Wall clock time and date at job start Sat Apr 11 2020 06:27:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31634 * 1
3 3 Si 1.86799 * 119.99884 * 2 1
4 4 H 1.48501 * 109.46757 * 179.97438 * 3 2 1
5 5 H 1.48492 * 109.47209 * 299.99751 * 3 2 1
6 6 H 1.48496 * 109.47307 * 60.00104 * 3 2 1
7 7 C 1.38795 * 119.99666 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99923 * 180.02562 * 7 2 1
9 9 S 1.76199 * 120.00231 * 359.97438 * 7 2 1
10 10 C 1.81006 * 99.99857 * 180.02562 * 9 7 2
11 11 C 1.50700 * 109.46951 * 180.02562 * 10 9 7
12 12 O 1.21283 * 120.00112 * 359.97438 * 11 10 9
13 13 N 1.34779 * 120.00262 * 180.02562 * 11 10 9
14 14 C 1.46495 * 120.00375 * 174.97499 * 13 11 10
15 15 C 1.53009 * 115.54715 * 65.40694 * 14 13 11
16 16 N 1.46505 * 109.46831 * 85.77478 * 15 14 13
17 17 C 1.34771 * 119.99611 * 174.96827 * 16 15 14
18 18 O 1.21626 * 120.00382 * 0.02562 * 17 16 15
19 19 C 1.47175 * 120.00217 * 180.02562 * 17 16 15
20 20 C 1.38237 * 128.47966 * 179.70201 * 19 17 16
21 21 N 1.31245 * 111.88791 * 179.84525 * 20 19 17
22 22 N 1.27329 * 120.03679 * 0.49276 * 21 20 19
23 23 S 1.56633 * 109.74277 * 359.71449 * 22 21 20
24 24 C 1.52993 * 117.50158 * 279.74001 * 14 13 11
25 25 C 1.52997 * 117.50163 * 211.07800 * 14 13 11
26 26 H 0.97004 * 119.99765 * 0.02562 * 1 2 3
27 27 H 1.08999 * 109.47107 * 60.00134 * 10 9 7
28 28 H 1.08998 * 109.46978 * 299.99829 * 10 9 7
29 29 H 0.97002 * 119.99687 * 354.97747 * 13 11 10
30 30 H 1.08998 * 109.46869 * 205.77663 * 15 14 13
31 31 H 1.08996 * 109.47327 * 325.77878 * 15 14 13
32 32 H 0.96999 * 119.99903 * 354.97382 * 16 15 14
33 33 H 1.08003 * 124.05656 * 0.02562 * 20 19 17
34 34 H 1.09005 * 117.49813 * 359.97438 * 24 14 13
35 35 H 1.08997 * 117.50305 * 145.02362 * 24 14 13
36 36 H 1.08999 * 117.49998 * 214.98193 * 25 14 13
37 37 H 1.09000 * 117.49970 * 359.97438 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3964 1.2125
7 6 2.0102 -1.2020 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 16 1.1292 -2.7280 -0.0005
10 6 2.5158 -3.8914 -0.0005
11 6 1.9873 -5.3027 -0.0012
12 8 0.7910 -5.5023 -0.0011
13 7 2.8440 -6.3432 -0.0008
14 6 2.3340 -7.7120 0.1097
15 6 1.4830 -8.1961 -1.0662
16 7 2.3566 -8.7331 -2.1126
17 6 1.8213 -9.3125 -3.2054
18 8 0.6132 -9.3890 -3.3231
19 6 2.6987 -9.8525 -4.2564
20 6 2.3428 -10.4810 -5.4350
21 7 3.3935 -10.8313 -6.1393
22 7 4.5642 -10.5879 -5.7017
23 16 4.4710 -9.8628 -4.3164
24 6 1.9628 -8.2172 1.5054
25 6 3.2217 -8.7423 0.8107
26 1 -0.4850 0.8401 -0.0004
27 1 3.1244 -3.7314 0.8894
28 1 3.1244 -3.7314 -0.8905
29 1 3.7984 -6.1856 -0.0736
30 1 0.8024 -8.9762 -0.7252
31 1 0.9077 -7.3613 -1.4663
32 1 3.3200 -8.6718 -2.0187
33 1 1.3226 -10.6596 -5.7411
34 1 2.0986 -7.5311 2.3415
35 1 1.1128 -8.8947 1.5859
36 1 3.1992 -9.7650 0.4344
37 1 4.1854 -8.4018 1.1893
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001722057368.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:53
Heat of formation + Delta-G solvation = 33.516011 kcal
Electronic energy + Delta-G solvation = -23710.393604 eV
Core-core repulsion = 19936.039345 eV
Total energy + Delta-G solvation = -3774.354259 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 342.061 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.29046 -40.34550 -39.39777 -37.47092 -34.63105 -32.88849 -32.56533 -32.47151
-29.21599 -28.65994 -26.86420 -25.53345 -23.38902 -22.89800 -21.53706 -21.03381
-19.88050 -19.62591 -18.06547 -17.90652 -16.73566 -16.53829 -16.32118 -16.16329
-15.49794 -15.23116 -15.06916 -14.84715 -14.65479 -14.38163 -14.08133 -13.40806
-13.16897 -13.02682 -12.93724 -12.55500 -12.43330 -12.08418 -11.87913 -11.18513
-11.10491 -11.06916 -10.89588 -10.80354 -10.74251 -10.56422 -10.44562 -10.32993
-9.85896 -9.66418 -9.34237 -9.13486 -9.07440 -8.29283 -6.55500 -6.26309
-3.97370 -0.74825 0.31187 0.99213 1.51884 2.42667 2.56535 2.79833
2.92774 3.18357 3.22184 3.27642 3.40756 3.54855 3.57825 4.15060
4.16303 4.20427 4.26937 4.48593 4.59851 4.97020 5.09177 5.12635
5.21169 5.24429 5.33820 5.59577 5.61495 5.74575 5.77559 5.80189
5.88332 6.04829 6.49675 6.87627 7.16498 7.52419 7.55590 7.60364
8.30591 8.47774 9.19259 10.81094
Molecular weight = 342.06amu
Principal moments of inertia in cm(-1)
A = 0.013944 B = 0.002341 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2007.541613 B =11957.303494 C =12851.931153
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.536 4.536
8 H 0.073 0.927
9 S -0.058 6.058
10 C -0.153 4.153
11 C 0.535 3.465
12 O -0.504 6.504
13 N -0.711 5.711
14 C 0.086 3.914
15 C 0.149 3.851
16 N -0.715 5.715
17 C 0.599 3.401
18 O -0.509 6.509
19 C -0.284 4.284
20 C 0.075 3.925
21 N -0.250 5.250
22 N -0.254 5.254
23 S 0.419 5.581
24 C -0.154 4.154
25 C -0.171 4.171
26 H 0.268 0.732
27 H 0.090 0.910
28 H 0.089 0.911
29 H 0.401 0.599
30 H 0.087 0.913
31 H 0.096 0.904
32 H 0.399 0.601
33 H 0.218 0.782
34 H 0.105 0.895
35 H 0.105 0.895
36 H 0.105 0.895
37 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.834 -22.647 -2.495 25.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.502 5.502
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.196 1.196
5 H -0.205 1.205
6 H -0.205 1.205
7 C -0.684 4.684
8 H 0.091 0.909
9 S 0.169 5.831
10 C -0.304 4.304
11 C 0.321 3.679
12 O -0.377 6.377
13 N -0.366 5.366
14 C -0.003 4.003
15 C 0.026 3.974
16 N -0.367 5.367
17 C 0.382 3.618
18 O -0.385 6.385
19 C -0.425 4.425
20 C -0.091 4.091
21 N -0.114 5.114
22 N -0.235 5.235
23 S 0.554 5.446
24 C -0.193 4.193
25 C -0.209 4.209
26 H 0.078 0.922
27 H 0.109 0.891
28 H 0.107 0.893
29 H 0.236 0.764
30 H 0.105 0.895
31 H 0.114 0.886
32 H 0.233 0.767
33 H 0.234 0.766
34 H 0.123 0.877
35 H 0.124 0.876
36 H 0.124 0.876
37 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 10.647 -23.126 -3.062 25.643
hybrid contribution 1.454 1.547 0.110 2.126
sum 12.101 -21.579 -2.953 24.916
Atomic orbital electron populations
1.70026 1.05950 1.27419 1.46786 1.24999 0.95037 0.99072 0.94500
0.86112 0.79550 0.81862 0.77945 1.19629 1.20540 1.20543 1.22892
0.94906 0.91608 1.59022 0.90887 1.85443 1.04623 0.96332 1.96718
1.23536 1.06769 0.95157 1.04940 1.20388 0.86591 0.86030 0.74866
1.90718 1.15211 1.85344 1.46385 1.45450 1.10031 1.03350 1.77740
1.20623 1.02281 0.83437 0.93937 1.21231 0.91202 0.99746 0.85247
1.45873 1.10571 1.59869 1.20360 1.16445 0.86689 0.78262 0.80401
1.90904 1.13242 1.56779 1.77560 1.28086 0.99274 1.12029 1.03104
1.24523 1.00868 0.94740 0.88995 1.70713 0.93122 1.19169 1.28421
1.78911 1.18852 1.16559 1.09221 1.82574 1.00710 1.41879 1.19437
1.23373 0.98449 1.02772 0.94725 1.23361 0.96267 0.98119 1.03138
0.92180 0.89139 0.89265 0.76406 0.89531 0.88585 0.76704 0.76601
0.87662 0.87623 0.87625 0.87719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16
2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16
3 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16
4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16
5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
7 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16
8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16
10 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16
11 C 0.53 8.90 7.66 -10.98 -0.08 8.82 16
12 O -0.50 -10.42 14.64 5.56 0.08 -10.34 16
13 N -0.71 -7.74 5.45 -47.61 -0.26 -8.00 16
14 C 0.09 0.80 1.79 -131.82 -0.24 0.56 16
15 C 0.15 1.60 5.63 -4.03 -0.02 1.57 16
16 N -0.71 -6.01 5.44 -61.46 -0.33 -6.35 16
17 C 0.60 6.15 7.80 -12.63 -0.10 6.05 16
18 O -0.51 -7.18 16.98 5.25 0.09 -7.10 16
19 C -0.28 -2.34 6.81 -35.95 -0.25 -2.59 16
20 C 0.08 0.64 11.55 -17.80 -0.21 0.43 16
21 N -0.25 -2.48 11.54 30.36 0.35 -2.13 16
22 N -0.25 -2.38 12.51 60.35 0.75 -1.62 16
23 S 0.42 2.59 23.05 -107.50 -2.48 0.12 16
24 C -0.15 -1.33 10.11 -26.70 -0.27 -1.60 16
25 C -0.17 -0.99 9.95 -26.70 -0.27 -1.25 16
26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
27 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16
28 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16
29 H 0.40 3.10 8.83 -40.82 -0.36 2.74 16
30 H 0.09 0.90 7.89 -51.93 -0.41 0.49 16
31 H 0.10 1.42 6.84 -51.93 -0.35 1.06 16
32 H 0.40 2.22 7.80 -40.82 -0.32 1.90 16
33 H 0.22 1.40 8.06 -52.48 -0.42 0.98 16
34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16
35 H 0.11 0.84 8.05 -51.93 -0.42 0.42 16
36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 361.02 15.07 5.44 5.44
Total: -1.00 -36.50 361.02 -7.81 -44.31
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: -3.94 Total: 1.66 kcal
Atomic # 6 Polarization: -2.25 SS G_CDS: -1.01 Total: -3.26 kcal
Atomic # 7 Polarization: -44.36 SS G_CDS: 1.24 Total: -43.12 kcal
Atomic # 8 Polarization: -17.61 SS G_CDS: 0.17 Total: -17.44 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal
Atomic # 16 Polarization: 1.08 SS G_CDS: -4.69 Total: -3.61 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -36.50 -7.81 -44.31 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001722057368.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.825 kcal
(2) G-P(sol) polarization free energy of solvation -36.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.323 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.516 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds