Wall clock time and date at job start Sat Apr 11 2020 06:29:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31131 * 1
3 3 Br 1.89098 * 119.99962 * 2 1
4 4 C 1.50693 * 120.00081 * 180.02562 * 2 1 3
5 5 N 1.46493 * 109.47440 * 91.52107 * 4 2 1
6 6 C 1.36742 * 127.13456 * 90.91053 * 5 4 2
7 7 C 1.50695 * 126.35082 * 0.02562 * 6 5 4
8 8 C 1.53001 * 109.46990 * 89.99939 * 7 6 5
9 9 N 1.30299 * 107.30357 * 179.97438 * 6 5 4
10 10 N 1.28521 * 110.05515 * 359.72808 * 9 6 5
11 11 C 1.31217 * 109.86248 * 0.44934 * 10 9 6
12 12 N 1.38578 * 126.47782 * 179.81880 * 11 10 9
13 13 C 1.46899 * 110.99457 * 107.51087 * 12 11 10
14 14 C 1.46897 * 110.99945 * 343.55865 * 12 11 10
15 15 H 1.09001 * 109.47180 * 59.99455 * 14 12 11
16 16 C 1.53001 * 109.47276 * 299.99668 * 14 12 11
17 17 C 1.50695 * 109.47320 * 179.97438 * 14 12 11
18 18 H 1.08001 * 119.99722 * 359.97438 * 17 14 12
19 19 C 1.37873 * 120.00370 * 179.97438 * 17 14 12
20 20 N 1.31517 * 120.00153 * 179.97438 * 19 17 14
21 21 Si 1.86803 * 119.99848 * 0.02562 * 19 17 14
22 22 H 1.48507 * 109.46768 * 269.99608 * 21 19 17
23 23 H 1.48495 * 109.47196 * 29.99263 * 21 19 17
24 24 H 1.48498 * 109.47266 * 149.99836 * 21 19 17
25 25 H 1.07999 * 120.00012 * 179.97438 * 1 2 3
26 26 H 1.08003 * 120.00190 * 0.02562 * 1 2 3
27 27 H 1.09002 * 109.47223 * 331.52082 * 4 2 1
28 28 H 1.09002 * 109.47539 * 211.52284 * 4 2 1
29 29 H 1.08997 * 109.47483 * 209.99907 * 7 6 5
30 30 H 1.08999 * 109.46988 * 330.00563 * 7 6 5
31 31 H 1.09003 * 109.47196 * 60.00269 * 8 7 6
32 32 H 1.08996 * 109.47432 * 180.02562 * 8 7 6
33 33 H 1.09002 * 109.47390 * 300.00405 * 8 7 6
34 34 H 1.09001 * 109.47416 * 289.38229 * 13 12 11
35 35 H 1.09001 * 109.47709 * 49.38643 * 13 12 11
36 36 H 1.09003 * 109.47226 * 169.39048 * 13 12 11
37 37 H 1.08997 * 109.47058 * 300.00441 * 16 14 12
38 38 H 1.09007 * 109.46762 * 59.99628 * 16 14 12
39 39 H 1.09000 * 109.47251 * 179.97438 * 16 14 12
40 40 H 0.97002 * 119.99929 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3113 0.0000 0.0000
3 35 2.2568 1.6376 0.0000
4 6 2.0648 -1.3050 -0.0006
5 7 2.3407 -1.7090 -1.3814
6 6 3.4479 -1.4061 -2.1246
7 6 4.6287 -0.5852 -1.6743
8 6 5.6771 -1.5034 -1.0429
9 7 3.2932 -1.9597 -3.2939
10 7 2.1749 -2.5917 -3.3378
11 6 1.5466 -2.4662 -2.1927
12 7 0.3125 -3.0056 -1.8667
13 6 0.4588 -4.1236 -0.9251
14 6 -0.4141 -3.4246 -3.0727
15 1 0.1675 -4.1781 -3.6038
16 6 -0.6327 -2.2142 -3.9827
17 6 -1.7479 -4.0052 -2.6793
18 1 -2.0277 -4.0581 -1.6375
19 6 -2.6110 -4.4689 -3.6493
20 7 -3.7749 -4.9761 -3.3059
21 14 -2.1268 -4.3781 -5.4512
22 1 -2.5783 -3.0829 -6.0204
23 1 -0.6506 -4.4845 -5.5730
24 1 -2.7664 -5.4945 -6.1926
25 1 -0.5400 -0.9353 -0.0004
26 1 -0.5400 0.9353 -0.0004
27 1 1.4642 -2.0716 0.4891
28 1 3.0051 -1.1820 0.5368
29 1 5.0638 -0.0733 -2.5325
30 1 4.3008 0.1506 -0.9401
31 1 6.0050 -2.2394 -1.7771
32 1 6.5310 -0.9097 -0.7168
33 1 5.2420 -2.0155 -0.1846
34 1 0.9065 -4.9747 -1.4383
35 1 1.0999 -3.8202 -0.0974
36 1 -0.5215 -4.4058 -0.5409
37 1 -1.2141 -1.4606 -3.4517
38 1 0.3323 -1.7946 -4.2672
39 1 -1.1714 -2.5252 -4.8778
40 1 -4.3823 -5.3020 -3.9884
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001454739827.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:31
Heat of formation + Delta-G solvation = 104.631716 kcal
Electronic energy + Delta-G solvation = -23077.940862 eV
Core-core repulsion = 19783.279243 eV
Total energy + Delta-G solvation = -3294.661619 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 342.075 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-44.01581 -39.07325 -37.55839 -35.15228 -34.75361 -33.90167 -32.09653 -30.91512
-30.22883 -28.26103 -27.29224 -26.23190 -24.89012 -23.62678 -22.00384 -21.09606
-20.49459 -18.95933 -17.96881 -17.65721 -16.90620 -16.80047 -16.40262 -15.92947
-15.44577 -15.24738 -15.11146 -14.91648 -14.51652 -14.12372 -13.78671 -13.46189
-13.27818 -13.01772 -12.94140 -12.72949 -12.68410 -12.51564 -12.36420 -12.25789
-12.15671 -12.14152 -11.62912 -11.52935 -11.36682 -11.22994 -10.89672 -10.77715
-10.42475 -10.20450 -9.20456 -8.33315 -6.35813 0.44212 0.64912 0.84712
1.26472 1.34618 1.44355 1.47118 1.85689 2.28090 2.84877 3.03310
3.39855 3.42506 3.57809 3.92187 3.97401 4.17534 4.33133 4.39495
4.45810 4.51097 4.56373 4.58775 4.62349 4.68332 4.75060 4.92397
4.97751 4.99827 5.01188 5.05269 5.13200 5.17864 5.27316 5.32164
5.45886 5.68680 5.81804 6.15167 6.52382 6.68471 7.28793 7.81786
8.81041
Molecular weight = 342.08amu
Principal moments of inertia in cm(-1)
A = 0.016417 B = 0.004301 C = 0.003840
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1705.099118 B = 6508.038070 C = 7289.030149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C -0.172 4.172
3 Br -0.055 7.055
4 C 0.152 3.848
5 N -0.469 5.469
6 C 0.189 3.811
7 C -0.036 4.036
8 C -0.141 4.141
9 N -0.330 5.330
10 N -0.366 5.366
11 C 0.367 3.633
12 N -0.444 5.444
13 C 0.042 3.958
14 C 0.211 3.789
15 H -0.002 1.002
16 C -0.138 4.138
17 C -0.505 4.505
18 H 0.068 0.932
19 C 0.036 3.964
20 N -0.932 5.932
21 Si 0.925 3.075
22 H -0.269 1.269
23 H -0.266 1.266
24 H -0.293 1.293
25 H 0.127 0.873
26 H 0.126 0.874
27 H 0.124 0.876
28 H 0.132 0.868
29 H 0.101 0.899
30 H 0.100 0.900
31 H 0.047 0.953
32 H 0.095 0.905
33 H 0.058 0.942
34 H 0.022 0.978
35 H 0.086 0.914
36 H 0.089 0.911
37 H 0.055 0.945
38 H 0.045 0.955
39 H 0.036 0.964
40 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.546 13.898 13.228 25.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.252 4.252
3 Br 0.028 6.972
4 C 0.030 3.970
5 N -0.164 5.164
6 C -0.080 4.080
7 C -0.075 4.075
8 C -0.199 4.199
9 N -0.168 5.168
10 N -0.209 5.209
11 C 0.010 3.990
12 N -0.169 5.169
13 C -0.104 4.104
14 C 0.104 3.896
15 H 0.016 0.984
16 C -0.196 4.196
17 C -0.543 4.543
18 H 0.086 0.914
19 C -0.164 4.164
20 N -0.571 5.571
21 Si 0.754 3.246
22 H -0.195 1.195
23 H -0.191 1.191
24 H -0.220 1.220
25 H 0.145 0.855
26 H 0.145 0.855
27 H 0.142 0.858
28 H 0.150 0.850
29 H 0.120 0.880
30 H 0.118 0.882
31 H 0.066 0.934
32 H 0.114 0.886
33 H 0.077 0.923
34 H 0.041 0.959
35 H 0.104 0.896
36 H 0.108 0.892
37 H 0.074 0.926
38 H 0.064 0.936
39 H 0.054 0.946
40 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 16.723 14.309 11.982 25.060
hybrid contribution -0.700 -0.796 -0.382 1.127
sum 16.023 13.514 11.600 23.956
Atomic orbital electron populations
1.24600 0.94227 1.05088 0.88633 1.24062 0.96590 0.91993 1.12536
1.96711 1.76004 1.26603 1.97833 1.21173 1.03402 0.93737 0.78697
1.46374 1.16116 1.39807 1.14133 1.25443 0.91639 1.02391 0.88490
1.20281 0.88517 0.95956 1.02782 1.21732 0.98345 0.99503 1.00329
1.73867 1.11731 1.12659 1.18573 1.74626 1.03009 1.22528 1.20748
1.22863 0.91099 0.96838 0.88213 1.58854 1.08137 1.32745 1.17115
1.22408 1.03642 0.90067 0.94319 1.19373 0.92299 0.92515 0.85447
0.98439 1.22045 0.99871 0.99186 0.98452 1.21015 0.99266 1.38963
0.95102 0.91360 1.25370 0.94657 0.94537 1.01813 1.69942 1.09568
1.42597 1.35016 0.86218 0.79016 0.77154 0.82253 1.19541 1.19100
1.22036 0.85470 0.85542 0.85836 0.84963 0.88026 0.88166 0.93384
0.88630 0.92339 0.95940 0.89552 0.89213 0.92558 0.93621 0.94581
0.92257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.75 13.98 67.65 0.95 -0.80 16
2 C -0.17 -3.38 5.99 25.51 0.15 -3.22 16
3 Br -0.05 -0.96 32.17 -20.37 -0.66 -1.62 16
4 C 0.15 2.93 5.97 85.63 0.51 3.44 16
5 N -0.47 -13.25 2.79 -518.93 -1.45 -14.70 16
6 C 0.19 5.48 7.32 137.64 1.01 6.49 16
7 C -0.04 -0.66 6.13 29.85 0.18 -0.48 16
8 C -0.14 -2.05 9.89 71.98 0.71 -1.33 16
9 N -0.33 -12.74 12.18 -49.54 -0.60 -13.35 16
10 N -0.37 -15.89 9.77 -58.00 -0.57 -16.45 16
11 C 0.37 13.75 6.14 260.11 1.60 15.35 16
12 N -0.44 -17.34 4.66 -711.01 -3.31 -20.65 16
13 C 0.04 1.43 8.94 127.69 1.14 2.57 16
14 C 0.21 10.08 1.29 44.17 0.06 10.14 16
15 H 0.00 -0.11 7.00 -2.39 -0.02 -0.13 16
16 C -0.14 -6.48 8.49 71.98 0.61 -5.87 16
17 C -0.51 -27.06 8.57 25.60 0.22 -26.84 16
18 H 0.07 3.83 6.66 -2.91 -0.02 3.81 16
19 C 0.04 2.01 5.45 84.65 0.46 2.48 16
20 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16
21 Si 0.92 46.00 24.37 68.60 1.67 47.67 16
22 H -0.27 -12.93 6.87 99.48 0.68 -12.25 16
23 H -0.27 -13.38 6.53 99.48 0.65 -12.73 16
24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16
25 H 0.13 2.93 8.03 -2.91 -0.02 2.91 16
26 H 0.13 2.29 8.05 -2.91 -0.02 2.27 16
27 H 0.12 2.16 6.06 -2.39 -0.01 2.15 16
28 H 0.13 1.74 7.82 -2.39 -0.02 1.72 16
29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16
30 H 0.10 1.54 6.24 -2.39 -0.01 1.52 16
31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16
35 H 0.09 2.17 6.11 -2.39 -0.01 2.15 16
36 H 0.09 3.19 6.50 -2.39 -0.02 3.18 16
37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16
38 H 0.04 2.13 6.07 -2.38 -0.01 2.11 16
39 H 0.04 1.74 3.27 -2.39 -0.01 1.73 16
40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
Total: -1.00 -69.49 337.51 3.95 -65.54
By element:
Atomic # 1 Polarization: 5.79 SS G_CDS: 0.97 Total: 6.76 kcal
Atomic # 6 Polarization: -5.68 SS G_CDS: 7.60 Total: 1.92 kcal
Atomic # 7 Polarization: -114.65 SS G_CDS: -5.63 Total: -120.28 kcal
Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal
Atomic # 35 Polarization: -0.96 SS G_CDS: -0.66 Total: -1.62 kcal
Total: -69.49 3.95 -65.54 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001454739827.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 170.171 kcal
(2) G-P(sol) polarization free energy of solvation -69.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.677 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal
(6) G-S(sol) free energy of system = (1) + (5) 104.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds