Wall clock time and date at job start Sat Apr 11 2020 06:29:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42893 * 113.41365 * 2 1
4 4 C 1.53491 * 114.20414 * 133.20598 * 2 1 3
5 5 N 1.47064 * 87.98691 * 139.65453 * 4 2 1
6 6 S 1.65601 * 136.05868 * 152.84314 * 5 4 2
7 7 O 1.42097 * 104.27967 * 333.92715 * 6 5 4
8 8 O 1.42096 * 104.27550 * 206.06559 * 6 5 4
9 9 C 1.81409 * 104.44945 * 90.00000 * 6 5 4
10 10 C 1.52999 * 109.46821 * 180.02562 * 9 6 5
11 11 C 1.53006 * 109.46626 * 179.97438 * 10 9 6
12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9
13 13 O 1.42098 * 110.54236 * 291.62853 * 12 11 10
14 14 O 1.42105 * 110.54439 * 68.37411 * 12 11 10
15 15 N 1.65591 * 104.45009 * 179.97438 * 12 11 10
16 16 C 1.36942 * 119.99794 * 65.00493 * 15 12 11
17 17 H 1.08000 * 120.00236 * 359.97438 * 16 15 12
18 18 C 1.38813 * 119.99720 * 179.97438 * 16 15 12
19 19 N 1.31618 * 120.00462 * 359.97438 * 18 16 15
20 20 Si 1.86808 * 119.99767 * 179.97438 * 18 16 15
21 21 H 1.48500 * 109.46654 * 90.00125 * 20 18 16
22 22 H 1.48500 * 109.46971 * 209.99985 * 20 18 16
23 23 H 1.48500 * 109.46859 * 330.00378 * 20 18 16
24 24 C 1.47067 * 87.88480 * 333.09702 * 5 4 2
25 25 H 1.08997 * 109.46720 * 286.79927 * 1 2 3
26 26 H 1.09003 * 109.46631 * 46.79688 * 1 2 3
27 27 H 1.09001 * 109.47059 * 166.79385 * 1 2 3
28 28 H 0.96701 * 114.00404 * 313.20326 * 3 2 1
29 29 H 1.09003 * 113.46941 * 24.87152 * 4 2 1
30 30 H 1.09004 * 113.51684 * 254.44103 * 4 2 1
31 31 H 1.08993 * 109.47018 * 59.99567 * 9 6 5
32 32 H 1.09000 * 109.46792 * 299.99857 * 9 6 5
33 33 H 1.08993 * 109.47839 * 59.99872 * 10 9 6
34 34 H 1.09000 * 109.47160 * 299.99434 * 10 9 6
35 35 H 1.09000 * 109.47050 * 299.99699 * 11 10 9
36 36 H 1.09001 * 109.46801 * 59.99811 * 11 10 9
37 37 H 0.97001 * 120.00742 * 244.99520 * 15 12 11
38 38 H 0.96998 * 120.00118 * 179.97438 * 19 18 16
39 39 H 1.09003 * 113.46960 * 141.67759 * 24 5 4
40 40 H 1.09002 * 113.47125 * 272.12238 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0979 1.3113 0.0000
4 6 2.1594 -0.9585 1.0204
5 7 3.1599 -1.3053 -0.0001
6 16 4.7247 -1.8472 -0.0001
7 8 5.2541 -1.3896 1.2366
8 8 5.2537 -1.3905 -1.2373
9 6 4.5776 -3.6553 0.0006
10 6 5.9740 -4.2806 0.0013
11 6 5.8499 -5.8056 0.0025
12 16 7.5055 -6.5469 0.0025
13 8 8.1606 -6.3040 -1.2348
14 8 8.1614 -6.3022 1.2391
15 7 7.2272 -8.1793 0.0045
16 6 6.6177 -8.7713 -1.0694
17 1 6.3180 -8.1735 -1.9175
18 6 6.3849 -10.1398 -1.0679
19 7 6.7505 -10.8684 -0.0346
20 14 5.5527 -10.9472 -2.5325
21 1 6.5826 -11.3745 -3.5134
22 1 4.7842 -12.1322 -2.0739
23 1 4.6301 -9.9768 -3.1746
24 6 2.1613 -0.9530 -1.0206
25 1 -0.3633 0.2970 0.9838
26 1 -0.3633 0.7036 -0.7491
27 1 -0.3633 -1.0005 -0.2348
28 1 1.6992 1.9126 -0.6439
29 1 1.5100 -1.7907 1.2922
30 1 2.5822 -0.4530 1.8887
31 1 4.0359 -3.9761 -0.8891
32 1 4.0361 -3.9754 0.8908
33 1 6.5154 -3.9598 0.8912
34 1 6.5159 -3.9605 -0.8887
35 1 5.3082 -6.1253 0.8926
36 1 5.3084 -6.1267 -0.8874
37 1 7.4961 -8.7163 0.7663
38 1 6.5875 -11.8246 -0.0334
39 1 2.5855 -0.4420 -1.8849
40 1 1.5123 -1.7837 -1.2981
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000349470180.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:59
Heat of formation + Delta-G solvation = -154.432476 kcal
Electronic energy + Delta-G solvation = -25828.524438 eV
Core-core repulsion = 21706.418450 eV
Total energy + Delta-G solvation = -4122.105988 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 342.084 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-40.45338 -37.18057 -36.04711 -35.95687 -35.72287 -34.98323 -34.79694 -34.67586
-31.06586 -30.95414 -27.94123 -26.57965 -26.22399 -24.62347 -22.18703 -20.91718
-19.05583 -18.37327 -18.18182 -17.77657 -17.07423 -16.93055 -16.54315 -16.37583
-15.70143 -15.35448 -15.12706 -14.81778 -14.70591 -14.54197 -14.36978 -13.66752
-13.55557 -13.18837 -12.94033 -12.90805 -12.55083 -12.35821 -12.29215 -12.18736
-12.12776 -12.03709 -12.00090 -11.39008 -11.18361 -11.05532 -11.01559 -10.98892
-10.91405 -10.89113 -10.64423 -10.35773 -10.34999 -10.07997 -9.77813 -9.35365
-8.35651 -6.59090 -3.98491 0.02247 1.32927 2.34652 3.10697 3.16278
3.16687 3.40145 3.68824 3.72423 3.88354 3.91979 4.22134 4.25141
4.37982 4.49079 4.51615 4.72028 4.90826 4.92458 5.00472 5.04126
5.07059 5.12191 5.16034 5.26486 5.34076 5.45162 5.50753 5.54471
5.61761 5.62294 6.03395 6.04585 6.24593 6.91275 7.18005 7.37106
8.56523 8.68662 9.12821 10.56176
Molecular weight = 342.08amu
Principal moments of inertia in cm(-1)
A = 0.017323 B = 0.002623 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.984909 B =10673.876047 C =11632.198560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.093 3.907
3 O -0.532 6.532
4 C 0.133 3.867
5 N -1.036 6.036
6 S 2.628 3.372
7 O -0.946 6.946
8 O -0.947 6.947
9 C -0.618 4.618
10 C -0.100 4.100
11 C -0.649 4.649
12 S 2.538 3.462
13 O -0.969 6.969
14 O -1.001 7.001
15 N -0.947 5.947
16 C -0.273 4.273
17 H 0.105 0.895
18 C 0.029 3.971
19 N -0.871 5.871
20 Si 0.926 3.074
21 H -0.274 1.274
22 H -0.281 1.281
23 H -0.268 1.268
24 C 0.096 3.904
25 H 0.071 0.929
26 H 0.066 0.934
27 H 0.075 0.925
28 H 0.382 0.618
29 H 0.098 0.902
30 H 0.091 0.909
31 H 0.134 0.866
32 H 0.133 0.867
33 H 0.086 0.914
34 H 0.087 0.913
35 H 0.119 0.881
36 H 0.124 0.876
37 H 0.411 0.589
38 H 0.276 0.724
39 H 0.087 0.913
40 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.464 17.071 -0.496 24.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.049 3.951
3 O -0.338 6.338
4 C 0.007 3.993
5 N -0.873 5.873
6 S 2.724 3.276
7 O -0.937 6.937
8 O -0.937 6.937
9 C -0.749 4.749
10 C -0.141 4.141
11 C -0.771 4.771
12 S 2.630 3.370
13 O -0.959 6.959
14 O -0.989 6.989
15 N -0.698 5.698
16 C -0.414 4.414
17 H 0.123 0.877
18 C -0.179 4.179
19 N -0.512 5.512
20 Si 0.752 3.248
21 H -0.199 1.199
22 H -0.207 1.207
23 H -0.193 1.193
24 C -0.030 4.030
25 H 0.090 0.910
26 H 0.085 0.915
27 H 0.094 0.906
28 H 0.230 0.770
29 H 0.116 0.884
30 H 0.109 0.891
31 H 0.152 0.848
32 H 0.152 0.848
33 H 0.105 0.895
34 H 0.105 0.895
35 H 0.138 0.862
36 H 0.142 0.858
37 H 0.246 0.754
38 H 0.086 0.914
39 H 0.105 0.895
40 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -15.288 17.815 -0.050 23.476
hybrid contribution -1.922 -1.389 -0.765 2.492
sum -17.211 16.427 -0.814 23.806
Atomic orbital electron populations
1.22244 0.93333 1.03551 1.03453 1.22428 0.91816 0.83885 0.97007
1.86574 1.63478 1.20774 1.62927 1.22669 0.88109 0.95607 0.92922
1.60134 1.28464 1.81701 1.17013 1.04682 0.71440 0.77117 0.74349
1.93595 1.75642 1.79073 1.45345 1.93591 1.75673 1.79141 1.45335
1.30696 1.06545 1.25745 1.11887 1.20968 0.93571 0.95319 1.04195
1.31027 1.32750 1.02964 1.10324 1.09528 0.79629 0.74195 0.73667
1.93486 1.72400 1.85059 1.44913 1.93425 1.74853 1.85153 1.45508
1.51812 1.70265 1.21822 1.25883 1.19404 1.35301 0.92570 0.94132
0.87741 1.25318 0.97506 0.96668 0.98439 1.69699 1.44395 1.07474
1.29645 0.85935 0.79275 0.78944 0.80621 1.19943 1.20655 1.19293
1.23285 0.88805 0.97597 0.93325 0.90963 0.91460 0.90629 0.76970
0.88375 0.89072 0.84803 0.84849 0.89527 0.89455 0.86223 0.85792
0.75390 0.91375 0.89480 0.89007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 31.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.51 9.54 37.16 0.35 -0.16 16
2 C 0.09 0.58 2.03 -90.24 -0.18 0.39 16
3 O -0.53 -4.18 13.55 -35.23 -0.48 -4.66 16
4 C 0.13 1.00 8.13 -8.51 -0.07 0.93 16
5 N -1.04 -10.32 4.10 -125.32 -0.51 -10.84 16
6 S 2.63 34.66 5.96 -107.50 -0.64 34.02 16
7 O -0.95 -15.47 18.07 -57.54 -1.04 -16.51 16
8 O -0.95 -15.37 18.07 -57.54 -1.04 -16.41 16
9 C -0.62 -7.20 6.18 37.16 0.23 -6.97 16
10 C -0.10 -1.54 5.23 -26.73 -0.14 -1.68 16
11 C -0.65 -10.87 6.01 37.16 0.22 -10.64 16
12 S 2.54 54.59 5.42 -107.50 -0.58 54.01 16
13 O -0.97 -23.58 17.76 -57.54 -1.02 -24.60 16
14 O -1.00 -23.63 18.08 -57.54 -1.04 -24.67 16
15 N -0.95 -22.40 5.65 31.50 0.18 -22.23 16
16 C -0.27 -6.68 9.50 -15.06 -0.14 -6.83 16
17 H 0.10 2.39 7.82 -52.49 -0.41 1.98 16
18 C 0.03 0.72 5.50 -17.43 -0.10 0.62 16
19 N -0.87 -22.54 13.06 55.49 0.72 -21.82 16
20 Si 0.93 18.91 29.55 -169.99 -5.02 13.88 16
21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
23 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16
24 C 0.10 0.67 8.09 -8.64 -0.07 0.60 16
25 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
26 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16
27 H 0.07 0.16 7.90 -51.93 -0.41 -0.25 16
28 H 0.38 1.24 9.04 45.56 0.41 1.65 16
29 H 0.10 0.43 8.10 -51.93 -0.42 0.01 16
30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16
32 H 0.13 1.26 8.14 -51.92 -0.42 0.83 16
33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
35 H 0.12 1.81 8.14 -51.92 -0.42 1.38 16
36 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16
37 H 0.41 9.99 7.98 -34.47 -0.28 9.71 16
38 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16
39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.09 0.39 7.94 -51.93 -0.41 -0.02 16
LS Contribution 369.30 15.07 5.57 5.57
Total: -1.00 -37.81 369.30 -9.69 -47.49
By element:
Atomic # 1 Polarization: 15.36 SS G_CDS: -4.88 Total: 10.48 kcal
Atomic # 6 Polarization: -23.83 SS G_CDS: 0.11 Total: -23.73 kcal
Atomic # 7 Polarization: -55.27 SS G_CDS: 0.39 Total: -54.88 kcal
Atomic # 8 Polarization: -82.22 SS G_CDS: -4.62 Total: -86.84 kcal
Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal
Atomic # 16 Polarization: 89.25 SS G_CDS: -1.22 Total: 88.03 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -37.81 -9.69 -47.49 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349470180.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.939 kcal
(2) G-P(sol) polarization free energy of solvation -37.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds