Wall clock time and date at job start Sat Apr 11 2020 06:28:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.99552 * 2 1
4 4 C 1.54324 * 109.88158 * 238.90709 * 2 1 3
5 5 H 1.09000 * 110.71874 * 336.92723 * 4 2 1
6 6 N 1.46496 * 110.72137 * 100.02835 * 4 2 1
7 7 C 1.36945 * 119.99718 * 202.55765 * 6 4 2
8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4
9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4
10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6
11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6
12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7
13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7
14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7
15 15 C 1.55159 * 103.09883 * 218.47763 * 4 2 1
16 16 C 1.54913 * 101.58472 * 35.41043 * 15 4 2
17 17 N 1.47315 * 110.06244 * 121.17111 * 2 1 3
18 18 C 1.34775 * 125.61584 * 298.24310 * 17 2 1
19 19 O 1.21574 * 120.00243 * 359.84295 * 18 17 2
20 20 C 1.47679 * 119.99787 * 179.84436 * 18 17 2
21 21 N 1.31806 * 126.46634 * 359.68039 * 20 18 17
22 22 N 1.28466 * 110.13765 * 179.86006 * 21 20 18
23 23 H 0.97006 * 124.94023 * 180.17258 * 22 21 20
24 24 C 1.35619 * 110.12675 * 0.42147 * 22 21 20
25 25 C 1.35439 * 107.13791 * 359.75062 * 24 22 21
26 26 Br 1.89100 * 127.23919 * 179.97438 * 25 24 22
27 27 H 1.09000 * 109.47212 * 181.09677 * 1 2 3
28 28 H 1.09001 * 109.46996 * 301.09597 * 1 2 3
29 29 H 1.09004 * 109.46837 * 61.09562 * 1 2 3
30 30 H 0.96996 * 120.00499 * 22.55496 * 6 4 2
31 31 H 0.97001 * 119.99885 * 179.97438 * 10 9 7
32 32 H 1.08998 * 111.00515 * 153.48428 * 15 4 2
33 33 H 1.09000 * 111.00346 * 277.30076 * 15 4 2
34 34 H 1.09007 * 110.36263 * 81.82420 * 16 15 4
35 35 H 1.08995 * 110.37086 * 204.15203 * 16 15 4
36 36 H 1.08007 * 126.43237 * 179.77770 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0548 -0.7495 -1.2428
5 1 1.3039 -1.4436 -1.6201
6 7 2.4555 0.1961 -2.2875
7 6 2.5064 -0.2089 -3.5947
8 1 2.2515 -1.2255 -3.8552
9 6 2.8855 0.6871 -4.5846
10 7 3.1966 1.9260 -4.2670
11 14 2.9555 0.1344 -6.3676
12 1 3.3847 1.2709 -7.2217
13 1 3.9265 -0.9809 -6.5023
14 1 1.6104 -0.3259 -6.7964
15 6 3.2870 -1.5177 -0.6958
16 6 2.8162 -1.8830 0.7341
17 7 2.0354 -0.7162 1.1840
18 6 1.8176 -0.3640 2.4665
19 8 1.1556 0.6232 2.7219
20 6 2.3832 -1.1773 3.5618
21 7 3.1104 -2.2689 3.4320
22 7 3.4394 -2.7213 4.5884
23 1 3.9763 -3.5144 4.7426
24 6 2.9224 -1.9321 5.5626
25 6 2.2411 -0.9352 4.9491
26 35 1.2979 0.4818 5.7727
27 1 -0.3634 -1.0275 0.0197
28 1 -0.3633 0.5308 0.8800
29 1 -0.3633 0.4967 -0.8997
30 1 2.6847 1.1091 -2.0534
31 1 3.4618 2.5520 -4.9588
32 1 3.4811 -2.4144 -1.2842
33 1 4.1665 -0.8746 -0.6657
34 1 2.1880 -2.7736 0.7107
35 1 3.6743 -2.0401 1.3875
36 1 3.0336 -2.0719 6.6278
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987190597.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:29
Heat of formation + Delta-G solvation = 69.870890 kcal
Electronic energy + Delta-G solvation = -21810.460091 eV
Core-core repulsion = 18378.458035 eV
Total energy + Delta-G solvation = -3432.002056 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 342.043 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-42.96216 -39.66723 -37.27088 -34.09835 -32.82868 -32.18150 -31.08598 -30.72427
-29.57509 -28.97442 -25.13632 -24.56937 -23.00071 -22.04115 -21.51929 -20.03690
-19.17715 -18.36351 -17.20009 -16.76804 -16.23684 -15.69858 -14.86324 -14.60189
-14.07046 -13.90669 -13.72630 -13.48774 -13.26750 -12.86496 -12.65845 -12.08339
-11.89601 -11.75237 -11.44513 -11.25792 -10.99122 -10.97310 -10.76494 -10.52858
-10.43103 -10.22827 -9.97268 -9.75309 -9.71811 -9.51748 -9.09780 -8.90186
-8.30405 -6.99556 -5.78421 -3.08693 1.33975 1.46472 1.55659 2.57490
3.16433 3.42290 3.43571 3.48234 3.49240 4.25581 4.36474 4.57616
4.76891 5.00073 5.16612 5.30576 5.45517 5.57684 5.63605 5.69991
5.79498 5.90585 6.07791 6.15844 6.21248 6.39026 6.50176 6.54292
6.65837 6.68743 6.80934 6.98583 7.40092 7.68075 7.78965 8.35568
8.39433 9.50341 10.05323 10.40233 11.43719
Molecular weight = 342.04amu
Principal moments of inertia in cm(-1)
A = 0.026214 B = 0.002834 C = 0.002650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.887016 B = 9878.349173 C =10562.853925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.129 3.871
3 H 0.080 0.920
4 C 0.176 3.824
5 H 0.066 0.934
6 N -0.714 5.714
7 C -0.243 4.243
8 H 0.071 0.929
9 C -0.010 4.010
10 N -0.930 5.930
11 Si 0.908 3.092
12 H -0.291 1.291
13 H -0.286 1.286
14 H -0.285 1.285
15 C -0.157 4.157
16 C 0.102 3.898
17 N -0.594 5.594
18 C 0.604 3.396
19 O -0.516 6.516
20 C 0.029 3.971
21 N -0.242 5.242
22 N -0.382 5.382
23 H 0.451 0.549
24 C 0.023 3.977
25 C -0.161 4.161
26 Br 0.014 6.986
27 H 0.050 0.950
28 H 0.063 0.937
29 H 0.071 0.929
30 H 0.386 0.614
31 H 0.257 0.743
32 H 0.075 0.925
33 H 0.074 0.926
34 H 0.062 0.938
35 H 0.083 0.917
36 H 0.194 0.806
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.477 -10.495 24.661 26.806
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.026 3.974
3 H 0.098 0.902
4 C 0.064 3.936
5 H 0.084 0.916
6 N -0.355 5.355
7 C -0.374 4.374
8 H 0.089 0.911
9 C -0.206 4.206
10 N -0.578 5.578
11 Si 0.739 3.261
12 H -0.217 1.217
13 H -0.212 1.212
14 H -0.212 1.212
15 C -0.198 4.198
16 C -0.022 4.022
17 N -0.328 5.328
18 C 0.389 3.611
19 O -0.390 6.390
20 C -0.135 4.135
21 N -0.077 5.077
22 N -0.096 5.096
23 H 0.297 0.703
24 C -0.125 4.125
25 C -0.252 4.252
26 Br 0.097 6.903
27 H 0.069 0.931
28 H 0.082 0.918
29 H 0.090 0.910
30 H 0.220 0.780
31 H 0.067 0.933
32 H 0.093 0.907
33 H 0.092 0.908
34 H 0.081 0.919
35 H 0.101 0.899
36 H 0.211 0.789
Dipole moment (debyes) X Y Z Total
from point charges -0.768 -10.144 24.145 26.201
hybrid contribution 0.496 -0.375 -0.311 0.695
sum -0.273 -10.519 23.834 26.053
Atomic orbital electron populations
1.22042 0.94701 1.01640 1.02833 1.22019 0.94488 0.96908 0.84031
0.90182 1.21252 0.93626 0.91571 0.87109 0.91616 1.42342 1.80263
1.10477 1.02399 1.19165 1.38958 0.95966 0.83335 0.91058 1.24755
1.02065 0.95748 0.98062 1.69659 1.51834 1.03779 1.32509 0.86261
0.77758 0.77228 0.84869 1.21707 1.21246 1.21207 1.23585 1.01270
1.01615 0.93318 1.22507 0.95323 0.87619 0.96717 1.48440 1.51400
1.28548 1.04369 1.16402 0.80727 0.83739 0.80274 1.90844 1.39614
1.25921 1.82602 1.21975 1.02432 0.95592 0.93481 1.73824 1.15011
1.11815 1.07091 1.43548 1.39594 1.23635 1.02831 0.70306 1.22890
0.99869 0.93003 0.96694 1.21990 1.08854 1.00507 0.93831 1.96703
1.73228 1.42382 1.77966 0.93117 0.91834 0.91017 0.77973 0.93346
0.90671 0.90771 0.91947 0.89852 0.78919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 50.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.65 9.11 37.16 0.34 -2.31 16
2 C 0.13 2.36 3.22 -66.79 -0.21 2.15 16
3 H 0.08 1.63 7.70 -51.93 -0.40 1.23 16
4 C 0.18 3.45 3.12 -66.10 -0.21 3.24 16
5 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16
6 N -0.71 -17.53 5.24 -51.65 -0.27 -17.80 16
7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16
8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16
10 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16
11 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16
12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16
14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
15 C -0.16 -2.68 6.77 -24.58 -0.17 -2.84 16
16 C 0.10 1.50 6.15 -2.53 -0.02 1.48 16
17 N -0.59 -9.94 3.08 -163.95 -0.50 -10.44 16
18 C 0.60 10.30 7.65 -12.41 -0.09 10.20 16
19 O -0.52 -9.90 14.68 5.30 0.08 -9.83 16
20 C 0.03 0.41 6.96 -82.76 -0.58 -0.17 16
21 N -0.24 -2.78 9.34 33.42 0.31 -2.46 16
22 N -0.38 -2.73 6.86 30.60 0.21 -2.52 16
23 H 0.45 1.25 8.96 -190.44 -1.71 -0.46 16
24 C 0.02 0.17 12.04 -16.88 -0.20 -0.03 16
25 C -0.16 -1.91 6.68 -39.32 -0.26 -2.17 16
26 Br 0.01 0.16 32.70 -68.01 -2.22 -2.06 16
27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
28 H 0.06 1.12 6.94 -51.93 -0.36 0.76 16
29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
30 H 0.39 10.22 7.53 -40.82 -0.31 9.91 16
31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16
34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
35 H 0.08 1.15 6.20 -51.93 -0.32 0.83 16
36 H 0.19 0.62 8.06 -52.48 -0.42 0.19 16
LS Contribution 323.04 15.07 4.87 4.87
Total: -1.00 -33.05 323.04 -9.06 -42.11
By element:
Atomic # 1 Polarization: 11.32 SS G_CDS: -5.58 Total: 5.73 kcal
Atomic # 6 Polarization: 4.10 SS G_CDS: -1.65 Total: 2.46 kcal
Atomic # 7 Polarization: -60.76 SS G_CDS: 0.47 Total: -60.29 kcal
Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Atomic # 35 Polarization: 0.16 SS G_CDS: -2.22 Total: -2.06 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -33.05 -9.06 -42.11 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987190597.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.978 kcal
(2) G-P(sol) polarization free energy of solvation -33.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.871 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds