Wall clock time and date at job start Sat Apr 11 2020 06:29:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 120.00428 * 2 1
4 4 H 1.48500 * 109.47033 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47233 * 300.00118 * 3 2 1
6 6 H 1.48499 * 109.46626 * 60.00181 * 3 2 1
7 7 C 1.38818 * 119.99438 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99684 * 180.02562 * 7 2 1
9 9 N 1.36936 * 119.99857 * 359.97438 * 7 2 1
10 10 C 1.47864 * 126.94637 * 0.02562 * 9 7 2
11 11 C 1.56025 * 105.10227 * 181.96704 * 10 9 7
12 12 H 1.09004 * 116.24662 * 158.84076 * 11 10 9
13 13 C 1.57079 * 99.60915 * 32.80515 * 11 10 9
14 14 C 1.49289 * 126.94028 * 179.97438 * 9 7 2
15 15 H 1.09002 * 116.15626 * 15.88069 * 14 9 7
16 16 C 1.56016 * 104.09361 * 246.73285 * 14 9 7
17 17 N 1.49295 * 104.09328 * 287.92025 * 11 10 9
18 18 C 1.34775 * 126.94555 * 247.56103 * 17 11 10
19 19 O 1.21577 * 120.00176 * 354.73897 * 18 17 11
20 20 C 1.47633 * 119.99581 * 174.73706 * 18 17 11
21 21 C 1.39698 * 120.14919 * 319.23525 * 20 18 17
22 22 C 1.37993 * 119.86918 * 179.74542 * 21 20 18
23 23 F 1.35102 * 119.92470 * 180.23553 * 22 21 20
24 24 C 1.38802 * 120.15239 * 0.50999 * 22 21 20
25 25 Cl 1.73602 * 119.85584 * 179.74565 * 24 22 21
26 26 C 1.38328 * 120.29134 * 359.76429 * 24 22 21
27 27 C 1.38259 * 120.12933 * 359.97438 * 26 24 22
28 28 F 1.35101 * 120.07910 * 180.02562 * 27 26 24
29 29 H 0.97004 * 119.99556 * 359.97438 * 1 2 3
30 30 H 1.08997 * 110.31300 * 63.06325 * 10 9 7
31 31 H 1.08999 * 110.40225 * 300.91692 * 10 9 7
32 32 H 1.09010 * 112.36350 * 64.27331 * 13 11 10
33 33 H 1.08994 * 112.37066 * 191.71289 * 13 11 10
34 34 H 1.09003 * 110.31630 * 47.68038 * 16 14 9
35 35 H 1.09005 * 110.31305 * 169.76360 * 16 14 9
36 36 H 1.08010 * 120.06368 * 359.97438 * 21 20 18
37 37 H 1.07996 * 119.93619 * 179.97438 * 26 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3962 1.2126
7 6 2.0102 -1.2023 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3254 -2.3881 -0.0005
10 6 -0.1425 -2.5667 -0.0005
11 6 -0.3641 -4.1103 0.0512
12 1 -1.3365 -4.4458 0.4117
13 6 0.8837 -4.5257 0.9101
14 6 1.9099 -3.7618 -0.0016
15 1 2.9642 -3.8355 0.2653
16 6 1.5076 -4.3448 -1.3917
17 7 0.0310 -4.5801 -1.3098
18 6 -0.7786 -5.0979 -2.2547
19 8 -1.9488 -5.3103 -2.0028
20 6 -0.2442 -5.4073 -3.5957
21 6 0.6515 -4.5311 -4.2134
22 6 1.1515 -4.8286 -5.4647
23 9 2.0214 -3.9843 -6.0610
24 6 0.7583 -5.9904 -6.1144
25 17 1.3870 -6.3538 -7.6913
26 6 -0.1326 -6.8598 -5.5112
27 6 -0.6368 -6.5761 -4.2555
28 9 -1.5065 -7.4262 -3.6671
29 1 -0.4850 0.8401 0.0004
30 1 -0.5740 -2.1528 -0.9118
31 1 -0.5831 -2.0916 0.8759
32 1 0.8449 -4.1201 1.9212
33 1 1.0488 -5.6031 0.9078
34 1 1.7263 -3.6258 -2.1813
35 1 2.0348 -5.2808 -1.5764
36 1 0.9549 -3.6244 -3.7109
37 1 -0.4350 -7.7620 -6.0222
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001032595670.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:15
Heat of formation + Delta-G solvation = -33.007476 kcal
Electronic energy + Delta-G solvation = -27761.603925 eV
Core-core repulsion = 23396.188148 eV
Total energy + Delta-G solvation = -4365.415778 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 342.069 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-49.21969 -49.16963 -40.40332 -39.09447 -37.78112 -36.84986 -33.75193 -32.26392
-31.08207 -30.38225 -29.04351 -28.65801 -25.45479 -24.80922 -23.49873 -23.12241
-20.99296 -19.98591 -19.08070 -18.07417 -17.96855 -17.64891 -16.96461 -16.44146
-16.15123 -15.79414 -15.61972 -15.26288 -14.91764 -14.61987 -14.38034 -14.09769
-13.94617 -13.48682 -13.28021 -13.15547 -12.89968 -12.43852 -12.16563 -11.91385
-11.73375 -11.59571 -11.48727 -11.35683 -11.10336 -10.94563 -10.84164 -10.70780
-10.34052 -10.12451 -9.84513 -9.72060 -9.50621 -8.92334 -8.79967 -8.19880
-7.02768 -5.85026 -3.20188 0.15894 0.52535 1.45911 2.47889 2.99457
3.17404 3.32699 3.38173 3.41214 3.64498 3.77072 4.13077 4.30192
4.34966 4.55897 4.90343 4.95340 5.05759 5.19435 5.26889 5.30712
5.46391 5.48424 5.51979 5.58230 5.67079 5.79516 6.02993 6.12098
6.18137 6.28594 6.34527 6.48027 6.54466 7.33176 7.36443 7.63305
7.81455 8.00789 8.27186 9.01819 9.62757 10.30506 11.27069
Molecular weight = 342.07amu
Principal moments of inertia in cm(-1)
A = 0.012953 B = 0.003777 C = 0.003165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2161.162022 B = 7411.663892 C = 8844.679889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.004 4.004
3 Si 0.912 3.088
4 H -0.279 1.279
5 H -0.290 1.290
6 H -0.290 1.290
7 C -0.234 4.234
8 H 0.082 0.918
9 N -0.597 5.597
10 C 0.173 3.827
11 C 0.098 3.902
12 H 0.116 0.884
13 C -0.150 4.150
14 C 0.142 3.858
15 H 0.110 0.890
16 C 0.078 3.922
17 N -0.599 5.599
18 C 0.573 3.427
19 O -0.532 6.532
20 C -0.119 4.119
21 C -0.081 4.081
22 C 0.099 3.901
23 F -0.117 7.117
24 C -0.034 4.034
25 Cl -0.034 7.034
26 C -0.128 4.128
27 C 0.152 3.848
28 F -0.110 7.110
29 H 0.254 0.746
30 H 0.048 0.952
31 H 0.059 0.941
32 H 0.087 0.913
33 H 0.067 0.933
34 H 0.075 0.925
35 H 0.059 0.941
36 H 0.170 0.830
37 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.161 -14.377 -9.542 17.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.201 4.201
3 Si 0.743 3.257
4 H -0.204 1.204
5 H -0.217 1.217
6 H -0.217 1.217
7 C -0.362 4.362
8 H 0.100 0.900
9 N -0.321 5.321
10 C 0.048 3.952
11 C -0.004 4.004
12 H 0.133 0.867
13 C -0.189 4.189
14 C 0.033 3.967
15 H 0.128 0.872
16 C -0.047 4.047
17 N -0.332 5.332
18 C 0.360 3.640
19 O -0.410 6.410
20 C -0.123 4.123
21 C -0.100 4.100
22 C 0.079 3.921
23 F -0.095 7.095
24 C -0.062 4.062
25 Cl -0.005 7.005
26 C -0.147 4.147
27 C 0.131 3.869
28 F -0.088 7.088
29 H 0.065 0.935
30 H 0.066 0.934
31 H 0.077 0.923
32 H 0.106 0.894
33 H 0.085 0.915
34 H 0.093 0.907
35 H 0.078 0.922
36 H 0.187 0.813
37 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 2.494 -14.247 -9.613 17.367
hybrid contribution 0.458 0.952 -0.380 1.123
sum 2.952 -13.295 -9.993 16.892
Atomic orbital electron populations
1.69917 1.04972 1.25348 1.56231 1.24822 0.95676 0.97763 1.01812
0.86050 0.78726 0.83658 0.77313 1.20406 1.21724 1.21687 1.19095
0.90464 0.81957 1.44693 0.89996 1.45274 1.01289 0.99306 1.86272
1.21961 0.84781 0.86903 1.01564 1.24411 0.98207 0.97735 0.80043
0.86653 1.24156 0.96401 0.99068 0.99311 1.23187 0.96761 0.86299
0.90493 0.87211 1.23902 0.78892 0.99307 1.02582 1.49549 1.09427
1.59371 1.14893 1.17265 0.85471 0.78421 0.82823 1.90826 1.15957
1.53831 1.80391 1.20074 0.99824 0.95170 0.97222 1.21486 0.94635
1.00959 0.92922 1.17154 0.93748 0.88925 0.92315 1.91596 1.66064
1.68942 1.82901 1.20797 0.99943 0.95568 0.89877 1.98412 1.85468
1.94217 1.22394 1.20774 0.98360 1.01494 0.94106 1.17329 0.90416
0.88164 0.90987 1.91611 1.65756 1.68181 1.83277 0.93537 0.93376
0.92296 0.89447 0.91484 0.90655 0.92238 0.81317 0.82082
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -25.78 10.56 55.49 0.59 -25.19 16
2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16
3 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16
4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
7 C -0.23 -5.92 10.38 -15.06 -0.16 -6.08 16
8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16
9 N -0.60 -13.46 3.02 -156.33 -0.47 -13.93 16
10 C 0.17 3.91 4.76 -1.68 -0.01 3.91 16
11 C 0.10 1.79 5.20 -62.55 -0.33 1.47 16
12 H 0.12 2.06 8.04 -51.93 -0.42 1.64 16
13 C -0.15 -2.36 6.82 -22.30 -0.15 -2.51 16
14 C 0.14 2.42 5.53 -62.54 -0.35 2.07 16
15 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16
16 C 0.08 1.21 5.36 -0.62 0.00 1.21 16
17 N -0.60 -10.43 3.01 -156.41 -0.47 -10.90 16
18 C 0.57 10.25 7.35 -12.43 -0.09 10.16 16
19 O -0.53 -11.14 16.63 5.30 0.09 -11.05 16
20 C -0.12 -1.73 5.53 -104.92 -0.58 -2.31 16
21 C -0.08 -1.07 8.55 -39.13 -0.33 -1.41 16
22 C 0.10 1.20 7.26 -39.46 -0.29 0.91 16
23 F -0.12 -1.49 16.82 2.25 0.04 -1.45 16
24 C -0.03 -0.36 6.33 -39.34 -0.25 -0.61 16
25 Cl -0.03 -0.33 28.60 -51.86 -1.48 -1.81 16
26 C -0.13 -1.30 9.79 -39.54 -0.39 -1.68 16
27 C 0.15 1.97 7.24 -38.97 -0.28 1.68 16
28 F -0.11 -1.58 16.26 2.25 0.04 -1.54 16
29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
30 H 0.05 1.25 7.67 -51.93 -0.40 0.86 16
31 H 0.06 1.48 7.46 -51.93 -0.39 1.10 16
32 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16
33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.08 1.24 5.85 -51.93 -0.30 0.93 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
36 H 0.17 2.38 5.84 -52.48 -0.31 2.07 16
37 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16
LS Contribution 332.98 15.07 5.02 5.02
Total: -1.00 -29.72 332.98 -8.45 -38.17
By element:
Atomic # 1 Polarization: 3.53 SS G_CDS: -3.47 Total: 0.05 kcal
Atomic # 6 Polarization: 9.92 SS G_CDS: -3.30 Total: 6.62 kcal
Atomic # 7 Polarization: -49.67 SS G_CDS: -0.36 Total: -50.02 kcal
Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal
Atomic # 9 Polarization: -3.07 SS G_CDS: 0.07 Total: -3.00 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal
Atomic # 17 Polarization: -0.33 SS G_CDS: -1.48 Total: -1.81 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -29.72 -8.45 -38.17 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032595670.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.166 kcal
(2) G-P(sol) polarization free energy of solvation -29.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds