Wall clock time and date at job start Sat Apr 11 2020 06:28:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81395 * 1
3 3 O 1.42095 * 110.54576 * 2 1
4 4 O 1.42102 * 110.54458 * 223.24688 * 2 1 3
5 5 C 1.76205 * 104.44999 * 111.62390 * 2 1 3
6 6 N 1.30633 * 125.44066 * 269.97582 * 5 2 1
7 7 N 1.40430 * 106.97492 * 179.80246 * 6 5 2
8 8 H 0.97001 * 126.83838 * 180.25196 * 7 6 5
9 9 C 1.34976 * 106.32768 * 0.35239 * 7 6 5
10 10 N 1.38602 * 126.06709 * 179.91765 * 9 7 6
11 11 C 1.34776 * 119.99790 * 359.70833 * 10 9 7
12 12 O 1.21765 * 120.00164 * 359.97438 * 11 10 9
13 13 C 1.46145 * 119.99756 * 180.02562 * 11 10 9
14 14 S 1.75664 * 125.22923 * 359.97391 * 13 11 10
15 15 C 1.75470 * 92.09140 * 180.02562 * 14 13 11
16 16 C 1.32757 * 111.37573 * 359.73840 * 15 14 13
17 17 C 1.39602 * 125.23262 * 179.97438 * 13 11 10
18 18 C 1.40500 * 123.71742 * 359.95450 * 17 13 11
19 19 H 1.07999 * 120.00571 * 335.72331 * 18 17 13
20 20 C 1.40321 * 119.99692 * 155.72122 * 18 17 13
21 21 N 1.30633 * 120.00190 * 339.52041 * 20 18 17
22 22 Si 1.86802 * 119.99981 * 159.52605 * 20 18 17
23 23 H 1.48506 * 109.46991 * 180.02562 * 22 20 18
24 24 H 1.48499 * 109.46737 * 299.99592 * 22 20 18
25 25 H 1.48493 * 109.47581 * 59.99698 * 22 20 18
26 26 N 1.31538 * 107.86694 * 359.64719 * 9 7 6
27 27 H 1.08998 * 109.47192 * 308.37572 * 1 2 3
28 28 H 1.09002 * 109.47168 * 68.37777 * 1 2 3
29 29 H 1.09000 * 109.47151 * 188.37591 * 1 2 3
30 30 H 0.96999 * 119.99749 * 179.71302 * 10 9 7
31 31 H 1.08007 * 124.31299 * 179.97438 * 15 14 13
32 32 H 1.08005 * 122.78074 * 180.25543 * 16 15 14
33 33 H 0.97000 * 119.99971 * 353.99846 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9693 -0.9117
5 6 2.2536 -0.6288 1.5862
6 7 2.4431 0.0903 2.6602
7 7 2.7708 -0.7989 3.6965
8 1 2.9656 -0.5706 4.6189
9 6 2.7629 -2.0344 3.1530
10 7 3.0341 -3.2200 3.8178
11 6 3.3464 -3.2013 5.1287
12 8 3.3908 -2.1429 5.7290
13 6 3.6329 -4.4514 5.8295
14 16 3.6093 -6.0498 5.1011
15 6 4.0451 -6.8176 6.6175
16 6 4.1985 -5.9230 7.5863
17 6 3.9673 -4.5589 7.1806
18 6 4.0723 -3.4587 8.0480
19 1 4.2820 -2.4763 7.6513
20 6 3.9047 -3.6362 9.4298
21 7 3.2739 -4.6871 9.8815
22 14 4.5833 -2.3695 10.6233
23 1 4.2769 -2.7868 12.0151
24 1 6.0546 -2.2654 10.4508
25 1 3.9587 -1.0498 10.3527
26 7 2.4465 -1.9141 1.8819
27 1 -0.3633 0.6380 0.8056
28 1 -0.3633 0.3787 -0.9554
29 1 -0.3633 -1.0167 0.1497
30 1 2.9991 -4.0631 3.3394
31 1 4.1758 -7.8821 6.7455
32 1 4.4711 -6.1948 8.5954
33 1 2.8462 -5.2993 9.2626
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001364046553.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:06
Heat of formation + Delta-G solvation = -15.818950 kcal
Electronic energy + Delta-G solvation = -24187.802667 eV
Core-core repulsion = 20275.475989 eV
Total energy + Delta-G solvation = -3912.326678 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 342.029 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.62209 -40.75484 -38.51512 -38.24176 -37.13408 -36.19477 -35.05678 -33.90405
-32.13511 -30.88617 -30.36503 -28.12217 -25.37857 -24.78602 -23.53662 -22.51269
-21.05642 -20.28879 -19.71825 -19.46956 -18.43490 -17.91216 -17.84281 -17.74403
-16.94729 -16.62677 -16.59364 -16.08326 -15.78894 -15.62146 -15.05759 -14.53867
-14.03766 -13.98844 -13.89590 -13.81098 -13.44601 -13.26940 -13.15017 -13.07968
-12.86532 -12.68522 -12.64807 -12.14965 -12.06465 -11.95048 -11.80661 -11.76426
-11.62482 -11.19167 -10.94284 -10.28200 -9.83862 -9.41112 -9.26553 -6.74936
-1.08231 -0.17405 0.10544 0.79168 0.97290 1.10223 1.32388 1.44168
1.49731 1.53485 1.75880 1.79046 1.97380 2.17510 2.21788 2.79147
2.84818 2.96723 3.54807 3.99897 4.09779 4.12275 4.24146 4.30335
4.55178 4.70177 4.86934 4.94086 5.02772 5.18157 5.20638 5.56888
5.70319 5.81662 5.88431 6.28268 6.44751 6.58640 6.97458 7.66554
Molecular weight = 342.03amu
Principal moments of inertia in cm(-1)
A = 0.017420 B = 0.002949 C = 0.002592
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1607.006400 B = 9493.164606 C =10801.170601
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.604 4.604
2 S 2.539 3.461
3 O -0.947 6.947
4 O -0.941 6.941
5 C -0.281 4.281
6 N -0.238 5.238
7 N -0.463 5.463
8 H 0.456 0.544
9 C 0.511 3.489
10 N -0.626 5.626
11 C 0.591 3.409
12 O -0.577 6.577
13 C -0.470 4.470
14 S 0.026 5.974
15 C -0.153 4.153
16 C -0.174 4.174
17 C 0.094 3.906
18 C -0.435 4.435
19 H 0.093 0.907
20 C 0.004 3.996
21 N -0.767 5.767
22 Si 1.116 2.884
23 H -0.259 1.259
24 H -0.258 1.258
25 H -0.265 1.265
26 N -0.513 5.513
27 H 0.154 0.846
28 H 0.179 0.821
29 H 0.156 0.844
30 H 0.435 0.565
31 H 0.187 0.813
32 H 0.134 0.866
33 H 0.296 0.704
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.153 1.781 -9.380 11.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.760 4.760
2 S 2.709 3.291
3 O -0.944 6.944
4 O -0.937 6.937
5 C -0.640 4.640
6 N -0.073 5.073
7 N -0.195 5.195
8 H 0.312 0.688
9 C 0.144 3.856
10 N -0.280 5.280
11 C 0.394 3.606
12 O -0.461 6.461
13 C -0.588 4.588
14 S 0.282 5.718
15 C -0.288 4.288
16 C -0.207 4.207
17 C 0.084 3.916
18 C -0.464 4.464
19 H 0.111 0.889
20 C -0.219 4.219
21 N -0.388 5.388
22 Si 0.932 3.068
23 H -0.183 1.183
24 H -0.182 1.182
25 H -0.190 1.190
26 N -0.252 5.252
27 H 0.173 0.827
28 H 0.197 0.803
29 H 0.174 0.826
30 H 0.276 0.724
31 H 0.204 0.796
32 H 0.151 0.849
33 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -5.674 2.835 -9.467 11.395
hybrid contribution 0.080 -0.820 1.088 1.365
sum -5.594 2.014 -8.379 10.274
Atomic orbital electron populations
1.29919 1.16037 1.14772 1.15310 1.05246 0.81288 0.72731 0.69853
1.93581 1.80443 1.36237 1.84129 1.93575 1.80221 1.62169 1.57763
1.38445 1.10915 0.94524 1.20166 1.77909 1.19505 1.15056 0.94800
1.48754 1.53760 1.03270 1.13723 0.68844 1.20725 0.93889 0.82742
0.88253 1.42706 1.69523 1.05697 1.10081 1.17143 0.75817 0.89025
0.78592 1.90453 1.57222 1.32540 1.65869 1.22298 1.43278 0.93701
0.99544 1.82695 1.78969 0.97704 1.12475 1.25531 1.03930 1.03597
0.95736 1.21455 1.06447 0.92329 1.00428 1.18292 0.89084 0.92931
0.91321 1.21230 1.33767 0.97514 0.93907 0.88930 1.28778 0.93159
1.00218 0.99726 1.70524 1.17732 1.08526 1.42049 0.82983 0.77591
0.72536 0.73711 1.18276 1.18242 1.19012 1.70674 1.27253 1.17889
1.09373 0.82730 0.80302 0.82607 0.72406 0.79557 0.84858 0.88973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.60 -4.99 10.80 113.37 1.22 -3.77 16
2 S 2.54 55.35 5.97 -56.49 -0.34 55.02 16
3 O -0.95 -26.14 17.92 -127.65 -2.29 -28.43 16
4 O -0.94 -26.34 17.93 -127.65 -2.29 -28.63 16
5 C -0.28 -8.84 7.73 180.77 1.40 -7.44 16
6 N -0.24 -8.25 12.75 -59.15 -0.75 -9.00 16
7 N -0.46 -17.46 7.05 -58.74 -0.41 -17.87 16
8 H 0.46 17.52 6.47 -213.11 -1.38 16.14 16
9 C 0.51 19.30 8.83 260.67 2.30 21.61 16
10 N -0.63 -23.59 5.38 -316.69 -1.70 -25.30 16
11 C 0.59 26.15 7.72 86.30 0.67 26.82 16
12 O -0.58 -27.69 11.98 -4.56 -0.05 -27.75 16
13 C -0.47 -20.99 6.50 24.65 0.16 -20.83 16
14 S 0.03 0.92 22.25 -56.49 -1.26 -0.34 16
15 C -0.15 -5.31 11.06 66.64 0.74 -4.57 16
16 C -0.17 -7.15 8.19 22.60 0.19 -6.97 16
17 C 0.09 4.47 5.40 -20.89 -0.11 4.36 16
18 C -0.43 -21.34 8.44 23.33 0.20 -21.15 16
19 H 0.09 4.82 6.13 -2.91 -0.02 4.80 16
20 C 0.00 0.16 5.24 85.38 0.45 0.61 16
21 N -0.77 -34.87 12.49 21.89 0.27 -34.59 16
22 Si 1.12 38.31 29.98 68.60 2.06 40.37 16
23 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16
24 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16
25 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16
26 N -0.51 -18.00 11.21 -199.28 -2.23 -20.23 16
27 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16
28 H 0.18 0.25 8.14 -2.39 -0.02 0.23 16
29 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16
30 H 0.44 14.49 7.90 -92.71 -0.73 13.76 16
31 H 0.19 4.86 8.06 -2.91 -0.02 4.84 16
32 H 0.13 5.45 6.79 -2.91 -0.02 5.43 16
33 H 0.30 13.70 6.22 -92.71 -0.58 13.12 16
Total: -1.00 -69.12 322.15 -2.48 -71.61
By element:
Atomic # 1 Polarization: 37.17 SS G_CDS: -0.69 Total: 36.48 kcal
Atomic # 6 Polarization: -18.54 SS G_CDS: 7.20 Total: -11.34 kcal
Atomic # 7 Polarization: -102.16 SS G_CDS: -4.83 Total: -106.99 kcal
Atomic # 8 Polarization: -80.18 SS G_CDS: -4.63 Total: -84.81 kcal
Atomic # 14 Polarization: 38.31 SS G_CDS: 2.06 Total: 40.37 kcal
Atomic # 16 Polarization: 56.27 SS G_CDS: -1.59 Total: 54.68 kcal
Total: -69.12 -2.48 -71.61 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364046553.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.789 kcal
(2) G-P(sol) polarization free energy of solvation -69.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.819 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds