Wall clock time and date at job start Sat Apr 11 2020 06:28:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09002 * 109.99552 * 2 1
4 4 C 1.54324 * 109.88158 * 238.90709 * 2 1 3
5 5 H 1.09000 * 110.71874 * 336.92723 * 4 2 1
6 6 N 1.46496 * 110.72137 * 100.02835 * 4 2 1
7 7 C 1.36945 * 119.99718 * 202.55765 * 6 4 2
8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4
9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4
10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6
11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6
12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7
13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7
14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7
15 15 C 1.55159 * 103.09883 * 218.47763 * 4 2 1
16 16 C 1.54913 * 101.58472 * 35.41043 * 15 4 2
17 17 N 1.47315 * 110.06244 * 121.17111 * 2 1 3
18 18 C 1.34775 * 125.61584 * 298.24310 * 17 2 1
19 19 O 1.21574 * 120.00243 * 359.84295 * 18 17 2
20 20 C 1.47679 * 119.99787 * 179.84436 * 18 17 2
21 21 N 1.31806 * 126.46634 * 359.68039 * 20 18 17
22 22 N 1.28466 * 110.13765 * 179.86006 * 21 20 18
23 23 H 0.97006 * 124.94023 * 180.17258 * 22 21 20
24 24 C 1.35619 * 110.12675 * 0.42147 * 22 21 20
25 25 C 1.35439 * 107.13791 * 359.75062 * 24 22 21
26 26 Br 1.89100 * 127.23919 * 179.97438 * 25 24 22
27 27 H 1.09000 * 109.47212 * 181.09677 * 1 2 3
28 28 H 1.09001 * 109.46996 * 301.09597 * 1 2 3
29 29 H 1.09004 * 109.46837 * 61.09562 * 1 2 3
30 30 H 0.96996 * 120.00499 * 22.55496 * 6 4 2
31 31 H 0.97001 * 119.99885 * 179.97438 * 10 9 7
32 32 H 1.08998 * 111.00515 * 153.48428 * 15 4 2
33 33 H 1.09000 * 111.00346 * 277.30076 * 15 4 2
34 34 H 1.09007 * 110.36263 * 81.82420 * 16 15 4
35 35 H 1.08995 * 110.37086 * 204.15203 * 16 15 4
36 36 H 1.08007 * 126.43237 * 179.77770 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0548 -0.7495 -1.2428
5 1 1.3039 -1.4436 -1.6201
6 7 2.4555 0.1961 -2.2875
7 6 2.5064 -0.2089 -3.5947
8 1 2.2515 -1.2255 -3.8552
9 6 2.8855 0.6871 -4.5846
10 7 3.1966 1.9260 -4.2670
11 14 2.9555 0.1344 -6.3676
12 1 3.3847 1.2709 -7.2217
13 1 3.9265 -0.9809 -6.5023
14 1 1.6104 -0.3259 -6.7964
15 6 3.2870 -1.5177 -0.6958
16 6 2.8162 -1.8830 0.7341
17 7 2.0354 -0.7162 1.1840
18 6 1.8176 -0.3640 2.4665
19 8 1.1556 0.6232 2.7219
20 6 2.3832 -1.1773 3.5618
21 7 3.1104 -2.2689 3.4320
22 7 3.4394 -2.7213 4.5884
23 1 3.9763 -3.5144 4.7426
24 6 2.9224 -1.9321 5.5626
25 6 2.2411 -0.9352 4.9491
26 35 1.2979 0.4818 5.7727
27 1 -0.3634 -1.0275 0.0197
28 1 -0.3633 0.5308 0.8800
29 1 -0.3633 0.4967 -0.8997
30 1 2.6847 1.1091 -2.0534
31 1 3.4618 2.5520 -4.9588
32 1 3.4811 -2.4144 -1.2842
33 1 4.1665 -0.8746 -0.6657
34 1 2.1880 -2.7736 0.7107
35 1 3.6743 -2.0401 1.3875
36 1 3.0336 -2.0719 6.6278
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987190597.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:29
Heat of formation + Delta-G solvation = 46.496970 kcal
Electronic energy + Delta-G solvation = -21811.473660 eV
Core-core repulsion = 18378.458035 eV
Total energy + Delta-G solvation = -3433.015625 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 342.043 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-43.75311 -41.02166 -38.70684 -35.90757 -33.77360 -33.47940 -32.54017 -32.01013
-30.60346 -30.37195 -26.84562 -25.72132 -24.74748 -23.17018 -22.45489 -21.49879
-20.26040 -19.30414 -19.07991 -17.99265 -17.41653 -16.84868 -16.52362 -15.99946
-15.48554 -15.32308 -14.85961 -14.70962 -14.57469 -14.39493 -14.07002 -13.58207
-13.31728 -13.16017 -12.92326 -12.68183 -12.54936 -12.29941 -12.20881 -12.16432
-12.00834 -11.70766 -11.59203 -11.40916 -10.88428 -10.66461 -10.57981 -9.93177
-9.62901 -9.00866 -7.91637 -5.21886 0.37707 0.67420 0.82097 1.50602
1.53688 1.59473 1.71792 2.14904 2.22809 2.59466 3.26796 3.41250
3.64598 3.76104 3.78078 3.96568 4.08590 4.21312 4.36166 4.40800
4.43891 4.54645 4.68038 4.70484 4.85562 4.99137 5.06985 5.23053
5.24166 5.36484 5.46098 5.56385 5.98972 6.28229 6.48347 6.64644
7.08565 7.34783 8.06444 8.30962 9.31696
Molecular weight = 342.04amu
Principal moments of inertia in cm(-1)
A = 0.026214 B = 0.002834 C = 0.002650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.887016 B = 9878.349173 C =10562.853925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.135 3.865
3 H 0.050 0.950
4 C 0.172 3.828
5 H 0.072 0.928
6 N -0.728 5.728
7 C -0.238 4.238
8 H 0.083 0.917
9 C -0.075 4.075
10 N -0.971 5.971
11 Si 0.974 3.026
12 H -0.300 1.300
13 H -0.275 1.275
14 H -0.277 1.277
15 C -0.147 4.147
16 C 0.114 3.886
17 N -0.598 5.598
18 C 0.597 3.403
19 O -0.548 6.548
20 C -0.004 4.004
21 N -0.247 5.247
22 N -0.355 5.355
23 H 0.473 0.527
24 C 0.060 3.940
25 C -0.192 4.192
26 Br -0.001 7.001
27 H 0.066 0.934
28 H 0.055 0.945
29 H 0.061 0.939
30 H 0.371 0.629
31 H 0.250 0.750
32 H 0.089 0.911
33 H 0.054 0.946
34 H 0.083 0.917
35 H 0.098 0.902
36 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.118 -13.678 26.236 29.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.031 3.969
3 H 0.068 0.932
4 C 0.062 3.938
5 H 0.090 0.910
6 N -0.367 5.367
7 C -0.370 4.370
8 H 0.101 0.899
9 C -0.267 4.267
10 N -0.622 5.622
11 Si 0.803 3.197
12 H -0.227 1.227
13 H -0.201 1.201
14 H -0.203 1.203
15 C -0.188 4.188
16 C -0.008 4.008
17 N -0.331 5.331
18 C 0.384 3.616
19 O -0.425 6.425
20 C -0.166 4.166
21 N -0.085 5.085
22 N -0.073 5.073
23 H 0.324 0.676
24 C -0.088 4.088
25 C -0.283 4.283
26 Br 0.082 6.918
27 H 0.085 0.915
28 H 0.074 0.926
29 H 0.080 0.920
30 H 0.203 0.797
31 H 0.059 0.941
32 H 0.108 0.892
33 H 0.073 0.927
34 H 0.101 0.899
35 H 0.116 0.884
36 H 0.259 0.741
Dipole moment (debyes) X Y Z Total
from point charges -0.164 -13.418 25.751 29.038
hybrid contribution 0.339 0.520 -0.650 0.899
sum 0.174 -12.898 25.101 28.221
Atomic orbital electron populations
1.21924 0.93865 1.02378 1.01936 1.21736 0.95059 0.95455 0.84681
0.93229 1.21419 0.94866 0.91044 0.86437 0.90979 1.42504 1.80626
1.10656 1.02931 1.19595 1.36857 0.96221 0.84325 0.89888 1.25575
1.02998 0.95928 1.02185 1.69835 1.54003 1.05029 1.33302 0.85203
0.78057 0.76563 0.79866 1.22673 1.20136 1.20335 1.23408 0.99050
1.01253 0.95098 1.22519 0.95929 0.87371 0.94992 1.48469 1.51705
1.28903 1.04026 1.16889 0.80224 0.83691 0.80749 1.90812 1.41070
1.27429 1.83166 1.21544 1.04819 0.96950 0.93300 1.73685 1.14689
1.11049 1.09031 1.43660 1.38227 1.23687 1.01719 0.67603 1.23506
0.96477 0.90402 0.98372 1.22176 1.10852 1.01907 0.93341 1.96676
1.73818 1.43563 1.77711 0.91463 0.92600 0.91967 0.79685 0.94113
0.89225 0.92746 0.89853 0.88391 0.74146
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.99 9.11 71.98 0.66 -4.33 16
2 C 0.13 5.06 3.22 45.29 0.15 5.20 16
3 H 0.05 2.15 7.70 -2.39 -0.02 2.14 16
4 C 0.17 6.73 3.12 46.18 0.14 6.87 16
5 H 0.07 2.74 7.81 -2.39 -0.02 2.72 16
6 N -0.73 -36.45 5.24 -317.34 -1.66 -38.11 16
7 C -0.24 -12.89 9.97 84.03 0.84 -12.05 16
8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16
9 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16
10 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16
11 Si 0.97 45.56 29.55 68.60 2.03 47.59 16
12 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16
14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
15 C -0.15 -4.88 6.77 31.99 0.22 -4.67 16
16 C 0.11 3.15 6.15 86.86 0.53 3.68 16
17 N -0.60 -19.81 3.08 -790.90 -2.43 -22.24 16
18 C 0.60 20.35 7.65 86.74 0.66 21.02 16
19 O -0.55 -21.64 14.68 -3.95 -0.06 -21.70 16
20 C 0.00 -0.11 6.96 42.46 0.30 0.18 16
21 N -0.25 -4.93 9.34 -48.18 -0.45 -5.38 16
22 N -0.36 -3.53 6.86 -57.11 -0.39 -3.92 16
23 H 0.47 0.23 8.96 -219.99 -1.97 -1.74 16
24 C 0.06 0.64 12.04 83.46 1.00 1.64 16
25 C -0.19 -4.14 6.68 22.44 0.15 -3.99 16
26 Br 0.00 -0.03 32.70 -20.37 -0.67 -0.69 16
27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
28 H 0.05 2.03 6.94 -2.39 -0.02 2.01 16
29 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16
30 H 0.37 20.54 7.53 -92.71 -0.70 19.84 16
31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16
32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16
33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
34 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16
35 H 0.10 2.46 6.20 -2.39 -0.01 2.45 16
36 H 0.24 0.09 8.06 -2.91 -0.02 0.07 16
Total: -1.00 -74.41 323.04 0.23 -74.18
By element:
Atomic # 1 Polarization: 21.45 SS G_CDS: -1.53 Total: 19.92 kcal
Atomic # 6 Polarization: 4.67 SS G_CDS: 5.11 Total: 9.78 kcal
Atomic # 7 Polarization: -124.42 SS G_CDS: -4.65 Total: -129.07 kcal
Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal
Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal
Atomic # 35 Polarization: -0.03 SS G_CDS: -0.67 Total: -0.69 kcal
Total: -74.41 0.23 -74.18 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987190597.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.676 kcal
(2) G-P(sol) polarization free energy of solvation -74.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.497 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds