6 10.8134 -1.1983 3.1483
21 6 11.0865 0.0672 2.7296
22 7 11.8394 0.6506 3.6739
23 6 12.0352 -0.1984 4.6433
24 8 11.4098 -1.3483 4.3520
25 16 9.2463 -1.9707 0.8681
26 1 -0.4850 0.8401 -0.0004
27 1 3.8745 -0.6800 0.8911
28 1 3.8751 -0.6803 -0.8888
29 1 3.6586 -3.1501 -0.8892
30 1 3.6579 -3.1505 0.8908
31 1 5.9142 -2.1228 0.8926
32 1 5.9156 -2.1223 -0.8873
33 1 5.4364 -4.7454 0.2197
34 1 8.7001 -5.2361 2.2574
35 1 10.1344 -3.8307 3.8160
36 1 10.7573 0.5192 1.8056
37 1 12.6058 -0.0051 5.5398
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001260000246.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:56
Heat of formation + Delta-G solvation = -21.909547 kcal
Electronic energy + Delta-G solvation = -23902.928030 eV
Core-core repulsion = 20093.877588 eV
Total energy + Delta-G solvation = -3809.050443 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 342.054 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-43.81504 -38.39387 -37.34413 -36.19751 -36.01713 -35.33644 -33.27390 -32.53967
-31.23247 -28.90515 -26.88354 -25.32478 -23.37048 -22.91002 -22.62395 -20.86186
-20.30161 -19.60651 -18.83338 -17.74432 -17.41633 -17.15697 -16.90104 -16.52911
-15.97554 -15.59987 -14.88761 -14.84825 -14.66032 -14.30334 -14.09756 -13.82308
-13.50424 -12.97752 -12.94050 -12.51365 -12.41424 -12.24889 -12.17137 -11.97341
-11.85754 -11.77140 -11.35836 -11.19296 -11.19000 -10.97646 -10.70446 -10.15888
-9.90055 -9.76224 -9.45943 -9.25824 -9.07209 -8.77913 -8.58343 -6.08663
-4.07592 -0.47793 0.19298 0.71498 1.04958 1.16698 1.94805 2.25435
2.32281 2.90223 3.28251 3.35987 3.37739 3.52901 3.63573 3.97939
4.32412 4.38537 4.41133 4.71092 4.85282 5.02368 5.09800 5.13315
5.25055 5.32164 5.45780 5.49587 5.67316 5.68836 5.75233 5.85737
6.35716 6.50983 6.71851 6.95094 7.06428 7.18575 7.31746 7.72834
8.47900 8.95714 9.53214 11.04659
Molecular weight = 342.05amu
Principal moments of inertia in cm(-1)
A = 0.009489 B = 0.003277 C = 0.002588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2950.017920 B = 8542.837888 C =10818.324195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.067 3.933
3 Si 0.879 3.121
4 H -0.276 1.276
5 H -0.288 1.288
6 H -0.265 1.265
7 C -0.522 4.522
8 H 0.072 0.928
9 C -0.014 4.014
10 C -0.107 4.107
11 C 0.107 3.893
12 N -1.108 6.108
13 S 2.718 3.282
14 O -0.948 6.948
15 O -0.954 6.954
16 C -0.792 4.792
17 C 0.009 3.991
18 C -0.139 4.139
19 C -0.094 4.094
20 C 0.014 3.986
21 C -0.006 4.006
22 N -0.482 5.482
23 C 0.187 3.813
24 O -0.192 6.192
25 S 0.289 5.711
26 H 0.263 0.737
27 H 0.018 0.982
28 H 0.016 0.984
29 H 0.065 0.935
30 H 0.063 0.937
31 H 0.061 0.939
32 H 0.078 0.922
33 H 0.421 0.579
34 H 0.162 0.838
35 H 0.154 0.846
36 H 0.190 0.810
37 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.344 -5.632 8.374 27.280
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.135 4.135
3 Si 0.706 3.294
4 H -0.201 1.201
5 H -0.214 1.214
6 H -0.190 1.190
7 C -0.560 4.560
8 H 0.091 0.909
9 C -0.052 4.052
10 C -0.147 4.147
11 C -0.019 4.019
12 N -0.870 5.870
13 S 2.801 3.199
14 O -0.938 6.938
15 O -0.944 6.944
16 C -0.992 4.992
17 C -0.026 4.026
18 C -0.171 4.171
19 C -0.215 4.215
20 C -0.040 4.040
21 C -0.148 4.148
22 N -0.209 5.209
23 C -0.039 4.039
24 O -0.079 6.079
25 S 0.559 5.441
26 H 0.073 0.927
27 H 0.037 0.963
28 H 0.034 0.966
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.080 0.920
32 H 0.097 0.903
33 H 0.257 0.743
34 H 0.179 0.821
35 H 0.172 0.828
36 H 0.207 0.793
37 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges 25.779 -4.007 6.586 26.907
hybrid contribution 0.092 -0.769 2.014 2.158
sum 25.871 -4.777 8.600 27.678
Atomic orbital electron populations
1.69909 1.06337 1.26970 1.50922 1.25035 0.94738 0.99219 0.94492
0.86791 0.80338 0.83601 0.78636 1.20144 1.21392 1.18957 1.21091
0.89290 0.94547 1.51116 0.90947 1.19557 0.97447 0.91562 0.96658
1.21670 0.89813 1.00896 1.02275 1.21691 0.98963 0.79542 1.01684
1.55461 1.27237 1.16144 1.88168 1.01369 0.72348 0.73071 0.73067
1.93618 1.84187 1.74538 1.41489 1.93595 1.85638 1.28534 1.86676
1.36299 1.28184 1.10969 1.23713 1.19811 0.92325 1.00702 0.89724
1.20593 1.01617 0.92472 1.02453 1.22244 1.03126 0.96057 1.00033
1.20197 1.01979 0.95558 0.86311 1.23527 0.99615 0.90763 1.00861
1.70395 1.16125 1.32260 1.02127 1.28331 0.96807 0.78149 1.00619
1.84535 1.52304 1.39175 1.31880 1.84241 1.43150 1.06339 1.10418
0.92672 0.96336 0.96591 0.91609 0.91848 0.92036 0.90330 0.74314
0.82054 0.82841 0.79273 0.72742
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16
2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16
3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16
4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16
7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16
8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16
9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16
10 C -0.11 -1.89 5.29 -26.73 -0.14 -2.03 16
11 C 0.11 1.50 6.22 -4.04 -0.03 1.48 16
12 N -1.11 -13.20 6.00 -10.61 -0.06 -13.27 16
13 S 2.72 33.66 5.88 -107.50 -0.63 33.03 16
14 O -0.95 -14.32 17.37 -57.17 -0.99 -15.31 16
15 O -0.95 -13.27 17.80 -57.17 -1.02 -14.29 16
16 C -0.79 -8.59 6.54 29.11 0.19 -8.40 16
17 C 0.01 0.08 9.82 -41.31 -0.41 -0.32 16
18 C -0.14 -1.24 10.10 -40.82 -0.41 -1.66 16
19 C -0.09 -0.92 6.42 -37.07 -0.24 -1.16 16
20 C 0.01 0.14 7.18 -36.72 -0.26 -0.13 16
21 C -0.01 -0.05 11.67 -17.33 -0.20 -0.26 16
22 N -0.48 -4.56 11.27 -14.59 -0.16 -4.72 16
23 C 0.19 1.22 13.22 52.13 0.69 1.91 16
24 O -0.19 -1.63 10.80 3.80 0.04 -1.59 16
25 S 0.29 2.96 22.97 -107.50 -2.47 0.49 16
26 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16
27 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16
28 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16
29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.08 1.11 7.75 -51.93 -0.40 0.71 16
33 H 0.42 4.27 8.65 -34.47 -0.30 3.98 16
34 H 0.16 1.17 8.05 -52.49 -0.42 0.74 16
35 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16
36 H 0.19 1.43 8.06 -52.48 -0.42 1.00 16
37 H 0.26 0.29 8.06 -52.48 -0.42 -0.13 16
LS Contribution 354.02 15.07 5.34 5.34
Total: -1.00 -35.88 354.02 -9.22 -45.10
By element:
Atomic # 1 Polarization: 3.28 SS G_CDS: -4.01 Total: -0.73 kcal
Atomic # 6 Polarization: -22.54 SS G_CDS: -1.35 Total: -23.89 kcal
Atomic # 7 Polarization: -45.15 SS G_CDS: 0.55 Total: -44.60 kcal
Atomic # 8 Polarization: -29.22 SS G_CDS: -1.97 Total: -31.19 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal
Atomic # 16 Polarization: 36.62 SS G_CDS: -3.10 Total: 33.52 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -35.88 -9.22 -45.10 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001260000246.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.194 kcal
(2) G-P(sol) polarization free energy of solvation -35.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds