Wall clock time and date at job start Sat Apr 11 2020 06:29:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 S 1.70451 * 124.59433 * 2 1
4 4 C 1.75502 * 92.44598 * 180.02562 * 3 2 1
5 5 C 1.32772 * 110.57581 * 359.71024 * 4 3 2
6 6 C 1.36011 * 124.59021 * 180.02562 * 2 1 3
7 7 C 1.47185 * 123.46174 * 359.97438 * 6 2 1
8 8 O 1.21641 * 120.00081 * 0.27253 * 7 6 2
9 9 N 1.34784 * 119.99925 * 180.02562 * 7 6 2
10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6
11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7
12 12 H 1.08998 * 109.47021 * 295.00110 * 11 10 9
13 13 C 1.53004 * 109.47321 * 175.00102 * 11 10 9
14 14 N 1.46498 * 109.47240 * 55.00209 * 11 10 9
15 15 C 1.34776 * 119.99880 * 205.00358 * 14 11 10
16 16 O 1.21281 * 120.00492 * 359.97438 * 15 14 11
17 17 C 1.50706 * 119.99726 * 179.97438 * 15 14 11
18 18 S 1.81001 * 109.46937 * 179.97438 * 17 15 14
19 19 C 1.76198 * 100.00190 * 180.02562 * 18 17 15
20 20 H 1.07999 * 119.99670 * 359.97438 * 19 18 17
21 21 C 1.38797 * 120.00116 * 179.97438 * 19 18 17
22 22 N 1.31624 * 120.00017 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 119.99810 * 179.97438 * 21 19 18
24 24 H 1.48513 * 109.46766 * 90.00421 * 23 21 19
25 25 H 1.48497 * 109.47289 * 210.00177 * 23 21 19
26 26 H 1.48500 * 109.47557 * 330.00570 * 23 21 19
27 27 H 1.08997 * 109.47224 * 269.97469 * 1 2 3
28 28 H 1.09000 * 109.46951 * 29.97482 * 1 2 3
29 29 H 1.08997 * 109.47224 * 149.97670 * 1 2 3
30 30 H 1.08005 * 124.71205 * 179.97438 * 4 3 2
31 31 H 1.08004 * 123.45670 * 180.28403 * 5 4 3
32 32 H 0.96999 * 120.00044 * 359.97438 * 9 7 6
33 33 H 1.09004 * 109.47024 * 300.00310 * 10 9 7
34 34 H 1.09005 * 109.47136 * 59.99926 * 10 9 7
35 35 H 1.08998 * 109.47079 * 299.99972 * 13 11 10
36 36 H 1.09000 * 109.46939 * 60.00079 * 13 11 10
37 37 H 1.08998 * 109.47100 * 179.97438 * 13 11 10
38 38 H 0.96994 * 120.00389 * 24.99655 * 14 11 10
39 39 H 1.08994 * 109.46905 * 299.99507 * 17 15 14
40 40 H 1.08995 * 109.47277 * 59.99864 * 17 15 14
41 41 H 0.97005 * 120.00117 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.4747 1.4031 0.0000
4 6 3.9606 0.4693 -0.0008
5 6 3.6943 -0.8315 0.0053
6 6 2.2791 -1.1197 -0.0005
7 6 1.7290 -2.4849 -0.0006
8 8 0.5246 -2.6553 -0.0052
9 7 2.5598 -3.5462 -0.0006
10 6 2.0122 -4.9050 0.0000
11 6 3.1595 -5.9172 0.0005
12 1 3.7193 -5.8322 -0.9308
13 6 2.5912 -7.3322 0.1267
14 7 4.0496 -5.6458 1.1319
15 6 5.3406 -6.0296 1.0808
16 8 5.7653 -6.6000 0.0984
17 6 6.2564 -5.7498 2.2445
18 16 7.9116 -6.3825 1.8753
19 6 8.7487 -5.9341 3.3594
20 1 8.2152 -5.4224 4.1468
21 6 10.0937 -6.2385 3.5167
22 7 10.7440 -6.8618 2.5569
23 14 10.9814 -5.7625 5.0898
24 1 10.8713 -6.8688 6.0744
25 1 12.4133 -5.5056 4.7920
26 1 10.3651 -4.5348 5.6539
27 1 -0.3633 -0.0005 1.0276
28 1 -0.3633 0.8902 -0.5134
29 1 -0.3633 -0.8897 -0.5142
30 1 4.9538 0.8937 -0.0014
31 1 4.4576 -1.5955 0.0105
32 1 3.5202 -3.4103 -0.0009
33 1 1.4000 -5.0497 0.8902
34 1 1.3995 -5.0502 -0.8898
35 1 2.0314 -7.4171 1.0581
36 1 1.9289 -7.5341 -0.7151
37 1 3.4086 -8.0533 0.1267
38 1 3.7100 -5.1898 1.9177
39 1 6.3080 -4.6747 2.4160
40 1 5.8705 -6.2420 3.1371
41 1 11.6841 -7.0742 2.6666
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001579442727.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:11
Heat of formation + Delta-G solvation = -76.958006 kcal
Electronic energy + Delta-G solvation = -24188.879142 eV
Core-core repulsion = 20513.274714 eV
Total energy + Delta-G solvation = -3675.604428 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.086 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.26092 -40.58210 -38.09958 -37.32639 -34.91307 -34.57458 -32.90576 -32.60866
-30.05832 -28.82778 -27.64709 -26.89291 -24.38113 -22.82190 -22.57167 -21.61065
-20.41042 -19.82807 -18.25350 -18.11301 -17.88843 -17.02561 -16.89403 -16.86659
-16.35977 -16.35388 -15.85556 -15.50252 -14.87008 -14.67786 -14.61657 -14.48700
-14.33106 -14.02403 -13.91848 -13.61592 -13.57311 -13.26244 -13.15261 -13.03915
-12.95403 -12.88706 -12.58489 -12.57019 -12.05945 -12.00629 -11.71421 -11.13776
-10.93970 -10.86281 -10.25913 -10.24403 -10.18459 -9.74860 -9.40191 -8.64609
-8.34106 -6.11202 -0.21205 0.53791 0.93312 0.97134 1.27680 1.42442
1.47531 1.57506 1.61881 2.13149 2.27175 2.29360 2.34998 3.00291
3.32911 3.54883 3.69977 3.83058 3.98207 4.05143 4.16318 4.24566
4.34038 4.38289 4.53298 4.57854 4.62369 4.66770 4.69650 4.74782
4.95070 4.99931 5.05310 5.17788 5.27597 5.27900 5.40607 5.42912
5.47739 6.20562 6.42195 6.47691 7.07787 7.13636 7.23898 8.74859
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.010999 B = 0.002567 C = 0.002162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2545.064736 B =10904.707560 C =12945.697094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.093 4.093
2 C -0.156 4.156
3 S 0.220 5.780
4 C -0.236 4.236
5 C -0.118 4.118
6 C -0.200 4.200
7 C 0.580 3.420
8 O -0.567 6.567
9 N -0.718 5.718
10 C 0.123 3.877
11 C 0.137 3.863
12 H 0.080 0.920
13 C -0.157 4.157
14 N -0.711 5.711
15 C 0.539 3.461
16 O -0.558 6.558
17 C -0.132 4.132
18 S -0.147 6.147
19 C -0.545 4.545
20 H 0.082 0.918
21 C 0.014 3.986
22 N -0.911 5.911
23 Si 0.996 3.004
24 H -0.270 1.270
25 H -0.278 1.278
26 H -0.258 1.258
27 H 0.082 0.918
28 H 0.085 0.915
29 H 0.084 0.916
30 H 0.190 0.810
31 H 0.156 0.844
32 H 0.408 0.592
33 H 0.084 0.916
34 H 0.090 0.910
35 H 0.074 0.926
36 H 0.087 0.913
37 H 0.042 0.958
38 H 0.414 0.586
39 H 0.111 0.889
40 H 0.106 0.894
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.550 15.704 -3.569 26.902
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.277 4.277
3 S 0.486 5.514
4 C -0.371 4.371
5 C -0.146 4.146
6 C -0.217 4.217
7 C 0.367 3.633
8 O -0.449 6.449
9 N -0.370 5.370
10 C -0.001 4.001
11 C 0.032 3.968
12 H 0.099 0.901
13 C -0.216 4.216
14 N -0.366 5.366
15 C 0.325 3.675
16 O -0.436 6.436
17 C -0.283 4.283
18 S 0.080 5.920
19 C -0.693 4.693
20 H 0.100 0.900
21 C -0.191 4.191
22 N -0.547 5.547
23 Si 0.818 3.182
24 H -0.195 1.195
25 H -0.204 1.204
26 H -0.182 1.182
27 H 0.101 0.899
28 H 0.104 0.896
29 H 0.103 0.897
30 H 0.207 0.793
31 H 0.173 0.827
32 H 0.244 0.756
33 H 0.103 0.897
34 H 0.108 0.892
35 H 0.093 0.907
36 H 0.106 0.894
37 H 0.062 0.938
38 H 0.251 0.749
39 H 0.129 0.871
40 H 0.124 0.876
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -21.839 16.090 -5.277 27.634
hybrid contribution 1.132 -0.856 2.109 2.542
sum -20.707 15.234 -3.168 25.901
Atomic orbital electron populations
1.20614 0.86397 1.04370 1.03752 1.24857 1.02574 0.97879 1.02409
1.82937 0.93993 1.05673 1.68777 1.25789 1.03670 0.97116 1.10505
1.21354 0.94046 0.97366 1.01871 1.20185 0.93626 0.93270 1.14637
1.17754 0.85691 0.84403 0.75425 1.90714 1.15463 1.86623 1.52101
1.45835 1.10578 1.05589 1.74949 1.21672 0.94915 0.79210 1.04284
1.21195 0.89977 0.95362 0.90244 0.90145 1.22075 1.01189 0.94352
1.03997 1.45880 1.08456 1.61135 1.21129 1.19980 0.82653 0.77522
0.87318 1.90709 1.76148 1.42070 1.34660 1.23389 0.98500 1.06111
1.00290 1.85556 1.01965 1.77826 1.26647 1.23196 0.98325 1.44376
1.03407 0.90008 1.26088 0.97382 0.94408 1.01210 1.70174 1.10608
1.39436 1.34527 0.84993 0.77103 0.79080 0.77059 1.19484 1.20370
1.18157 0.89949 0.89601 0.89714 0.79316 0.82672 0.75573 0.89743
0.89165 0.90694 0.89397 0.93843 0.74931 0.87076 0.87551 0.92034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.51 9.60 71.23 0.68 -0.83 16
2 C -0.16 -2.80 6.34 25.17 0.16 -2.64 16
3 S 0.22 2.88 22.97 -56.49 -1.30 1.58 16
4 C -0.24 -3.33 11.12 66.64 0.74 -2.59 16
5 C -0.12 -1.99 9.91 22.67 0.22 -1.76 16
6 C -0.20 -3.99 5.98 -19.87 -0.12 -4.11 16
7 C 0.58 12.79 7.79 86.59 0.67 13.47 16
8 O -0.57 -15.21 14.06 -4.16 -0.06 -15.27 16
9 N -0.72 -12.91 5.37 -466.59 -2.50 -15.41 16
10 C 0.12 1.99 5.23 86.38 0.45 2.44 16
11 C 0.14 2.63 2.73 44.99 0.12 2.75 16
12 H 0.08 1.87 7.58 -2.39 -0.02 1.85 16
13 C -0.16 -2.85 9.48 71.98 0.68 -2.17 16
14 N -0.71 -15.47 4.52 -442.54 -2.00 -17.47 16
15 C 0.54 17.93 7.81 87.66 0.68 18.61 16
16 O -0.56 -23.76 15.53 -3.03 -0.05 -23.81 16
17 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16
18 S -0.15 -7.86 20.57 -56.49 -1.16 -9.03 16
19 C -0.55 -30.33 9.50 67.95 0.65 -29.69 16
20 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16
21 C 0.01 0.78 5.49 84.86 0.47 1.25 16
22 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16
23 Si 1.00 42.81 29.55 68.60 2.03 44.84 16
24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
25 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
26 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16
27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
29 H 0.08 1.74 5.93 -2.39 -0.01 1.73 16
30 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16
31 H 0.16 2.29 7.10 -2.91 -0.02 2.27 16
32 H 0.41 6.86 6.68 -92.71 -0.62 6.24 16
33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16
34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16
35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.41 6.83 8.60 -92.71 -0.80 6.03 16
39 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16
40 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16
41 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16
Total: -1.00 -76.94 377.60 0.76 -76.18
By element:
Atomic # 1 Polarization: 23.23 SS G_CDS: -0.34 Total: 22.89 kcal
Atomic # 6 Polarization: -15.56 SS G_CDS: 5.86 Total: -9.70 kcal
Atomic # 7 Polarization: -83.46 SS G_CDS: -4.22 Total: -87.68 kcal
Atomic # 8 Polarization: -38.97 SS G_CDS: -0.11 Total: -39.08 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal
Atomic # 16 Polarization: -4.99 SS G_CDS: -2.46 Total: -7.45 kcal
Total: -76.94 0.76 -76.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001579442727.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.782 kcal
(2) G-P(sol) polarization free energy of solvation -76.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.720 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds