Wall clock time and date at job start Sat Apr 11 2020 06:28:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38001 * 120.01959 * 2 1
4 4 C 1.38243 * 120.20675 * 180.25568 * 3 2 1
5 5 C 1.38855 * 120.25374 * 359.45243 * 4 3 2
6 6 O 1.35912 * 119.98373 * 180.27345 * 5 4 3
7 7 S 1.52204 * 114.00146 * 89.99727 * 6 5 4
8 8 O 1.42105 * 104.27832 * 191.07205 * 7 6 5
9 9 O 1.42105 * 104.27610 * 318.92935 * 7 6 5
10 10 C 1.81398 * 104.44912 * 75.00188 * 7 6 5
11 11 C 1.53003 * 109.47045 * 180.02562 * 10 7 6
12 12 C 1.53001 * 109.46615 * 299.99464 * 11 10 7
13 13 C 1.52992 * 109.47430 * 59.99792 * 11 10 7
14 14 C 1.50706 * 109.46789 * 180.02562 * 11 10 7
15 15 H 1.08000 * 119.99868 * 358.97640 * 14 11 10
16 16 C 1.37873 * 119.99330 * 178.97813 * 14 11 10
17 17 N 1.31520 * 119.99616 * 197.16626 * 16 14 11
18 18 Si 1.86791 * 120.00481 * 17.16381 * 16 14 11
19 19 H 1.48501 * 109.47129 * 85.69888 * 18 16 14
20 20 H 1.48504 * 109.47121 * 205.69619 * 18 16 14
21 21 H 1.48500 * 109.47457 * 325.69972 * 18 16 14
22 22 C 1.38435 * 120.03702 * 0.24669 * 5 4 3
23 23 C 1.39575 * 119.78659 * 0.02947 * 22 5 4
24 24 C 1.47746 * 120.12319 * 180.02562 * 23 22 5
25 25 O 1.21467 * 120.00000 * 177.68404 * 24 23 22
26 26 O 1.34709 * 119.99912 * 357.68541 * 24 23 22
27 27 H 1.09002 * 109.46693 * 262.98731 * 1 2 3
28 28 H 1.08995 * 109.47067 * 22.98388 * 1 2 3
29 29 H 1.09000 * 109.47264 * 142.98421 * 1 2 3
30 30 H 1.07999 * 119.88965 * 0.02562 * 3 2 1
31 31 H 1.08008 * 119.86968 * 179.72255 * 4 3 2
32 32 H 1.09006 * 109.47088 * 300.00076 * 10 7 6
33 33 H 1.08994 * 109.46906 * 59.99934 * 10 7 6
34 34 H 1.08998 * 109.46840 * 73.60484 * 12 11 10
35 35 H 1.09000 * 109.46779 * 193.59189 * 12 11 10
36 36 H 1.08995 * 109.47629 * 313.60121 * 12 11 10
37 37 H 1.09007 * 109.47038 * 59.99507 * 13 11 10
38 38 H 1.08991 * 109.47275 * 180.02562 * 13 11 10
39 39 H 1.09007 * 109.47167 * 300.00180 * 13 11 10
40 40 H 0.97001 * 120.00156 * 179.97438 * 17 16 14
41 41 H 1.08005 * 120.10680 * 180.02562 * 22 5 4
42 42 H 0.96701 * 116.99729 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1975 1.1949 0.0000
4 6 3.5799 1.1994 -0.0053
5 6 4.2834 0.0023 0.0007
6 8 5.6425 0.0132 0.0011
7 16 6.2612 0.0250 1.3916
8 8 7.6363 0.2994 1.1611
9 8 5.4478 0.9270 2.1294
10 6 6.0435 -1.6705 1.9984
11 6 6.6318 -1.7880 3.4059
12 6 8.1231 -1.4486 3.3651
13 6 5.9126 -0.8150 4.3422
14 6 6.4514 -3.1969 3.9096
15 1 5.9510 -3.9303 3.2947
16 6 6.9252 -3.5493 5.1555
17 7 7.0797 -4.8181 5.4655
18 14 7.3479 -2.2250 6.4031
19 1 6.1238 -1.8404 7.1507
20 1 8.3646 -2.7454 7.3523
21 1 7.8913 -1.0362 5.6983
22 6 3.6013 -1.2023 0.0070
23 6 2.2056 -1.2088 0.0066
24 6 1.4700 -2.4901 0.0138
25 8 0.2561 -2.4933 0.0560
26 8 2.1457 -3.6548 -0.0262
27 1 -0.3633 -0.1255 1.0200
28 1 -0.3633 0.9460 -0.4013
29 1 -0.3634 -0.8205 -0.6187
30 1 1.6560 2.1293 0.0004
31 1 4.1147 2.1378 -0.0098
32 1 4.9809 -1.9123 2.0277
33 1 6.5555 -2.3637 1.3311
34 1 8.2476 -0.3733 3.2371
35 1 8.5922 -1.7600 4.2984
36 1 8.5919 -1.9704 2.5309
37 1 4.8501 -1.0569 4.3711
38 1 6.3321 -0.8984 5.3447
39 1 6.0435 0.2039 3.9776
40 1 7.4134 -5.0661 6.3419
41 1 4.1474 -2.1341 0.0122
42 1 1.6211 -4.4671 -0.0200
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001600472965.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:08
Heat of formation + Delta-G solvation = -171.813425 kcal
Electronic energy + Delta-G solvation = -29187.706110 eV
Core-core repulsion = 25032.942820 eV
Total energy + Delta-G solvation = -4154.763290 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.106 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.39460 -41.29503 -39.20328 -38.53928 -38.35035 -37.24260 -37.16392 -34.07229
-33.26677 -32.78233 -29.22375 -28.21524 -28.15154 -27.10010 -25.69680 -23.79441
-23.20750 -21.78751 -21.02666 -19.52397 -19.28695 -18.92860 -18.18076 -18.13155
-17.49517 -17.17740 -16.84103 -16.80120 -16.62720 -16.14929 -15.18686 -15.07869
-14.99160 -14.83266 -14.64822 -14.52900 -14.36740 -14.25795 -14.17735 -13.81025
-13.33330 -13.31391 -13.22151 -12.98585 -12.90292 -12.81028 -12.73608 -12.68697
-12.56809 -12.49296 -12.07210 -11.89712 -11.82076 -11.24340 -11.01398 -10.68086
-10.48327 -10.38026 -9.93386 -8.35317 -6.33219 -1.08866 -0.56707 -0.06140
1.03067 1.30784 1.34735 1.36055 1.43356 1.96404 2.30121 2.35604
2.48584 2.87901 2.98615 3.43104 3.51410 3.63326 3.65221 3.78173
3.92622 4.01420 4.21603 4.26650 4.44171 4.48488 4.55454 4.63270
4.67733 4.71495 4.76497 4.79350 4.83315 4.92731 5.02271 5.11699
5.16903 5.32669 5.34756 5.49107 5.50917 5.62158 5.67453 6.25952
6.68723 6.90657 7.30188 8.80287
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.012593 B = 0.004504 C = 0.003768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2222.955572 B = 6215.671291 C = 7428.752120
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.001 4.001
3 C -0.105 4.105
4 C -0.058 4.058
5 C 0.021 3.979
6 O -0.663 6.663
7 S 2.594 3.406
8 O -0.957 6.957
9 O -0.964 6.964
10 C -0.606 4.606
11 C 0.049 3.951
12 C -0.175 4.175
13 C -0.189 4.189
14 C -0.505 4.505
15 H 0.051 0.949
16 C 0.029 3.971
17 N -0.932 5.932
18 Si 0.912 3.088
19 H -0.275 1.275
20 H -0.305 1.305
21 H -0.220 1.220
22 C -0.073 4.073
23 C -0.133 4.133
24 C 0.533 3.467
25 O -0.520 6.520
26 O -0.509 6.509
27 H 0.082 0.918
28 H 0.098 0.902
29 H 0.087 0.913
30 H 0.189 0.811
31 H 0.162 0.838
32 H 0.141 0.859
33 H 0.146 0.854
34 H 0.050 0.950
35 H 0.057 0.943
36 H 0.065 0.935
37 H 0.070 0.930
38 H 0.048 0.952
39 H 0.067 0.933
40 H 0.266 0.734
41 H 0.162 0.838
42 H 0.436 0.564
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.778 11.402 -13.696 21.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.002 4.002
3 C -0.123 4.123
4 C -0.078 4.078
5 C -0.021 4.021
6 O -0.622 6.622
7 S 2.694 3.306
8 O -0.955 6.955
9 O -0.962 6.962
10 C -0.736 4.736
11 C 0.047 3.953
12 C -0.232 4.232
13 C -0.245 4.245
14 C -0.543 4.543
15 H 0.069 0.931
16 C -0.170 4.170
17 N -0.570 5.570
18 Si 0.741 3.259
19 H -0.202 1.202
20 H -0.234 1.234
21 H -0.144 1.144
22 C -0.093 4.093
23 C -0.134 4.134
24 C 0.378 3.622
25 O -0.412 6.412
26 O -0.323 6.323
27 H 0.101 0.899
28 H 0.116 0.884
29 H 0.106 0.894
30 H 0.206 0.794
31 H 0.180 0.820
32 H 0.160 0.840
33 H 0.164 0.836
34 H 0.069 0.931
35 H 0.076 0.924
36 H 0.084 0.916
37 H 0.089 0.911
38 H 0.066 0.934
39 H 0.085 0.915
40 H 0.075 0.925
41 H 0.179 0.821
42 H 0.299 0.701
Dipole moment (debyes) X Y Z Total
from point charges -12.470 12.316 -13.799 22.307
hybrid contribution 0.350 -1.496 1.119 1.901
sum -12.120 10.820 -12.680 20.610
Atomic orbital electron populations
1.21256 0.87703 1.05110 1.04179 1.20599 0.98525 0.90860 0.90253
1.21389 0.91949 0.99363 0.99572 1.21936 0.95850 0.97504 0.92477
1.18211 0.76433 0.95715 1.11698 1.85742 1.26935 1.92468 1.57034
1.05502 0.74149 0.78280 0.72711 1.93575 1.34125 1.84717 1.83103
1.93562 1.68750 1.62029 1.71870 1.30661 1.11868 1.22655 1.08377
1.18171 0.92143 0.96179 0.88812 1.22678 0.97610 0.99984 1.02944
1.22895 1.02233 0.98977 1.00421 1.20858 1.37886 0.93763 1.01807
0.93083 1.25631 0.94513 0.96615 1.00217 1.70076 1.46478 1.18113
1.22358 0.86780 0.78247 0.81675 0.79168 1.20184 1.23367 1.14398
1.21790 0.94388 0.98210 0.94951 1.18831 0.91915 0.91664 1.11035
1.20616 0.85092 0.84621 0.71879 1.90840 1.15187 1.88036 1.47130
1.84549 1.45472 1.17475 1.84844 0.89917 0.88379 0.89438 0.79371
0.82018 0.84042 0.83616 0.93068 0.92403 0.91634 0.91106 0.93389
0.91483 0.92485 0.82052 0.70121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.79 8.76 71.24 0.62 -1.17 16
2 C 0.00 -0.02 5.92 -19.59 -0.12 -0.14 16
3 C -0.11 -1.57 9.65 22.21 0.21 -1.36 16
4 C -0.06 -1.17 9.04 22.42 0.20 -0.96 16
5 C 0.02 0.53 4.79 22.46 0.11 0.63 16
6 O -0.66 -19.16 10.05 -61.66 -0.62 -19.78 16
7 S 2.59 87.46 4.22 -56.49 -0.24 87.22 16
8 O -0.96 -37.18 16.03 -118.57 -1.90 -39.08 16
9 O -0.96 -33.23 13.88 -118.57 -1.65 -34.88 16
10 C -0.61 -21.51 4.35 71.98 0.31 -21.20 16
11 C 0.05 2.16 0.52 -52.93 -0.03 2.13 16
12 C -0.17 -7.55 6.77 71.98 0.49 -7.06 16
13 C -0.19 -7.87 7.20 71.98 0.52 -7.35 16
14 C -0.50 -26.76 8.61 25.60 0.22 -26.54 16
15 H 0.05 2.92 7.99 -2.91 -0.02 2.89 16
16 C 0.03 1.64 5.24 84.65 0.44 2.08 16
17 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16
18 Si 0.91 43.02 22.89 68.60 1.57 44.59 16
19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
20 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16
21 H -0.22 -9.40 4.68 99.48 0.47 -8.93 16
22 C -0.07 -1.73 8.02 22.64 0.18 -1.55 16
23 C -0.13 -2.90 5.87 -20.11 -0.12 -3.02 16
24 C 0.53 11.59 8.23 70.34 0.58 12.17 16
25 O -0.52 -12.43 14.06 19.94 0.28 -12.15 16
26 O -0.51 -9.39 12.68 -56.18 -0.71 -10.10 16
27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
28 H 0.10 0.78 8.03 -2.39 -0.02 0.76 16
29 H 0.09 1.50 5.78 -2.39 -0.01 1.49 16
30 H 0.19 1.25 8.05 -2.91 -0.02 1.23 16
31 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16
32 H 0.14 4.51 6.60 -2.39 -0.02 4.50 16
33 H 0.15 4.73 8.14 -2.39 -0.02 4.71 16
34 H 0.05 2.03 6.44 -2.39 -0.02 2.02 16
35 H 0.06 2.57 4.46 -2.39 -0.01 2.56 16
36 H 0.06 2.69 8.07 -2.39 -0.02 2.67 16
37 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16
38 H 0.05 2.06 2.31 -2.39 -0.01 2.05 16
39 H 0.07 2.55 5.46 -2.38 -0.01 2.54 16
40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
41 H 0.16 3.58 7.04 -2.91 -0.02 3.56 16
42 H 0.44 4.09 9.11 -74.06 -0.67 3.42 16
Total: -1.00 -73.19 339.77 0.84 -72.35
By element:
Atomic # 1 Polarization: 20.54 SS G_CDS: 0.17 Total: 20.72 kcal
Atomic # 6 Polarization: -56.95 SS G_CDS: 3.63 Total: -53.32 kcal
Atomic # 7 Polarization: -55.87 SS G_CDS: 0.30 Total: -55.57 kcal
Atomic # 8 Polarization: -111.39 SS G_CDS: -4.60 Total: -115.99 kcal
Atomic # 14 Polarization: 43.02 SS G_CDS: 1.57 Total: 44.59 kcal
Atomic # 16 Polarization: 87.46 SS G_CDS: -0.24 Total: 87.22 kcal
Total: -73.19 0.84 -72.35 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600472965.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.462 kcal
(2) G-P(sol) polarization free energy of solvation -73.188 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal
(6) G-S(sol) free energy of system = (1) + (5) -171.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds