Wall clock time and date at job start Sat Apr 11 2020 06:27:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31634 * 1
3 3 Si 1.86799 * 119.99884 * 2 1
4 4 H 1.48501 * 109.46757 * 179.97438 * 3 2 1
5 5 H 1.48492 * 109.47209 * 299.99751 * 3 2 1
6 6 H 1.48496 * 109.47307 * 60.00104 * 3 2 1
7 7 C 1.38795 * 119.99666 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99923 * 180.02562 * 7 2 1
9 9 S 1.76199 * 120.00231 * 359.97438 * 7 2 1
10 10 C 1.81006 * 99.99857 * 180.02562 * 9 7 2
11 11 C 1.50700 * 109.46951 * 180.02562 * 10 9 7
12 12 O 1.21283 * 120.00112 * 359.97438 * 11 10 9
13 13 N 1.34779 * 120.00262 * 180.02562 * 11 10 9
14 14 C 1.46495 * 120.00375 * 174.97499 * 13 11 10
15 15 C 1.53009 * 115.54715 * 65.40694 * 14 13 11
16 16 N 1.46505 * 109.46831 * 85.77478 * 15 14 13
17 17 C 1.34771 * 119.99611 * 174.96827 * 16 15 14
18 18 O 1.21626 * 120.00382 * 0.02562 * 17 16 15
19 19 C 1.47175 * 120.00217 * 180.02562 * 17 16 15
20 20 C 1.38237 * 128.47966 * 179.70201 * 19 17 16
21 21 N 1.31245 * 111.88791 * 179.84525 * 20 19 17
22 22 N 1.27329 * 120.03679 * 0.49276 * 21 20 19
23 23 S 1.56633 * 109.74277 * 359.71449 * 22 21 20
24 24 C 1.52993 * 117.50158 * 279.74001 * 14 13 11
25 25 C 1.52997 * 117.50163 * 211.07800 * 14 13 11
26 26 H 0.97004 * 119.99765 * 0.02562 * 1 2 3
27 27 H 1.08999 * 109.47107 * 60.00134 * 10 9 7
28 28 H 1.08998 * 109.46978 * 299.99829 * 10 9 7
29 29 H 0.97002 * 119.99687 * 354.97747 * 13 11 10
30 30 H 1.08998 * 109.46869 * 205.77663 * 15 14 13
31 31 H 1.08996 * 109.47327 * 325.77878 * 15 14 13
32 32 H 0.96999 * 119.99903 * 354.97382 * 16 15 14
33 33 H 1.08003 * 124.05656 * 0.02562 * 20 19 17
34 34 H 1.09005 * 117.49813 * 359.97438 * 24 14 13
35 35 H 1.08997 * 117.50305 * 145.02362 * 24 14 13
36 36 H 1.08999 * 117.49998 * 214.98193 * 25 14 13
37 37 H 1.09000 * 117.49970 * 359.97438 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3964 1.2125
7 6 2.0102 -1.2020 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 16 1.1292 -2.7280 -0.0005
10 6 2.5158 -3.8914 -0.0005
11 6 1.9873 -5.3027 -0.0012
12 8 0.7910 -5.5023 -0.0011
13 7 2.8440 -6.3432 -0.0008
14 6 2.3340 -7.7120 0.1097
15 6 1.4830 -8.1961 -1.0662
16 7 2.3566 -8.7331 -2.1126
17 6 1.8213 -9.3125 -3.2054
18 8 0.6132 -9.3890 -3.3231
19 6 2.6987 -9.8525 -4.2564
20 6 2.3428 -10.4810 -5.4350
21 7 3.3935 -10.8313 -6.1393
22 7 4.5642 -10.5879 -5.7017
23 16 4.4710 -9.8628 -4.3164
24 6 1.9628 -8.2172 1.5054
25 6 3.2217 -8.7423 0.8107
26 1 -0.4850 0.8401 -0.0004
27 1 3.1244 -3.7314 0.8894
28 1 3.1244 -3.7314 -0.8905
29 1 3.7984 -6.1856 -0.0736
30 1 0.8024 -8.9762 -0.7252
31 1 0.9077 -7.3613 -1.4663
32 1 3.3200 -8.6718 -2.0187
33 1 1.3226 -10.6596 -5.7411
34 1 2.0986 -7.5311 2.3415
35 1 1.1128 -8.8947 1.5859
36 1 3.1992 -9.7650 0.4344
37 1 4.1854 -8.4018 1.1893
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001722057368.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:27:52
Heat of formation + Delta-G solvation = 4.044062 kcal
Electronic energy + Delta-G solvation = -23711.671603 eV
Core-core repulsion = 19936.039345 eV
Total energy + Delta-G solvation = -3775.632258 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 342.061 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.96450 -41.26584 -40.40890 -38.48305 -35.49037 -34.58518 -33.99233 -33.23410
-30.55579 -29.48217 -27.71902 -27.55457 -24.07128 -23.61625 -22.52903 -21.80664
-20.84904 -20.29342 -19.83962 -18.81100 -17.80858 -17.54967 -17.13145 -17.01899
-16.88029 -16.50754 -16.25850 -15.91866 -15.79009 -15.48552 -15.06951 -14.78549
-14.54546 -14.00790 -13.86254 -13.67675 -13.42753 -13.15433 -13.03669 -12.92099
-12.59347 -12.41525 -11.95133 -11.74180 -11.65899 -11.42059 -11.24732 -11.21864
-11.15983 -10.95538 -10.82796 -10.31494 -10.24965 -10.09160 -8.65701 -8.34840
-6.12234 -1.39743 -0.28419 0.38844 0.83828 1.26601 1.41185 1.46883
1.57237 1.62275 1.67588 1.79468 2.15287 2.27685 2.76443 2.93206
2.99684 3.30601 3.46277 3.52422 3.62760 3.80845 3.89390 4.00680
4.32595 4.46603 4.52548 4.54649 4.58434 4.76470 4.82734 5.01910
5.06760 5.21963 5.42276 5.53850 6.17853 6.19982 6.52178 6.53513
6.86199 7.06982 7.28841 8.74435
Molecular weight = 342.06amu
Principal moments of inertia in cm(-1)
A = 0.013944 B = 0.002341 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2007.541613 B =11957.303494 C =12851.931153
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.012 3.988
3 Si 0.998 3.002
4 H -0.255 1.255
5 H -0.276 1.276
6 H -0.275 1.275
7 C -0.543 4.543
8 H 0.084 0.916
9 S -0.153 6.153
10 C -0.129 4.129
11 C 0.537 3.463
12 O -0.553 6.553
13 N -0.682 5.682
14 C 0.061 3.939
15 C 0.157 3.843
16 N -0.698 5.698
17 C 0.602 3.398
18 O -0.556 6.556
19 C -0.305 4.305
20 C 0.076 3.924
21 N -0.277 5.277
22 N -0.289 5.289
23 S 0.520 5.480
24 C -0.172 4.172
25 C -0.122 4.122
26 H 0.270 0.730
27 H 0.111 0.889
28 H 0.109 0.891
29 H 0.421 0.579
30 H 0.087 0.913
31 H 0.050 0.950
32 H 0.415 0.585
33 H 0.226 0.774
34 H 0.094 0.906
35 H 0.107 0.893
36 H 0.129 0.871
37 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.791 -23.484 -1.849 28.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.193 4.193
3 Si 0.820 3.180
4 H -0.178 1.178
5 H -0.201 1.201
6 H -0.200 1.200
7 C -0.691 4.691
8 H 0.102 0.898
9 S 0.074 5.926
10 C -0.280 4.280
11 C 0.323 3.677
12 O -0.429 6.429
13 N -0.337 5.337
14 C -0.027 4.027
15 C 0.032 3.968
16 N -0.351 5.351
17 C 0.386 3.614
18 O -0.435 6.435
19 C -0.446 4.446
20 C -0.092 4.092
21 N -0.139 5.139
22 N -0.270 5.270
23 S 0.654 5.346
24 C -0.210 4.210
25 C -0.159 4.159
26 H 0.079 0.921
27 H 0.129 0.871
28 H 0.127 0.873
29 H 0.260 0.740
30 H 0.105 0.895
31 H 0.068 0.932
32 H 0.253 0.747
33 H 0.243 0.757
34 H 0.113 0.887
35 H 0.125 0.875
36 H 0.148 0.852
37 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 14.712 -24.003 -2.415 28.257
hybrid contribution 0.327 1.695 -0.034 1.726
sum 15.040 -22.309 -2.449 27.016
Atomic orbital electron populations
1.70196 1.07994 1.28491 1.48185 1.26129 0.95946 1.03364 0.93861
0.84915 0.78705 0.76417 0.77981 1.17849 1.20145 1.20017 1.23230
0.95332 0.91993 1.58542 0.89831 1.85641 1.10641 0.99312 1.97035
1.23371 1.03478 0.94375 1.06804 1.20074 0.86357 0.86426 0.74881
1.90715 1.17355 1.85863 1.48998 1.45057 1.10306 1.02933 1.75381
1.20707 1.05023 0.83082 0.93913 1.20942 0.91641 0.98198 0.85984
1.45683 1.11187 1.58804 1.19385 1.16657 0.86299 0.77676 0.80772
1.90883 1.15380 1.58656 1.78550 1.27903 1.01050 1.12928 1.02723
1.24742 1.01242 0.94243 0.88971 1.70786 0.93326 1.20475 1.29356
1.78635 1.19137 1.17859 1.11395 1.82112 0.97536 1.38504 1.16405
1.23444 1.00802 1.03201 0.93601 1.23560 0.95801 0.97762 0.98777
0.92069 0.87065 0.87308 0.74026 0.89524 0.93175 0.74736 0.75734
0.88715 0.87456 0.85241 0.85130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.64 13.22 21.65 0.29 -55.36 16
2 C 0.01 0.65 5.49 84.86 0.47 1.12 16
3 Si 1.00 42.94 29.55 68.60 2.03 44.97 16
4 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16
5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16
6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16
7 C -0.54 -30.28 9.50 67.95 0.65 -29.63 16
8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16
9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16
10 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16
11 C 0.54 17.63 7.66 87.66 0.67 18.31 16
12 O -0.55 -23.71 14.64 -3.04 -0.04 -23.76 16
13 N -0.68 -13.31 5.45 -422.93 -2.31 -15.61 16
14 C 0.06 1.00 1.79 3.60 0.01 1.01 16
15 C 0.16 3.29 5.63 86.38 0.49 3.77 16
16 N -0.70 -10.56 5.44 -466.61 -2.54 -13.10 16
17 C 0.60 11.97 7.80 86.59 0.68 12.65 16
18 O -0.56 -16.17 16.98 -4.11 -0.07 -16.24 16
19 C -0.30 -4.62 6.81 24.62 0.17 -4.45 16
20 C 0.08 1.24 11.55 84.78 0.98 2.22 16
21 N -0.28 -5.26 11.54 -57.87 -0.67 -5.93 16
22 N -0.29 -4.91 12.51 37.02 0.46 -4.44 16
23 S 0.52 4.93 23.05 -56.49 -1.30 3.63 16
24 C -0.17 -2.61 10.11 30.62 0.31 -2.30 16
25 C -0.12 -0.85 9.95 30.62 0.30 -0.54 16
26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
27 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16
28 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16
29 H 0.42 4.85 8.83 -92.71 -0.82 4.03 16
30 H 0.09 1.81 7.89 -2.39 -0.02 1.79 16
31 H 0.05 1.56 6.84 -2.39 -0.02 1.54 16
32 H 0.42 3.20 7.80 -92.71 -0.72 2.48 16
33 H 0.23 2.98 8.06 -2.91 -0.02 2.96 16
34 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16
35 H 0.11 1.58 8.05 -2.39 -0.02 1.56 16
36 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16
37 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16
Total: -1.00 -85.35 361.02 -0.55 -85.90
By element:
Atomic # 1 Polarization: 11.89 SS G_CDS: -0.39 Total: 11.50 kcal
Atomic # 6 Polarization: -7.26 SS G_CDS: 5.15 Total: -2.11 kcal
Atomic # 7 Polarization: -89.69 SS G_CDS: -4.76 Total: -94.45 kcal
Atomic # 8 Polarization: -39.88 SS G_CDS: -0.11 Total: -40.00 kcal
Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal
Atomic # 16 Polarization: -3.35 SS G_CDS: -2.46 Total: -5.81 kcal
Total: -85.35 -0.55 -85.90 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001722057368.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.947 kcal
(2) G-P(sol) polarization free energy of solvation -85.349 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.598 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds