Wall clock time and date at job start Sat Apr 11 2020 06:29:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 120.00428 * 2 1
4 4 H 1.48500 * 109.47033 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47233 * 300.00118 * 3 2 1
6 6 H 1.48499 * 109.46626 * 60.00181 * 3 2 1
7 7 C 1.38818 * 119.99438 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99684 * 180.02562 * 7 2 1
9 9 N 1.36936 * 119.99857 * 359.97438 * 7 2 1
10 10 C 1.47864 * 126.94637 * 0.02562 * 9 7 2
11 11 C 1.56025 * 105.10227 * 181.96704 * 10 9 7
12 12 H 1.09004 * 116.24662 * 158.84076 * 11 10 9
13 13 C 1.57079 * 99.60915 * 32.80515 * 11 10 9
14 14 C 1.49289 * 126.94028 * 179.97438 * 9 7 2
15 15 H 1.09002 * 116.15626 * 15.88069 * 14 9 7
16 16 C 1.56016 * 104.09361 * 246.73285 * 14 9 7
17 17 N 1.49295 * 104.09328 * 287.92025 * 11 10 9
18 18 C 1.34775 * 126.94555 * 247.56103 * 17 11 10
19 19 O 1.21577 * 120.00176 * 354.73897 * 18 17 11
20 20 C 1.47633 * 119.99581 * 174.73706 * 18 17 11
21 21 C 1.39698 * 120.14919 * 319.23525 * 20 18 17
22 22 C 1.37993 * 119.86918 * 179.74542 * 21 20 18
23 23 F 1.35102 * 119.92470 * 180.23553 * 22 21 20
24 24 C 1.38802 * 120.15239 * 0.50999 * 22 21 20
25 25 Cl 1.73602 * 119.85584 * 179.74565 * 24 22 21
26 26 C 1.38328 * 120.29134 * 359.76429 * 24 22 21
27 27 C 1.38259 * 120.12933 * 359.97438 * 26 24 22
28 28 F 1.35101 * 120.07910 * 180.02562 * 27 26 24
29 29 H 0.97004 * 119.99556 * 359.97438 * 1 2 3
30 30 H 1.08997 * 110.31300 * 63.06325 * 10 9 7
31 31 H 1.08999 * 110.40225 * 300.91692 * 10 9 7
32 32 H 1.09010 * 112.36350 * 64.27331 * 13 11 10
33 33 H 1.08994 * 112.37066 * 191.71289 * 13 11 10
34 34 H 1.09003 * 110.31630 * 47.68038 * 16 14 9
35 35 H 1.09005 * 110.31305 * 169.76360 * 16 14 9
36 36 H 1.08010 * 120.06368 * 359.97438 * 21 20 18
37 37 H 1.07996 * 119.93619 * 179.97438 * 26 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3962 1.2126
7 6 2.0102 -1.2023 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3254 -2.3881 -0.0005
10 6 -0.1425 -2.5667 -0.0005
11 6 -0.3641 -4.1103 0.0512
12 1 -1.3365 -4.4458 0.4117
13 6 0.8837 -4.5257 0.9101
14 6 1.9099 -3.7618 -0.0016
15 1 2.9642 -3.8355 0.2653
16 6 1.5076 -4.3448 -1.3917
17 7 0.0310 -4.5801 -1.3098
18 6 -0.7786 -5.0979 -2.2547
19 8 -1.9488 -5.3103 -2.0028
20 6 -0.2442 -5.4073 -3.5957
21 6 0.6515 -4.5311 -4.2134
22 6 1.1515 -4.8286 -5.4647
23 9 2.0214 -3.9843 -6.0610
24 6 0.7583 -5.9904 -6.1144
25 17 1.3870 -6.3538 -7.6913
26 6 -0.1326 -6.8598 -5.5112
27 6 -0.6368 -6.5761 -4.2555
28 9 -1.5065 -7.4262 -3.6671
29 1 -0.4850 0.8401 0.0004
30 1 -0.5740 -2.1528 -0.9118
31 1 -0.5831 -2.0916 0.8759
32 1 0.8449 -4.1201 1.9212
33 1 1.0488 -5.6031 0.9078
34 1 1.7263 -3.6258 -2.1813
35 1 2.0348 -5.2808 -1.5764
36 1 0.9549 -3.6244 -3.7109
37 1 -0.4350 -7.7620 -6.0222
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001032595670.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:14
Heat of formation + Delta-G solvation = -49.341708 kcal
Electronic energy + Delta-G solvation = -27762.312231 eV
Core-core repulsion = 23396.188148 eV
Total energy + Delta-G solvation = -4366.124083 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 342.069 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-50.22506 -50.21139 -41.77962 -40.26786 -39.11622 -37.75244 -35.47988 -33.69768
-32.42731 -31.41415 -30.54937 -30.28173 -27.02958 -26.19405 -24.78963 -24.30196
-22.38112 -21.45761 -20.51030 -19.43356 -19.00620 -18.72070 -18.41664 -17.77622
-17.32981 -17.19766 -16.72990 -16.60488 -16.16977 -15.91181 -15.73819 -15.48368
-15.14915 -14.95895 -14.58422 -14.05952 -14.01146 -13.90099 -13.65808 -13.39702
-13.18394 -12.92166 -12.86679 -12.73565 -12.58096 -12.33167 -12.23975 -12.18056
-11.99340 -11.85713 -11.52968 -11.27528 -10.75474 -10.45692 -9.93520 -9.65042
-8.91815 -7.84453 -5.19854 -0.85991 -0.43016 0.58835 1.30907 1.48127
1.49035 1.58565 1.69301 2.00096 2.48855 2.66492 2.76805 3.04086
3.22292 3.34409 3.42724 3.57355 3.73204 3.85200 3.98688 3.99877
4.17676 4.22121 4.33393 4.47274 4.55073 4.57383 4.67291 4.77241
4.89479 5.00288 5.11796 5.19680 5.22083 5.45467 5.49241 5.66565
6.09735 6.43059 6.87275 7.03610 7.71343 8.40936 9.26894
Molecular weight = 342.07amu
Principal moments of inertia in cm(-1)
A = 0.012953 B = 0.003777 C = 0.003165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2161.162022 B = 7411.663892 C = 8844.679889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.068 4.068
3 Si 0.972 3.028
4 H -0.258 1.258
5 H -0.301 1.301
6 H -0.298 1.298
7 C -0.227 4.227
8 H 0.097 0.903
9 N -0.616 5.616
10 C 0.187 3.813
11 C 0.100 3.900
12 H 0.115 0.885
13 C -0.128 4.128
14 C 0.137 3.863
15 H 0.140 0.860
16 C 0.084 3.916
17 N -0.601 5.601
18 C 0.569 3.431
19 O -0.572 6.572
20 C -0.133 4.133
21 C -0.080 4.080
22 C 0.100 3.900
23 F -0.121 7.121
24 C -0.024 4.024
25 Cl -0.015 7.015
26 C -0.103 4.103
27 C 0.149 3.851
28 F -0.120 7.120
29 H 0.243 0.757
30 H 0.000 1.000
31 H 0.021 0.979
32 H 0.085 0.915
33 H 0.103 0.897
34 H 0.065 0.935
35 H 0.101 0.899
36 H 0.156 0.844
37 H 0.196 0.804
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.518 -16.877 -10.863 20.815
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.606 5.606
2 C -0.260 4.260
3 Si 0.802 3.198
4 H -0.182 1.182
5 H -0.229 1.229
6 H -0.226 1.226
7 C -0.356 4.356
8 H 0.115 0.885
9 N -0.340 5.340
10 C 0.061 3.939
11 C -0.003 4.003
12 H 0.133 0.867
13 C -0.167 4.167
14 C 0.031 3.969
15 H 0.158 0.842
16 C -0.039 4.039
17 N -0.333 5.333
18 C 0.358 3.642
19 O -0.453 6.453
20 C -0.138 4.138
21 C -0.099 4.099
22 C 0.079 3.921
23 F -0.099 7.099
24 C -0.052 4.052
25 Cl 0.014 6.986
26 C -0.122 4.122
27 C 0.128 3.872
28 F -0.098 7.098
29 H 0.052 0.948
30 H 0.018 0.982
31 H 0.039 0.961
32 H 0.103 0.897
33 H 0.121 0.879
34 H 0.083 0.917
35 H 0.119 0.881
36 H 0.173 0.827
37 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges 4.921 -16.791 -10.941 20.637
hybrid contribution -0.238 1.664 -0.059 1.682
sum 4.683 -15.128 -11.000 19.281
Atomic orbital electron populations
1.70149 1.06545 1.25031 1.58827 1.25595 0.96307 1.00975 1.03166
0.85086 0.78667 0.79925 0.76134 1.18204 1.22873 1.22597 1.19564
0.91291 0.82955 1.41745 0.88509 1.45507 1.01388 1.01047 1.86074
1.21542 0.85063 0.89796 0.97521 1.24238 0.99812 0.94429 0.81789
0.86695 1.24063 0.93499 1.00919 0.98229 1.23609 0.98442 0.83230
0.91651 0.84243 1.23852 0.77943 1.00998 1.01115 1.49602 1.10318
1.58944 1.14458 1.17761 0.84972 0.77625 0.83857 1.90792 1.17578
1.55607 1.81325 1.19784 1.01350 0.96696 0.95928 1.21220 0.94843
1.00314 0.93521 1.17122 0.93663 0.89353 0.91947 1.91590 1.66202
1.69244 1.82849 1.20838 0.99246 0.94748 0.90372 1.98431 1.85158
1.93997 1.21009 1.21011 0.96602 1.02007 0.92561 1.17450 0.90448
0.87585 0.91757 1.91591 1.66184 1.68346 1.83647 0.94755 0.98170
0.96095 0.89686 0.87896 0.91664 0.88096 0.82690 0.78659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -56.67 10.56 21.65 0.23 -56.44 16
2 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16
3 Si 0.97 44.12 29.55 68.60 2.03 46.14 16
4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16
5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16
6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16
7 C -0.23 -11.47 10.38 84.04 0.87 -10.60 16
8 H 0.10 4.51 7.83 -2.91 -0.02 4.49 16
9 N -0.62 -27.91 3.02 -648.52 -1.96 -29.86 16
10 C 0.19 8.90 4.76 87.17 0.41 9.31 16
11 C 0.10 3.70 5.20 46.93 0.24 3.94 16
12 H 0.12 4.23 8.04 -2.39 -0.02 4.21 16
13 C -0.13 -3.75 6.82 33.47 0.23 -3.52 16
14 C 0.14 4.37 5.53 46.94 0.26 4.63 16
15 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16
16 C 0.08 2.45 5.36 86.79 0.47 2.92 16
17 N -0.60 -20.72 3.01 -767.03 -2.31 -23.02 16
18 C 0.57 20.46 7.35 86.72 0.64 21.09 16
19 O -0.57 -24.54 16.63 -3.96 -0.07 -24.61 16
20 C -0.13 -3.77 5.53 -20.06 -0.11 -3.89 16
21 C -0.08 -2.04 8.55 22.56 0.19 -1.85 16
22 C 0.10 2.22 7.26 22.35 0.16 2.38 16
23 F -0.12 -2.87 16.82 44.97 0.76 -2.11 16
24 C -0.02 -0.44 6.33 22.43 0.14 -0.29 16
25 Cl -0.02 -0.24 28.60 -2.72 -0.08 -0.32 16
26 C -0.10 -1.74 9.79 22.30 0.22 -1.52 16
27 C 0.15 3.56 7.24 22.66 0.16 3.72 16
28 F -0.12 -3.26 16.26 44.97 0.73 -2.53 16
29 H 0.24 14.28 8.31 -92.70 -0.77 13.51 16
30 H 0.00 0.01 7.67 -2.39 -0.02 -0.01 16
31 H 0.02 1.14 7.46 -2.39 -0.02 1.12 16
32 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16
33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16
34 H 0.07 2.08 5.85 -2.39 -0.01 2.07 16
35 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16
36 H 0.16 4.42 5.84 -2.91 -0.02 4.40 16
37 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16
Total: -1.00 -68.41 332.98 4.83 -63.58
By element:
Atomic # 1 Polarization: 4.92 SS G_CDS: 1.14 Total: 6.06 kcal
Atomic # 6 Polarization: 18.77 SS G_CDS: 4.36 Total: 23.12 kcal
Atomic # 7 Polarization: -105.30 SS G_CDS: -4.04 Total: -109.33 kcal
Atomic # 8 Polarization: -24.54 SS G_CDS: -0.07 Total: -24.61 kcal
Atomic # 9 Polarization: -6.13 SS G_CDS: 1.49 Total: -4.64 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal
Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal
Total: -68.41 4.83 -63.58 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032595670.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.240 kcal
(2) G-P(sol) polarization free energy of solvation -68.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.173 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.342 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds