Wall clock time and date at job start Sat Apr 11 2020 06:28:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86806 * 120.00183 * 2 1
4 4 H 1.48497 * 109.46962 * 239.99752 * 3 2 1
5 5 H 1.48496 * 109.46822 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47231 * 119.99739 * 3 2 1
7 7 C 1.37878 * 120.00004 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00025 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99740 * 0.02562 * 7 2 1
10 10 N 1.46506 * 109.46782 * 179.97438 * 9 7 2
11 11 C 1.34970 * 125.97166 * 125.00043 * 10 9 7
12 12 C 1.35241 * 107.85658 * 179.97438 * 11 10 9
13 13 C 1.40409 * 107.87202 * 359.97438 * 12 11 10
14 14 N 1.40155 * 125.97655 * 180.02562 * 13 12 11
15 15 C 1.34778 * 119.99686 * 0.02562 * 14 13 12
16 16 O 1.21289 * 120.00169 * 0.02562 * 15 14 13
17 17 C 1.50701 * 119.99521 * 179.97438 * 15 14 13
18 18 H 1.09002 * 108.88936 * 38.64820 * 17 15 14
19 19 C 1.52792 * 108.91393 * 280.00135 * 17 15 14
20 20 S 1.81984 * 108.33964 * 186.94768 * 19 17 15
21 21 O 1.42106 * 108.82438 * 176.55306 * 20 19 17
22 22 O 1.42097 * 108.83247 * 308.27716 * 20 19 17
23 23 C 1.81768 * 100.34525 * 62.41731 * 20 19 17
24 24 C 1.50078 * 109.25684 * 315.01280 * 23 20 19
25 25 O 1.21285 * 116.82856 * 200.98297 * 24 23 20
26 26 N 1.31828 * 126.34443 * 20.96148 * 24 23 20
27 27 N 1.31227 * 108.04830 * 359.72240 * 13 12 11
28 28 H 0.96998 * 119.99632 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.47353 * 59.99435 * 9 7 2
30 30 H 1.09000 * 109.47019 * 299.99088 * 9 7 2
31 31 H 1.07993 * 126.07134 * 0.02562 * 11 10 9
32 32 H 1.07997 * 126.06215 * 180.02562 * 12 11 10
33 33 H 0.96997 * 120.00134 * 180.02562 * 14 13 12
34 34 H 1.09000 * 109.68872 * 306.65705 * 19 17 15
35 35 H 1.08999 * 109.68688 * 67.19790 * 19 17 15
36 36 H 1.09001 * 109.51051 * 74.94704 * 23 20 19
37 37 H 1.09002 * 109.50213 * 195.07828 * 23 20 19
38 38 H 0.96998 * 115.27082 * 174.28919 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 7 2.2030 -3.6127 0.0005
11 6 2.2420 -4.6224 0.8953
12 6 3.2602 -5.4430 0.5505
13 6 3.8679 -4.9156 -0.6002
14 7 4.9629 -5.4670 -1.2793
15 6 5.5268 -6.6076 -0.8346
16 8 5.0864 -7.1569 0.1529
17 6 6.7038 -7.2008 -1.5652
18 1 7.3551 -6.3932 -1.8995
19 6 6.1948 -7.9644 -2.7868
20 16 7.5995 -8.8441 -3.5385
21 8 7.1233 -9.6218 -4.6283
22 8 8.6593 -7.9211 -3.7484
23 6 8.0532 -9.9587 -2.1763
24 6 8.0629 -9.1881 -0.8885
25 8 8.7054 -9.6588 0.0263
26 7 7.4414 -8.0492 -0.6548
27 7 3.2272 -3.8196 -0.9323
28 1 -0.4849 0.8401 -0.0004
29 1 0.6246 -2.5571 -0.8896
30 1 0.6241 -2.5567 0.8904
31 1 1.5775 -4.7525 1.7366
32 1 3.5534 -6.3444 1.0680
33 1 5.3149 -5.0279 -2.0693
34 1 5.4336 -8.6819 -2.4805
35 1 5.7711 -7.2645 -3.5071
36 1 7.3261 -10.7681 -2.1106
37 1 9.0445 -10.3731 -2.3600
38 1 7.4855 -7.7339 0.2614
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001361502687.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:14
Heat of formation + Delta-G solvation = -31.888946 kcal
Electronic energy + Delta-G solvation = -26905.056232 eV
Core-core repulsion = 22685.112930 eV
Total energy + Delta-G solvation = -4219.943302 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 342.088 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.44821 -40.64834 -39.53963 -37.79906 -36.79241 -36.36703 -35.15092 -33.51221
-31.86841 -31.15695 -30.89837 -29.52149 -27.14385 -26.03441 -23.34946 -22.25953
-21.18927 -20.52882 -19.98593 -19.41970 -18.49445 -18.23976 -17.60171 -17.00310
-16.70724 -16.57058 -16.52672 -16.07824 -15.76240 -15.46590 -15.24046 -14.70418
-14.54355 -14.27828 -14.03206 -13.59405 -13.47529 -13.04257 -12.95915 -12.79389
-12.72555 -12.51289 -12.38273 -12.09867 -11.93443 -11.60489 -11.17779 -10.94727
-10.70558 -10.64576 -10.43856 -10.34835 -10.08041 -9.73597 -9.65072 -8.71586
-8.35979 -7.70272 -6.32973 -4.38808 -0.91930 1.57762 1.77320 1.87330
2.06459 2.52720 2.68194 2.82850 3.10086 3.19829 3.23562 3.23858
3.27297 3.48476 3.50959 3.76641 3.99079 4.15473 4.17484 4.26051
4.44505 4.63113 4.78908 5.02372 5.33077 5.56646 5.92031 5.98856
6.24416 6.32171 6.50144 6.70673 6.92446 7.09893 7.27018 7.33971
7.59229 7.73678 7.80246 7.87400 8.42320 8.68916 9.27428 10.75821
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.020788 B = 0.002263 C = 0.002192
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1346.583587 B =12368.969319 C =12773.530506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.063 3.937
3 Si 0.909 3.091
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.275 1.275
7 C -0.532 4.532
8 H 0.069 0.931
9 C 0.258 3.742
10 N -0.314 5.314
11 C 0.054 3.946
12 C -0.287 4.287
13 C 0.250 3.750
14 N -0.619 5.619
15 C 0.516 3.484
16 O -0.497 6.497
17 C 0.143 3.857
18 H 0.129 0.871
19 C -0.624 4.624
20 S 2.431 3.569
21 O -0.915 6.915
22 O -0.911 6.911
23 C -0.627 4.627
24 C 0.545 3.455
25 O -0.523 6.523
26 N -0.701 5.701
27 N -0.297 5.297
28 H 0.269 0.731
29 H 0.046 0.954
30 H 0.058 0.942
31 H 0.170 0.830
32 H 0.160 0.840
33 H 0.415 0.585
34 H 0.156 0.844
35 H 0.167 0.833
36 H 0.174 0.826
37 H 0.173 0.827
38 H 0.421 0.579
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.649 -18.039 -5.752 22.770
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.140 4.140
3 Si 0.736 3.264
4 H -0.199 1.199
5 H -0.210 1.210
6 H -0.200 1.200
7 C -0.571 4.571
8 H 0.087 0.913
9 C 0.140 3.860
10 N -0.096 5.096
11 C -0.096 4.096
12 C -0.318 4.318
13 C -0.003 4.003
14 N -0.266 5.266
15 C 0.297 3.703
16 O -0.369 6.369
17 C 0.032 3.968
18 H 0.147 0.853
19 C -0.752 4.752
20 S 2.608 3.392
21 O -0.912 6.912
22 O -0.908 6.908
23 C -0.756 4.756
24 C 0.329 3.671
25 O -0.398 6.398
26 N -0.357 5.357
27 N -0.128 5.128
28 H 0.078 0.922
29 H 0.064 0.936
30 H 0.076 0.924
31 H 0.187 0.813
32 H 0.177 0.823
33 H 0.251 0.749
34 H 0.174 0.826
35 H 0.185 0.815
36 H 0.191 0.809
37 H 0.190 0.810
38 H 0.260 0.740
Dipole moment (debyes) X Y Z Total
from point charges 12.721 -17.520 -6.488 22.602
hybrid contribution -0.043 0.579 1.189 1.324
sum 12.678 -16.940 -5.298 21.812
Atomic orbital electron populations
1.69901 1.06070 1.27888 1.49359 1.24945 0.94995 0.99599 0.94448
0.86369 0.79387 0.81687 0.78964 1.19883 1.20992 1.20005 1.21188
0.93933 0.89316 1.52626 0.91331 1.19802 0.85546 0.81190 0.99433
1.49159 1.23160 1.19608 1.17653 1.22599 1.00211 0.89988 0.96795
1.21489 1.02152 1.06436 1.01732 1.19017 0.91531 0.94828 0.94918
1.42232 1.29887 1.24216 1.30301 1.20131 0.84328 0.80568 0.85227
1.90736 1.61407 1.59787 1.25013 1.20169 0.93682 0.94169 0.88740
0.85335 1.30615 1.21593 1.15160 1.07782 1.08036 0.77184 0.77173
0.76765 1.93671 1.80960 1.69665 1.46890 1.93672 1.51890 1.61627
1.83647 1.30401 1.16433 1.16325 1.12481 1.18202 0.79529 0.80143
0.89201 1.90854 1.40806 1.64964 1.43160 1.44839 1.52369 1.22556
1.15889 1.77353 1.03570 1.16018 1.15868 0.92160 0.93580 0.92392
0.81290 0.82279 0.74933 0.82636 0.81522 0.80867 0.80965 0.74025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16
2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16
4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16
6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
7 C -0.53 -14.14 9.24 -34.44 -0.32 -14.46 16
8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16
9 C 0.26 6.18 6.26 -5.19 -0.03 6.15 16
10 N -0.31 -6.73 3.66 -62.56 -0.23 -6.96 16
11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16
12 C -0.29 -4.99 9.60 -39.83 -0.38 -5.37 16
13 C 0.25 4.31 8.11 -154.39 -1.25 3.06 16
14 N -0.62 -7.23 5.45 -11.13 -0.06 -7.29 16
15 C 0.52 5.20 6.85 -10.98 -0.08 5.13 16
16 O -0.50 -6.65 13.42 5.55 0.07 -6.57 16
17 C 0.14 0.85 3.18 -70.17 -0.22 0.62 16
18 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16
19 C -0.62 -2.25 5.78 37.05 0.21 -2.04 16
20 S 2.43 11.32 5.43 -107.50 -0.58 10.74 16
21 O -0.91 -7.07 18.11 -57.79 -1.05 -8.12 16
22 O -0.91 -7.12 17.92 -57.79 -1.04 -8.15 16
23 C -0.63 -2.65 6.51 35.71 0.23 -2.42 16
24 C 0.55 4.37 7.64 -12.58 -0.10 4.28 16
25 O -0.52 -6.42 17.60 5.55 0.10 -6.32 16
26 N -0.70 -5.08 4.63 -57.13 -0.26 -5.34 16
27 N -0.30 -6.16 12.43 31.44 0.39 -5.77 16
28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16
29 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16
30 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16
31 H 0.17 2.48 8.06 -52.49 -0.42 2.05 16
32 H 0.16 2.64 5.92 -52.49 -0.31 2.33 16
33 H 0.41 3.51 8.82 -40.82 -0.36 3.15 16
34 H 0.16 0.38 8.13 -51.93 -0.42 -0.04 16
35 H 0.17 0.23 8.14 -51.93 -0.42 -0.19 16
36 H 0.17 0.29 8.14 -51.93 -0.42 -0.13 16
37 H 0.17 0.52 8.14 -51.93 -0.42 0.09 16
38 H 0.42 3.39 7.97 -40.82 -0.33 3.06 16
LS Contribution 346.66 15.07 5.22 5.22
Total: -1.00 -38.88 346.66 -7.86 -46.74
By element:
Atomic # 1 Polarization: 6.58 SS G_CDS: -3.92 Total: 2.66 kcal
Atomic # 6 Polarization: -0.47 SS G_CDS: -2.23 Total: -2.70 kcal
Atomic # 7 Polarization: -49.67 SS G_CDS: 0.57 Total: -49.10 kcal
Atomic # 8 Polarization: -27.26 SS G_CDS: -1.91 Total: -29.17 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal
Atomic # 16 Polarization: 11.32 SS G_CDS: -0.58 Total: 10.74 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -38.88 -7.86 -46.74 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361502687.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.850 kcal
(2) G-P(sol) polarization free energy of solvation -38.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.025 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.889 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds