Wall clock time and date at job start Sat Apr 11 2020 06:29:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 S 1.70451 * 124.59433 * 2 1
4 4 C 1.75502 * 92.44598 * 180.02562 * 3 2 1
5 5 C 1.32772 * 110.57581 * 359.71024 * 4 3 2
6 6 C 1.36011 * 124.59021 * 180.02562 * 2 1 3
7 7 C 1.47185 * 123.46174 * 359.97438 * 6 2 1
8 8 O 1.21641 * 120.00081 * 0.27253 * 7 6 2
9 9 N 1.34784 * 119.99925 * 180.02562 * 7 6 2
10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6
11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7
12 12 H 1.08998 * 109.47021 * 295.00110 * 11 10 9
13 13 C 1.53004 * 109.47321 * 175.00102 * 11 10 9
14 14 N 1.46498 * 109.47240 * 55.00209 * 11 10 9
15 15 C 1.34776 * 119.99880 * 205.00358 * 14 11 10
16 16 O 1.21281 * 120.00492 * 359.97438 * 15 14 11
17 17 C 1.50706 * 119.99726 * 179.97438 * 15 14 11
18 18 S 1.81001 * 109.46937 * 179.97438 * 17 15 14
19 19 C 1.76198 * 100.00190 * 180.02562 * 18 17 15
20 20 H 1.07999 * 119.99670 * 359.97438 * 19 18 17
21 21 C 1.38797 * 120.00116 * 179.97438 * 19 18 17
22 22 N 1.31624 * 120.00017 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 119.99810 * 179.97438 * 21 19 18
24 24 H 1.48513 * 109.46766 * 90.00421 * 23 21 19
25 25 H 1.48497 * 109.47289 * 210.00177 * 23 21 19
26 26 H 1.48500 * 109.47557 * 330.00570 * 23 21 19
27 27 H 1.08997 * 109.47224 * 269.97469 * 1 2 3
28 28 H 1.09000 * 109.46951 * 29.97482 * 1 2 3
29 29 H 1.08997 * 109.47224 * 149.97670 * 1 2 3
30 30 H 1.08005 * 124.71205 * 179.97438 * 4 3 2
31 31 H 1.08004 * 123.45670 * 180.28403 * 5 4 3
32 32 H 0.96999 * 120.00044 * 359.97438 * 9 7 6
33 33 H 1.09004 * 109.47024 * 300.00310 * 10 9 7
34 34 H 1.09005 * 109.47136 * 59.99926 * 10 9 7
35 35 H 1.08998 * 109.47079 * 299.99972 * 13 11 10
36 36 H 1.09000 * 109.46939 * 60.00079 * 13 11 10
37 37 H 1.08998 * 109.47100 * 179.97438 * 13 11 10
38 38 H 0.96994 * 120.00389 * 24.99655 * 14 11 10
39 39 H 1.08994 * 109.46905 * 299.99507 * 17 15 14
40 40 H 1.08995 * 109.47277 * 59.99864 * 17 15 14
41 41 H 0.97005 * 120.00117 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.4747 1.4031 0.0000
4 6 3.9606 0.4693 -0.0008
5 6 3.6943 -0.8315 0.0053
6 6 2.2791 -1.1197 -0.0005
7 6 1.7290 -2.4849 -0.0006
8 8 0.5246 -2.6553 -0.0052
9 7 2.5598 -3.5462 -0.0006
10 6 2.0122 -4.9050 0.0000
11 6 3.1595 -5.9172 0.0005
12 1 3.7193 -5.8322 -0.9308
13 6 2.5912 -7.3322 0.1267
14 7 4.0496 -5.6458 1.1319
15 6 5.3406 -6.0296 1.0808
16 8 5.7653 -6.6000 0.0984
17 6 6.2564 -5.7498 2.2445
18 16 7.9116 -6.3825 1.8753
19 6 8.7487 -5.9341 3.3594
20 1 8.2152 -5.4224 4.1468
21 6 10.0937 -6.2385 3.5167
22 7 10.7440 -6.8618 2.5569
23 14 10.9814 -5.7625 5.0898
24 1 10.8713 -6.8688 6.0744
25 1 12.4133 -5.5056 4.7920
26 1 10.3651 -4.5348 5.6539
27 1 -0.3633 -0.0005 1.0276
28 1 -0.3633 0.8902 -0.5134
29 1 -0.3633 -0.8897 -0.5142
30 1 4.9538 0.8937 -0.0014
31 1 4.4576 -1.5955 0.0105
32 1 3.5202 -3.4103 -0.0009
33 1 1.4000 -5.0497 0.8902
34 1 1.3995 -5.0502 -0.8898
35 1 2.0314 -7.4171 1.0581
36 1 1.9289 -7.5341 -0.7151
37 1 3.4086 -8.0533 0.1267
38 1 3.7100 -5.1898 1.9177
39 1 6.3080 -4.6747 2.4160
40 1 5.8705 -6.2420 3.1371
41 1 11.6841 -7.0742 2.6666
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001579442727.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:12
Heat of formation + Delta-G solvation = -53.047710 kcal
Electronic energy + Delta-G solvation = -24187.842314 eV
Core-core repulsion = 20513.274714 eV
Total energy + Delta-G solvation = -3674.567600 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.086 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.35954 -39.38589 -37.31751 -36.31739 -33.93658 -32.46828 -32.18042 -31.50931
-28.68873 -28.07269 -26.15756 -25.52110 -23.65602 -21.87173 -21.77436 -20.40784
-19.61190 -17.95665 -17.57821 -17.14123 -16.63641 -16.12521 -15.92985 -15.40380
-14.99066 -14.83861 -14.69561 -14.28886 -13.94504 -13.81078 -13.68431 -13.33180
-13.15532 -12.98341 -12.90154 -12.74949 -12.59093 -12.37186 -12.08277 -11.90827
-11.87362 -11.36949 -11.18338 -11.09710 -11.05970 -10.79306 -10.01368 -9.85703
-9.52302 -9.38303 -9.11759 -9.08943 -9.04320 -8.76786 -8.28715 -6.54691
-6.25603 -3.96500 0.48754 1.16566 1.57436 1.68145 2.88206 2.97216
3.06159 3.11481 3.19593 3.25374 3.29032 3.64572 4.16688 4.34362
4.38702 4.55747 4.81261 4.89512 5.00986 5.05776 5.09825 5.12735
5.24320 5.32318 5.33147 5.43184 5.51289 5.61008 5.61935 5.69397
5.82086 5.89151 5.90036 5.94182 6.06397 6.08797 6.20879 6.53305
7.23170 7.55735 7.59917 7.96461 8.31330 8.51470 9.19980 10.81759
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.010999 B = 0.002567 C = 0.002162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2545.064736 B =10904.707560 C =12945.697094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C -0.139 4.139
3 S 0.176 5.824
4 C -0.231 4.231
5 C -0.105 4.105
6 C -0.179 4.179
7 C 0.583 3.417
8 O -0.540 6.540
9 N -0.723 5.723
10 C 0.114 3.886
11 C 0.131 3.869
12 H 0.095 0.905
13 C -0.161 4.161
14 N -0.738 5.738
15 C 0.533 3.467
16 O -0.514 6.514
17 C -0.154 4.154
18 S -0.059 6.059
19 C -0.536 4.536
20 H 0.072 0.928
21 C 0.074 3.926
22 N -0.867 5.867
23 Si 0.918 3.082
24 H -0.277 1.277
25 H -0.282 1.282
26 H -0.272 1.272
27 H 0.079 0.921
28 H 0.065 0.935
29 H 0.104 0.896
30 H 0.171 0.829
31 H 0.150 0.850
32 H 0.405 0.595
33 H 0.075 0.925
34 H 0.083 0.917
35 H 0.059 0.941
36 H 0.066 0.934
37 H 0.071 0.929
38 H 0.399 0.601
39 H 0.089 0.911
40 H 0.090 0.910
41 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.441 13.865 -4.991 25.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.259 4.259
3 S 0.442 5.558
4 C -0.366 4.366
5 C -0.134 4.134
6 C -0.196 4.196
7 C 0.369 3.631
8 O -0.419 6.419
9 N -0.375 5.375
10 C -0.010 4.010
11 C 0.026 3.974
12 H 0.113 0.887
13 C -0.220 4.220
14 N -0.393 5.393
15 C 0.319 3.681
16 O -0.387 6.387
17 C -0.305 4.305
18 S 0.168 5.832
19 C -0.684 4.684
20 H 0.091 0.909
21 C -0.136 4.136
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.203 1.203
25 H -0.207 1.207
26 H -0.197 1.197
27 H 0.098 0.902
28 H 0.084 0.916
29 H 0.122 0.878
30 H 0.188 0.812
31 H 0.167 0.833
32 H 0.241 0.759
33 H 0.093 0.907
34 H 0.101 0.899
35 H 0.078 0.922
36 H 0.085 0.915
37 H 0.090 0.910
38 H 0.233 0.767
39 H 0.107 0.893
40 H 0.108 0.892
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -20.689 14.232 -6.716 25.994
hybrid contribution 0.923 -0.355 2.603 2.785
sum -19.767 13.877 -4.112 24.499
Atomic orbital electron populations
1.20643 0.86731 1.04366 1.03611 1.24559 1.01834 0.96916 1.02618
1.83108 0.95147 1.07395 1.70178 1.25451 1.02404 0.97196 1.11532
1.21274 0.94481 0.96618 1.01043 1.20101 0.92803 0.93531 1.13147
1.17543 0.85955 0.83715 0.75863 1.90728 1.14417 1.86174 1.50605
1.45858 1.10530 1.05613 1.75538 1.21720 0.95719 0.80069 1.03479
1.21147 0.90222 0.94314 0.91713 0.88663 1.22113 1.01769 0.95916
1.02191 1.46163 1.10182 1.62772 1.20188 1.20342 0.81447 0.77687
0.88604 1.90712 1.75051 1.39709 1.33272 1.23543 1.02904 1.05169
0.98898 1.85397 0.96074 1.76380 1.25394 1.22858 0.97754 1.44553
1.03251 0.90945 1.24988 0.96422 0.94666 0.97481 1.70011 1.10219
1.37975 1.32057 0.86175 0.78604 0.78909 0.81855 1.20255 1.20739
1.19686 0.90202 0.91565 0.87754 0.81162 0.83261 0.75949 0.90662
0.89861 0.92175 0.91491 0.91024 0.76712 0.89269 0.89208 0.92154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.81 9.60 36.00 0.35 -0.47 16
2 C -0.14 -1.33 6.34 -35.11 -0.22 -1.55 16
3 S 0.18 1.33 22.97 -107.50 -2.47 -1.14 16
4 C -0.23 -1.86 11.12 28.86 0.32 -1.54 16
5 C -0.11 -0.96 9.91 -39.02 -0.39 -1.34 16
6 C -0.18 -1.87 5.98 -104.63 -0.63 -2.49 16
7 C 0.58 6.65 7.79 -12.62 -0.10 6.55 16
8 O -0.54 -7.36 14.06 5.24 0.07 -7.29 16
9 N -0.72 -6.96 5.37 -61.46 -0.33 -7.29 16
10 C 0.11 1.02 5.23 -4.05 -0.02 1.00 16
11 C 0.13 1.35 2.73 -67.93 -0.19 1.16 16
12 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16
13 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16
14 N -0.74 -8.62 4.52 -53.81 -0.24 -8.86 16
15 C 0.53 9.02 7.81 -10.98 -0.09 8.93 16
16 O -0.51 -10.74 15.53 5.56 0.09 -10.65 16
17 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16
18 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16
19 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16
20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16
21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
22 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16
23 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16
24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16
26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.10 1.08 5.93 -51.93 -0.31 0.77 16
30 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16
31 H 0.15 1.18 7.10 -52.48 -0.37 0.81 16
32 H 0.40 3.65 6.68 -40.82 -0.27 3.38 16
33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
38 H 0.40 3.81 8.60 -40.82 -0.35 3.46 16
39 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16
40 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16
41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
LS Contribution 377.60 15.07 5.69 5.69
Total: -1.00 -34.55 377.60 -9.35 -43.90
By element:
Atomic # 1 Polarization: 10.13 SS G_CDS: -5.47 Total: 4.66 kcal
Atomic # 6 Polarization: -6.12 SS G_CDS: -0.19 Total: -6.30 kcal
Atomic # 7 Polarization: -41.31 SS G_CDS: 0.16 Total: -41.15 kcal
Atomic # 8 Polarization: -18.10 SS G_CDS: 0.16 Total: -17.94 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Atomic # 16 Polarization: -0.21 SS G_CDS: -4.68 Total: -4.89 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -34.55 -9.35 -43.90 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001579442727.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.145 kcal
(2) G-P(sol) polarization free energy of solvation -34.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds