Wall clock time and date at job start Sat Apr 11 2020 06:29:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86796 * 119.99858 * 2 1
4 4 H 1.48498 * 109.47611 * 270.00145 * 3 2 1
5 5 H 1.48493 * 109.47105 * 30.00558 * 3 2 1
6 6 H 1.48507 * 109.46867 * 150.00471 * 3 2 1
7 7 C 1.38812 * 119.99807 * 180.02562 * 2 1 3
8 8 H 1.08009 * 119.99897 * 179.97438 * 7 2 1
9 9 N 1.36938 * 120.00455 * 359.97438 * 7 2 1
10 10 C 1.47016 * 125.64353 * 359.95579 * 9 7 2
11 11 C 1.54325 * 107.27044 * 181.09605 * 10 9 7
12 12 H 1.09003 * 110.72368 * 140.55606 * 11 10 9
13 13 O 1.42898 * 110.72367 * 263.83732 * 11 10 9
14 14 C 1.55157 * 102.94024 * 22.19640 * 11 10 9
15 15 H 1.09003 * 111.04002 * 82.58654 * 14 11 10
16 16 C 1.53005 * 111.00829 * 206.42404 * 14 11 10
17 17 N 1.46495 * 109.47399 * 178.65077 * 16 14 11
18 18 C 1.34773 * 119.99923 * 179.97438 * 17 16 14
19 19 O 1.21579 * 120.00281 * 359.97438 * 18 17 16
20 20 C 1.47653 * 120.00082 * 179.97438 * 18 17 16
21 21 C 1.39695 * 120.12736 * 0.02562 * 20 18 17
22 22 C 1.37784 * 119.89168 * 179.97438 * 21 20 18
23 23 C 1.38721 * 120.15557 * 359.74261 * 22 21 20
24 24 F 1.35090 * 119.86941 * 180.25177 * 23 22 21
25 25 C 1.38563 * 120.26029 * 0.51667 * 23 22 21
26 26 C 1.38032 * 120.10450 * 359.48013 * 25 23 22
27 27 Cl 1.73604 * 120.07636 * 180.23839 * 26 25 23
28 28 C 1.47423 * 125.65012 * 180.02562 * 9 7 2
29 29 H 0.96994 * 120.00068 * 359.97438 * 1 2 3
30 30 H 1.08993 * 109.89111 * 300.51404 * 10 9 7
31 31 H 1.09007 * 109.88102 * 61.53202 * 10 9 7
32 32 H 0.96705 * 113.99949 * 293.51829 * 13 11 10
33 33 H 1.08997 * 109.46913 * 58.64513 * 16 14 11
34 34 H 1.09000 * 109.46496 * 298.65421 * 16 14 11
35 35 H 0.96995 * 120.00181 * 359.97438 * 17 16 14
36 36 H 1.08005 * 120.05383 * 359.95440 * 21 20 18
37 37 H 1.07998 * 119.92344 * 179.97438 * 22 21 20
38 38 H 1.08002 * 119.94896 * 179.76763 * 25 23 22
39 39 H 1.09001 * 110.36569 * 36.99542 * 28 9 7
40 40 H 1.09001 * 110.45528 * 274.72042 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4477 2.6525 0.7001
6 1 3.5478 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3256 -2.3881 -0.0005
10 6 -0.1375 -2.5328 0.0009
11 6 -0.4484 -4.0441 0.0285
12 1 -1.2978 -4.2513 0.6795
13 8 -0.6897 -4.5349 -1.2917
14 6 0.8525 -4.6559 0.6122
15 1 0.8590 -4.5962 1.7006
16 6 1.0372 -6.1008 0.1442
17 7 2.2889 -6.6340 0.6875
18 6 2.6612 -7.8983 0.4060
19 8 1.9581 -8.5966 -0.2984
20 6 3.9230 -8.4355 0.9532
21 6 4.7327 -7.6357 1.7633
22 6 5.9089 -8.1422 2.2717
23 6 6.2879 -9.4455 1.9853
24 9 7.4398 -9.9378 2.4910
25 6 5.4923 -10.2426 1.1781
26 6 4.3117 -9.7463 0.6631
27 17 3.3125 -10.7477 -0.3431
28 6 1.9335 -3.7312 -0.0005
29 1 -0.4850 0.8400 0.0004
30 1 -0.5567 -2.0519 0.8846
31 1 -0.5554 -2.0824 -0.8995
32 1 -1.4917 -4.1828 -1.7017
33 1 1.0730 -6.1281 -0.9449
34 1 0.2016 -6.7061 0.4955
35 1 2.8497 -6.0771 1.2498
36 1 4.4373 -6.6220 1.9905
37 1 6.5355 -7.5242 2.8977
38 1 5.7941 -11.2554 0.9553
39 1 2.8334 -3.7402 0.6144
40 1 2.1671 -4.0436 -1.0184
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000958645295.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:19
Heat of formation + Delta-G solvation = -95.102096 kcal
Electronic energy + Delta-G solvation = -26861.069569 eV
Core-core repulsion = 22616.421471 eV
Total energy + Delta-G solvation = -4244.648097 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.10942 -41.33610 -40.03319 -39.14902 -37.48104 -36.39190 -36.06010 -33.98175
-32.51183 -31.92975 -30.99081 -29.37469 -27.27197 -25.64958 -24.53938 -23.89447
-22.29113 -21.57015 -21.15599 -19.40886 -19.08917 -18.57872 -18.09263 -17.68739
-16.84128 -16.80230 -16.58707 -16.31944 -16.12971 -15.76003 -15.57882 -15.35711
-15.01261 -14.74035 -14.57143 -14.37584 -14.25918 -13.99036 -13.94075 -13.47111
-13.11672 -13.04416 -12.66236 -12.50055 -12.42929 -12.32400 -12.24463 -12.02454
-11.86725 -11.75008 -11.50949 -10.77348 -10.71687 -10.65138 -10.22600 -10.12269
-9.80709 -8.88884 -7.84428 -5.19262 -0.56895 -0.09688 0.98199 1.47812
1.49305 1.57597 1.64704 2.06698 2.50074 2.50797 3.00762 3.29933
3.38113 3.46500 3.58572 3.60598 3.81248 3.94102 3.96798 3.97985
4.05038 4.22610 4.46302 4.57421 4.63555 4.66929 4.74377 4.86796
4.90157 4.92517 4.97892 5.04234 5.34464 5.42757 5.44679 5.50736
5.55425 5.72674 6.19524 6.50245 6.94571 7.10903 7.18254 7.78127
8.42263 9.25815
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.014768 B = 0.002603 C = 0.002265
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1895.571508 B =10753.521258 C =12361.732648
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C -0.067 4.067
3 Si 0.977 3.023
4 H -0.291 1.291
5 H -0.295 1.295
6 H -0.265 1.265
7 C -0.240 4.240
8 H 0.085 0.915
9 N -0.624 5.624
10 C 0.159 3.841
11 C 0.094 3.906
12 H 0.087 0.913
13 O -0.571 6.571
14 C -0.093 4.093
15 H 0.111 0.889
16 C 0.157 3.843
17 N -0.710 5.710
18 C 0.549 3.451
19 O -0.552 6.552
20 C -0.152 4.152
21 C -0.036 4.036
22 C -0.145 4.145
23 C 0.135 3.865
24 F -0.129 7.129
25 C -0.157 4.157
26 C 0.025 3.975
27 Cl -0.037 7.037
28 C 0.142 3.858
29 H 0.246 0.754
30 H 0.023 0.977
31 H 0.012 0.988
32 H 0.390 0.610
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.411 0.589
36 H 0.173 0.827
37 H 0.179 0.821
38 H 0.165 0.835
39 H 0.057 0.943
40 H 0.011 0.989
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.721 -19.522 6.888 22.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.601 5.601
2 C -0.259 4.259
3 Si 0.805 3.195
4 H -0.218 1.218
5 H -0.222 1.222
6 H -0.190 1.190
7 C -0.368 4.368
8 H 0.103 0.897
9 N -0.350 5.350
10 C 0.034 3.966
11 C 0.034 3.966
12 H 0.104 0.896
13 O -0.379 6.379
14 C -0.112 4.112
15 H 0.129 0.871
16 C 0.033 3.967
17 N -0.363 5.363
18 C 0.336 3.664
19 O -0.431 6.431
20 C -0.157 4.157
21 C -0.054 4.054
22 C -0.164 4.164
23 C 0.115 3.885
24 F -0.107 7.107
25 C -0.177 4.177
26 C -0.003 4.003
27 Cl -0.007 7.007
28 C 0.017 3.983
29 H 0.055 0.945
30 H 0.041 0.959
31 H 0.030 0.970
32 H 0.239 0.761
33 H 0.076 0.924
34 H 0.089 0.911
35 H 0.249 0.751
36 H 0.190 0.810
37 H 0.196 0.804
38 H 0.183 0.817
39 H 0.075 0.925
40 H 0.029 0.971
Dipole moment (debyes) X Y Z Total
from point charges 9.670 -20.222 6.429 23.319
hybrid contribution -0.102 1.579 -0.255 1.603
sum 9.569 -18.643 6.174 21.846
Atomic orbital electron populations
1.70144 1.06238 1.25214 1.58531 1.25613 0.96620 1.00940 1.02769
0.85100 0.77864 0.79262 0.77250 1.21841 1.22196 1.18981 1.19483
0.91114 0.83629 1.42622 0.89731 1.44689 1.02281 1.01130 1.86949
1.21679 0.84594 0.91887 0.98457 1.22965 0.96952 0.92415 0.84242
0.89577 1.86386 1.50060 1.71147 1.30267 1.22587 0.94848 0.92909
1.00871 0.87133 1.20873 0.85527 0.91817 0.98438 1.45842 1.24640
1.13236 1.52580 1.18272 0.85488 0.81975 0.80625 1.90868 1.55066
1.58646 1.38519 1.19867 0.97426 0.94310 1.04058 1.21466 0.91827
1.00280 0.91865 1.21518 0.98291 0.94028 1.02535 1.17803 0.82804
0.92946 0.94915 1.91557 1.46224 1.87991 1.84951 1.21081 0.93637
1.02776 1.00177 1.20825 0.92909 0.91433 0.95158 1.98434 1.68336
1.67552 1.66418 1.21691 0.95341 0.84199 0.97049 0.94472 0.95878
0.97008 0.76061 0.92431 0.91051 0.75101 0.80983 0.80395 0.81724
0.92525 0.97115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -55.54 10.31 21.65 0.22 -55.31 16
2 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16
3 Si 0.98 44.45 29.55 68.60 2.03 46.48 16
4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16
6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
7 C -0.24 -12.90 10.28 84.03 0.86 -12.04 16
8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16
9 N -0.62 -30.47 3.39 -692.03 -2.35 -32.82 16
10 C 0.16 7.39 5.14 86.73 0.45 7.84 16
11 C 0.09 3.20 4.09 31.78 0.13 3.33 16
12 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16
13 O -0.57 -18.89 12.10 -148.98 -1.80 -20.69 16
14 C -0.09 -2.77 3.03 -9.41 -0.03 -2.80 16
15 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16
16 C 0.16 4.32 4.74 86.38 0.41 4.73 16
17 N -0.71 -16.07 5.36 -466.16 -2.50 -18.57 16
18 C 0.55 14.06 7.76 86.73 0.67 14.73 16
19 O -0.55 -18.14 13.96 -3.97 -0.06 -18.20 16
20 C -0.15 -3.04 5.88 -20.07 -0.12 -3.16 16
21 C -0.04 -0.46 9.53 22.51 0.21 -0.24 16
22 C -0.15 -1.57 10.01 22.28 0.22 -1.35 16
23 C 0.14 1.86 7.30 22.46 0.16 2.03 16
24 F -0.13 -1.86 17.26 44.97 0.78 -1.09 16
25 C -0.16 -2.45 9.79 22.30 0.22 -2.23 16
26 C 0.02 0.51 6.35 22.59 0.14 0.65 16
27 Cl -0.04 -0.89 26.02 -2.72 -0.07 -0.96 16
28 C 0.14 5.33 6.40 86.85 0.56 5.88 16
29 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16
30 H 0.02 1.19 7.38 -2.39 -0.02 1.17 16
31 H 0.01 0.63 7.43 -2.38 -0.02 0.61 16
32 H 0.39 10.23 9.12 -74.05 -0.68 9.55 16
33 H 0.06 1.92 7.42 -2.39 -0.02 1.90 16
34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
35 H 0.41 6.94 6.36 -92.71 -0.59 6.35 16
36 H 0.17 1.31 6.40 -2.91 -0.02 1.29 16
37 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16
38 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16
39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
40 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16
Total: -1.00 -72.56 352.00 0.46 -72.11
By element:
Atomic # 1 Polarization: 15.04 SS G_CDS: -0.15 Total: 14.89 kcal
Atomic # 6 Polarization: 9.80 SS G_CDS: 4.36 Total: 14.16 kcal
Atomic # 7 Polarization: -102.07 SS G_CDS: -4.62 Total: -106.70 kcal
Atomic # 8 Polarization: -37.03 SS G_CDS: -1.86 Total: -38.89 kcal
Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.09 kcal
Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal
Atomic # 17 Polarization: -0.89 SS G_CDS: -0.07 Total: -0.96 kcal
Total: -72.56 0.46 -72.11 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958645295.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.997 kcal
(2) G-P(sol) polarization free energy of solvation -72.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.102 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds