Wall clock time and date at job start Sat Apr 11 2020 06:29:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42893 * 113.41365 * 2 1
4 4 C 1.53491 * 114.20414 * 133.20598 * 2 1 3
5 5 N 1.47064 * 87.98691 * 139.65453 * 4 2 1
6 6 S 1.65601 * 136.05868 * 152.84314 * 5 4 2
7 7 O 1.42097 * 104.27967 * 333.92715 * 6 5 4
8 8 O 1.42096 * 104.27550 * 206.06559 * 6 5 4
9 9 C 1.81409 * 104.44945 * 90.00000 * 6 5 4
10 10 C 1.52999 * 109.46821 * 180.02562 * 9 6 5
11 11 C 1.53006 * 109.46626 * 179.97438 * 10 9 6
12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9
13 13 O 1.42098 * 110.54236 * 291.62853 * 12 11 10
14 14 O 1.42105 * 110.54439 * 68.37411 * 12 11 10
15 15 N 1.65591 * 104.45009 * 179.97438 * 12 11 10
16 16 C 1.36942 * 119.99794 * 65.00493 * 15 12 11
17 17 H 1.08000 * 120.00236 * 359.97438 * 16 15 12
18 18 C 1.38813 * 119.99720 * 179.97438 * 16 15 12
19 19 N 1.31618 * 120.00462 * 359.97438 * 18 16 15
20 20 Si 1.86808 * 119.99767 * 179.97438 * 18 16 15
21 21 H 1.48500 * 109.46654 * 90.00125 * 20 18 16
22 22 H 1.48500 * 109.46971 * 209.99985 * 20 18 16
23 23 H 1.48500 * 109.46859 * 330.00378 * 20 18 16
24 24 C 1.47067 * 87.88480 * 333.09702 * 5 4 2
25 25 H 1.08997 * 109.46720 * 286.79927 * 1 2 3
26 26 H 1.09003 * 109.46631 * 46.79688 * 1 2 3
27 27 H 1.09001 * 109.47059 * 166.79385 * 1 2 3
28 28 H 0.96701 * 114.00404 * 313.20326 * 3 2 1
29 29 H 1.09003 * 113.46941 * 24.87152 * 4 2 1
30 30 H 1.09004 * 113.51684 * 254.44103 * 4 2 1
31 31 H 1.08993 * 109.47018 * 59.99567 * 9 6 5
32 32 H 1.09000 * 109.46792 * 299.99857 * 9 6 5
33 33 H 1.08993 * 109.47839 * 59.99872 * 10 9 6
34 34 H 1.09000 * 109.47160 * 299.99434 * 10 9 6
35 35 H 1.09000 * 109.47050 * 299.99699 * 11 10 9
36 36 H 1.09001 * 109.46801 * 59.99811 * 11 10 9
37 37 H 0.97001 * 120.00742 * 244.99520 * 15 12 11
38 38 H 0.96998 * 120.00118 * 179.97438 * 19 18 16
39 39 H 1.09003 * 113.46960 * 141.67759 * 24 5 4
40 40 H 1.09002 * 113.47125 * 272.12238 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0979 1.3113 0.0000
4 6 2.1594 -0.9585 1.0204
5 7 3.1599 -1.3053 -0.0001
6 16 4.7247 -1.8472 -0.0001
7 8 5.2541 -1.3896 1.2366
8 8 5.2537 -1.3905 -1.2373
9 6 4.5776 -3.6553 0.0006
10 6 5.9740 -4.2806 0.0013
11 6 5.8499 -5.8056 0.0025
12 16 7.5055 -6.5469 0.0025
13 8 8.1606 -6.3040 -1.2348
14 8 8.1614 -6.3022 1.2391
15 7 7.2272 -8.1793 0.0045
16 6 6.6177 -8.7713 -1.0694
17 1 6.3180 -8.1735 -1.9175
18 6 6.3849 -10.1398 -1.0679
19 7 6.7505 -10.8684 -0.0346
20 14 5.5527 -10.9472 -2.5325
21 1 6.5826 -11.3745 -3.5134
22 1 4.7842 -12.1322 -2.0739
23 1 4.6301 -9.9768 -3.1746
24 6 2.1613 -0.9530 -1.0206
25 1 -0.3633 0.2970 0.9838
26 1 -0.3633 0.7036 -0.7491
27 1 -0.3633 -1.0005 -0.2348
28 1 1.6992 1.9126 -0.6439
29 1 1.5100 -1.7907 1.2922
30 1 2.5822 -0.4530 1.8887
31 1 4.0359 -3.9761 -0.8891
32 1 4.0361 -3.9754 0.8908
33 1 6.5154 -3.9598 0.8912
34 1 6.5159 -3.9605 -0.8887
35 1 5.3082 -6.1253 0.8926
36 1 5.3084 -6.1267 -0.8874
37 1 7.4961 -8.7163 0.7663
38 1 6.5875 -11.8246 -0.0334
39 1 2.5855 -0.4420 -1.8849
40 1 1.5123 -1.7837 -1.2981
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000349470180.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:58
Heat of formation + Delta-G solvation = -190.526133 kcal
Electronic energy + Delta-G solvation = -25830.089576 eV
Core-core repulsion = 21706.418450 eV
Total energy + Delta-G solvation = -4123.671126 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 342.084 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.96996 -38.29498 -37.92597 -37.16203 -36.81549 -36.42447 -36.28309 -36.14454
-32.81183 -31.36420 -29.21281 -27.09331 -26.77381 -26.40545 -23.42580 -21.43221
-20.19857 -19.98700 -19.84265 -18.67001 -18.51587 -17.74727 -17.67034 -17.40704
-16.85736 -16.73474 -16.31577 -16.13888 -15.88486 -15.45139 -15.32266 -15.18596
-14.38251 -14.12643 -13.80489 -13.74460 -13.67536 -13.59763 -13.33332 -13.28632
-13.20797 -13.09364 -12.99447 -12.98079 -12.81192 -12.74963 -12.51010 -12.34093
-12.20776 -12.09362 -12.02137 -11.81413 -11.47652 -11.29403 -10.83980 -10.16304
-10.04020 -8.29601 -5.86881 -0.95531 -0.41410 1.48881 1.50593 1.53043
1.60577 2.15227 2.52901 2.74348 2.88060 2.97494 3.04858 3.23059
3.34773 3.40044 3.45203 3.63793 3.67005 3.81612 4.07540 4.13548
4.31190 4.49786 4.57235 4.59931 4.63877 4.64819 4.80149 4.88124
4.88380 4.98296 5.05148 5.09997 5.31756 5.52532 5.63464 6.76325
6.89371 7.00383 7.34820 8.88975
Molecular weight = 342.08amu
Principal moments of inertia in cm(-1)
A = 0.017323 B = 0.002623 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.984909 B =10673.876047 C =11632.198560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.095 3.905
3 O -0.563 6.563
4 C 0.122 3.878
5 N -1.045 6.045
6 S 2.635 3.365
7 O -0.989 6.989
8 O -0.988 6.988
9 C -0.604 4.604
10 C -0.126 4.126
11 C -0.609 4.609
12 S 2.586 3.414
13 O -1.001 7.001
14 O -1.016 7.016
15 N -0.984 5.984
16 C -0.316 4.316
17 H 0.113 0.887
18 C -0.023 4.023
19 N -0.932 5.932
20 Si 0.984 3.016
21 H -0.283 1.283
22 H -0.283 1.283
23 H -0.250 1.250
24 C 0.091 3.909
25 H 0.072 0.928
26 H 0.079 0.921
27 H 0.093 0.907
28 H 0.398 0.602
29 H 0.137 0.863
30 H 0.070 0.930
31 H 0.165 0.835
32 H 0.166 0.834
33 H 0.091 0.909
34 H 0.090 0.910
35 H 0.154 0.846
36 H 0.152 0.848
37 H 0.403 0.597
38 H 0.270 0.730
39 H 0.075 0.925
40 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.964 18.873 -1.013 28.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.051 3.949
3 O -0.372 6.372
4 C -0.003 4.003
5 N -0.884 5.884
6 S 2.734 3.266
7 O -0.979 6.979
8 O -0.978 6.978
9 C -0.736 4.736
10 C -0.167 4.167
11 C -0.741 4.741
12 S 2.682 3.318
13 O -0.992 6.992
14 O -1.006 7.006
15 N -0.736 5.736
16 C -0.449 4.449
17 H 0.131 0.869
18 C -0.224 4.224
19 N -0.575 5.575
20 Si 0.808 3.192
21 H -0.209 1.209
22 H -0.208 1.208
23 H -0.173 1.173
24 C -0.034 4.034
25 H 0.091 0.909
26 H 0.097 0.903
27 H 0.112 0.888
28 H 0.250 0.750
29 H 0.155 0.845
30 H 0.089 0.911
31 H 0.183 0.817
32 H 0.183 0.817
33 H 0.110 0.890
34 H 0.109 0.891
35 H 0.172 0.828
36 H 0.171 0.829
37 H 0.238 0.762
38 H 0.080 0.920
39 H 0.094 0.906
40 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -18.752 19.504 -0.641 27.064
hybrid contribution -0.839 -1.372 -0.501 1.685
sum -19.591 18.132 -1.142 26.719
Atomic orbital electron populations
1.22196 0.90357 1.05057 1.04009 1.22533 0.93630 0.82844 0.95877
1.86525 1.64737 1.22049 1.63918 1.23094 0.87795 0.97309 0.92095
1.59856 1.28117 1.81290 1.19153 1.04048 0.72008 0.77878 0.72663
1.93540 1.77358 1.80344 1.46706 1.93537 1.77327 1.80381 1.46584
1.30576 1.04527 1.23368 1.15142 1.21223 0.96640 0.93759 1.05051
1.30523 1.25822 1.03841 1.13874 1.05861 0.79705 0.73706 0.72540
1.93482 1.73931 1.85477 1.46281 1.93449 1.75560 1.85481 1.46157
1.51300 1.73467 1.22464 1.26361 1.19567 1.36154 0.93316 0.95897
0.86931 1.26033 0.98647 0.97078 1.00594 1.69810 1.48655 1.07225
1.31795 0.85062 0.78287 0.78259 0.77610 1.20904 1.20819 1.17312
1.23655 0.88204 0.99008 0.92561 0.90877 0.90252 0.88840 0.75047
0.84541 0.91144 0.81692 0.81655 0.89042 0.89126 0.82825 0.82945
0.76248 0.92038 0.90614 0.85346
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 28.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.32 9.54 71.98 0.69 0.36 16
2 C 0.09 0.91 2.03 -10.54 -0.02 0.88 16
3 O -0.56 -8.06 13.55 -148.98 -2.02 -10.08 16
4 C 0.12 1.47 8.13 83.18 0.68 2.14 16
5 N -1.04 -17.86 4.10 -550.87 -2.26 -20.12 16
6 S 2.63 63.83 5.96 -56.49 -0.34 63.49 16
7 O -0.99 -31.45 18.07 -127.65 -2.31 -33.76 16
8 O -0.99 -30.98 18.07 -127.65 -2.31 -33.29 16
9 C -0.60 -11.00 6.18 71.98 0.44 -10.56 16
10 C -0.13 -3.33 5.23 30.60 0.16 -3.17 16
11 C -0.61 -17.50 6.01 71.98 0.43 -17.06 16
12 S 2.59 106.86 5.42 -56.49 -0.31 106.55 16
13 O -1.00 -47.68 17.76 -127.65 -2.27 -49.95 16
14 O -1.02 -46.57 18.08 -127.65 -2.31 -48.87 16
15 N -0.98 -46.88 5.65 -54.26 -0.31 -47.18 16
16 C -0.32 -15.61 9.50 84.03 0.80 -14.81 16
17 H 0.11 5.09 7.82 -2.91 -0.02 5.07 16
18 C -0.02 -1.15 5.50 84.86 0.47 -0.68 16
19 N -0.93 -50.72 13.06 21.65 0.28 -50.44 16
20 Si 0.98 39.51 29.55 68.60 2.03 41.54 16
21 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16
22 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16
23 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16
24 C 0.09 0.96 8.09 83.09 0.67 1.64 16
25 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16
26 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16
27 H 0.09 -0.10 7.90 -2.39 -0.02 -0.12 16
28 H 0.40 2.01 9.04 -74.06 -0.67 1.35 16
29 H 0.14 0.54 8.10 -2.39 -0.02 0.52 16
30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16
31 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16
32 H 0.17 2.04 8.14 -2.39 -0.02 2.02 16
33 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
34 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16
35 H 0.15 3.70 8.14 -2.39 -0.02 3.68 16
36 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16
37 H 0.40 20.31 7.98 -96.75 -0.77 19.54 16
38 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16
39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.13 0.41 7.94 -2.39 -0.02 0.39 16
Total: -1.00 -86.45 369.30 -8.16 -94.60
By element:
Atomic # 1 Polarization: 29.13 SS G_CDS: -0.37 Total: 28.76 kcal
Atomic # 6 Polarization: -45.57 SS G_CDS: 4.32 Total: -41.25 kcal
Atomic # 7 Polarization: -115.46 SS G_CDS: -2.28 Total: -117.74 kcal
Atomic # 8 Polarization: -164.75 SS G_CDS: -11.21 Total: -175.96 kcal
Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal
Atomic # 16 Polarization: 170.69 SS G_CDS: -0.64 Total: 170.05 kcal
Total: -86.45 -8.16 -94.60 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349470180.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.923 kcal
(2) G-P(sol) polarization free energy of solvation -86.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) -190.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds