Wall clock time and date at job start Sat Apr 11 2020 06:28:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47587 * 2 1
4 4 C 1.50705 * 109.46868 * 240.00236 * 2 1 3
5 5 H 1.08009 * 119.99880 * 240.00050 * 4 2 1
6 6 C 1.37875 * 120.00133 * 60.00379 * 4 2 1
7 7 N 1.31516 * 119.99625 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 120.00013 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47009 * 90.00161 * 8 6 4
10 10 H 1.48500 * 109.46981 * 209.99837 * 8 6 4
11 11 H 1.48502 * 109.47266 * 329.99943 * 8 6 4
12 12 N 1.46502 * 109.47267 * 120.00328 * 2 1 3
13 13 C 1.34774 * 120.00094 * 274.99814 * 12 2 1
14 14 O 1.21356 * 119.99833 * 359.97438 * 13 12 2
15 15 C 1.49332 * 120.00116 * 179.97438 * 13 12 2
16 16 O 1.21392 * 120.00198 * 359.97438 * 15 13 12
17 17 N 1.34774 * 120.00116 * 179.97438 * 15 13 12
18 18 C 1.39939 * 119.99824 * 185.52496 * 17 15 13
19 19 C 1.38407 * 119.97721 * 24.85101 * 18 17 15
20 20 C 1.39702 * 119.81928 * 179.97438 * 19 18 17
21 21 C 1.47456 * 120.11589 * 180.02562 * 20 19 18
22 22 O 1.21505 * 119.99886 * 179.97438 * 21 20 19
23 23 O 1.34744 * 119.99867 * 359.97218 * 21 20 19
24 24 C 1.39989 * 119.77299 * 359.97438 * 20 19 18
25 25 F 1.35093 * 120.02664 * 179.97438 * 24 20 19
26 26 C 1.38198 * 119.94332 * 0.25464 * 24 20 19
27 27 C 1.38394 * 120.18394 * 359.47390 * 26 24 20
28 28 F 1.35100 * 119.88536 * 180.27903 * 27 26 24
29 29 H 1.08999 * 109.46719 * 59.99397 * 1 2 3
30 30 H 1.08995 * 109.47179 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46754 * 299.99932 * 1 2 3
32 32 H 0.97006 * 119.99803 * 180.02562 * 7 6 4
33 33 H 0.97006 * 119.99685 * 94.99212 * 12 2 1
34 34 H 0.96992 * 120.00176 * 5.52905 * 17 15 13
35 35 H 1.07997 * 120.09185 * 0.02562 * 19 18 17
36 36 H 0.96695 * 117.00212 * 179.97438 * 23 21 20
37 37 H 1.08001 * 119.91158 * 179.72500 * 26 24 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1315
6 6 1.6992 -0.2393 -2.4828
7 7 0.9428 0.8298 -2.6033
8 14 2.3224 -1.1194 -4.0080
9 1 1.3447 -2.1613 -4.4125
10 1 2.4872 -0.1400 -5.1120
11 1 3.6308 -1.7565 -3.7121
12 7 2.0183 -0.6907 1.1961
13 6 2.1471 -0.0184 2.3571
14 8 1.8590 1.1592 2.4115
15 6 2.6444 -0.7226 3.5765
16 8 2.9322 -1.9006 3.5222
17 7 2.7737 -0.0502 4.7374
18 6 3.3474 -0.6773 5.8490
19 6 4.2231 -1.7343 5.6713
20 6 4.7944 -2.3576 6.7834
21 6 5.7286 -3.4839 6.6016
22 8 6.2247 -4.0242 7.5703
23 8 6.0322 -3.9139 5.3612
24 6 4.4778 -1.9086 8.0710
25 9 5.0268 -2.5080 9.1500
26 6 3.5985 -0.8555 8.2375
27 6 3.0381 -0.2359 7.1342
28 9 2.1836 0.7967 7.3038
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8901
32 1 0.7081 1.1611 -3.4843
33 1 2.2489 -1.6319 1.1525
34 1 2.4690 0.8684 4.8023
35 1 4.4648 -2.0757 4.6756
36 1 6.6496 -4.6549 5.2923
37 1 3.3511 -0.5124 9.2312
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001609725477.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:31
Heat of formation + Delta-G solvation = -212.375436 kcal
Electronic energy + Delta-G solvation = -28902.686151 eV
Core-core repulsion = 24088.783231 eV
Total energy + Delta-G solvation = -4813.902921 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.091 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.59328 -49.39754 -41.20932 -40.41736 -39.06703 -37.99443 -36.38740 -35.59597
-34.78417 -32.52412 -31.85272 -30.09313 -29.20332 -25.46646 -25.22568 -25.16226
-23.61447 -21.86384 -20.92588 -19.95440 -19.34114 -18.70082 -18.31798 -17.95819
-17.32363 -16.95225 -16.71815 -16.40389 -16.04672 -15.88277 -15.75526 -15.50617
-15.24240 -14.99019 -14.92517 -14.60960 -14.32103 -13.83476 -13.36557 -13.32392
-12.98680 -12.79714 -12.58438 -12.49036 -11.90404 -11.87076 -11.41157 -11.21319
-11.07788 -11.05980 -10.89891 -10.85661 -10.44858 -10.33731 -9.70244 -9.30581
-9.20749 -8.71182 -8.60479 -8.25310 -6.24202 -4.34349 -0.16150 0.38780
1.47908 1.99952 2.23308 2.53409 2.91729 3.19509 3.23201 3.26744
3.29126 3.46901 3.63000 3.75417 3.93840 4.25855 4.35693 4.59933
4.74248 4.90586 5.06213 5.09137 5.24110 5.31063 5.55122 5.68832
6.10742 6.17430 6.62051 6.69779 6.75736 6.93057 7.07517 7.23913
7.49973 7.52135 7.57603 7.72295 7.96942 8.28873 8.48057 8.74740
9.33129 10.81798
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.016698 B = 0.002584 C = 0.002270
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1676.476362 B =10831.625346 C =12334.062347
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.262 3.738
3 H 0.056 0.944
4 C -0.539 4.539
5 H 0.065 0.935
6 C 0.068 3.932
7 N -0.883 5.883
8 Si 0.905 3.095
9 H -0.278 1.278
10 H -0.284 1.284
11 H -0.272 1.272
12 N -0.664 5.664
13 C 0.496 3.504
14 O -0.530 6.530
15 C 0.511 3.489
16 O -0.496 6.496
17 N -0.645 5.645
18 C 0.103 3.897
19 C -0.022 4.022
20 C -0.154 4.154
21 C 0.533 3.467
22 O -0.501 6.501
23 O -0.502 6.502
24 C 0.175 3.825
25 F -0.106 7.106
26 C -0.181 4.181
27 C 0.140 3.860
28 F -0.116 7.116
29 H 0.095 0.905
30 H 0.031 0.969
31 H 0.017 0.983
32 H 0.266 0.734
33 H 0.403 0.597
34 H 0.431 0.569
35 H 0.184 0.816
36 H 0.419 0.581
37 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.183 -4.259 19.198 20.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.161 3.839
3 H 0.073 0.927
4 C -0.577 4.577
5 H 0.083 0.917
6 C -0.135 4.135
7 N -0.520 5.520
8 Si 0.732 3.268
9 H -0.204 1.204
10 H -0.210 1.210
11 H -0.197 1.197
12 N -0.313 5.313
13 C 0.274 3.726
14 O -0.409 6.409
15 C 0.295 3.705
16 O -0.369 6.369
17 N -0.292 5.292
18 C 0.006 3.994
19 C -0.042 4.042
20 C -0.157 4.157
21 C 0.376 3.624
22 O -0.391 6.391
23 O -0.314 6.314
24 C 0.154 3.846
25 F -0.084 7.084
26 C -0.201 4.201
27 C 0.117 3.883
28 F -0.094 7.094
29 H 0.114 0.886
30 H 0.050 0.950
31 H 0.036 0.964
32 H 0.076 0.924
33 H 0.238 0.762
34 H 0.270 0.730
35 H 0.201 0.799
36 H 0.278 0.722
37 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 5.911 -3.913 19.227 20.492
hybrid contribution 0.500 -0.783 -0.536 1.072
sum 6.410 -4.696 18.691 20.310
Atomic orbital electron populations
1.22112 0.97710 0.99664 1.01318 1.19024 0.91510 0.94173 0.79176
0.92660 1.21180 1.32990 1.13564 0.89958 0.91663 1.24876 0.94647
0.94891 0.99133 1.69889 1.35587 1.22306 1.24191 0.86382 0.79287
0.79250 0.81842 1.20423 1.21002 1.19701 1.46537 1.60941 1.14576
1.09214 1.19471 0.81532 0.87303 0.84299 1.90759 1.50553 1.15067
1.84499 1.21164 0.77848 0.86882 0.84654 1.90718 1.46709 1.15040
1.84477 1.43168 1.59404 1.18003 1.08644 1.17672 0.98050 0.98043
0.85652 1.21640 0.89889 0.91789 1.00888 1.18989 1.04045 1.00175
0.92529 1.20253 0.79238 0.81936 0.80971 1.90969 1.50934 1.56168
1.40981 1.84591 1.63349 1.52721 1.30705 1.17147 0.93394 0.91852
0.82211 1.91634 1.82943 1.81577 1.52257 1.20773 1.00911 0.98207
1.00184 1.17225 0.91578 0.87952 0.91519 1.91584 1.66970 1.54877
1.96018 0.88625 0.95012 0.96416 0.92371 0.76198 0.73012 0.79931
0.72181 0.81697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.48 9.26 37.16 0.34 -3.13 16
2 C 0.26 6.23 2.56 -69.08 -0.18 6.05 16
3 H 0.06 1.49 7.58 -51.93 -0.39 1.09 16
4 C -0.54 -13.59 8.73 -34.44 -0.30 -13.89 16
5 H 0.07 1.58 7.74 -52.48 -0.41 1.18 16
6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16
7 N -0.88 -23.68 11.32 55.43 0.63 -23.05 16
8 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16
9 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16
10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
11 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16
12 N -0.66 -13.10 5.06 -55.40 -0.28 -13.38 16
13 C 0.50 9.02 7.85 -11.64 -0.09 8.93 16
14 O -0.53 -10.82 16.15 5.49 0.09 -10.73 16
15 C 0.51 7.55 7.69 -11.64 -0.09 7.46 16
16 O -0.50 -7.65 13.64 5.46 0.07 -7.57 16
17 N -0.65 -7.75 5.29 -10.27 -0.05 -7.81 16
18 C 0.10 1.10 6.43 -83.68 -0.54 0.56 16
19 C -0.02 -0.24 8.28 -38.97 -0.32 -0.56 16
20 C -0.15 -1.63 5.88 -104.94 -0.62 -2.25 16
21 C 0.53 5.83 8.26 34.49 0.28 6.12 16
22 O -0.50 -6.67 16.11 -19.27 -0.31 -6.98 16
23 O -0.50 -4.32 12.67 -40.61 -0.51 -4.84 16
24 C 0.18 1.71 7.28 -38.94 -0.28 1.43 16
25 F -0.11 -1.17 15.53 2.25 0.03 -1.14 16
26 C -0.18 -1.43 9.98 -39.54 -0.39 -1.83 16
27 C 0.14 1.27 7.31 -39.11 -0.29 0.99 16
28 F -0.12 -1.07 16.80 2.25 0.04 -1.03 16
29 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16
30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16
32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16
33 H 0.40 7.31 8.01 -40.82 -0.33 6.98 16
34 H 0.43 4.74 7.92 -40.82 -0.32 4.42 16
35 H 0.18 2.21 5.32 -52.49 -0.28 1.93 16
36 H 0.42 1.63 9.11 45.56 0.42 2.04 16
37 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16
LS Contribution 342.64 15.07 5.16 5.16
Total: -1.00 -30.35 342.64 -4.75 -35.10
By element:
Atomic # 1 Polarization: 11.90 SS G_CDS: -2.03 Total: 9.87 kcal
Atomic # 6 Polarization: 14.10 SS G_CDS: -2.57 Total: 11.53 kcal
Atomic # 7 Polarization: -44.53 SS G_CDS: 0.29 Total: -44.24 kcal
Atomic # 8 Polarization: -29.46 SS G_CDS: -0.66 Total: -30.12 kcal
Atomic # 9 Polarization: -2.24 SS G_CDS: 0.07 Total: -2.17 kcal
Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -30.35 -4.75 -35.10 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001609725477.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -177.276 kcal
(2) G-P(sol) polarization free energy of solvation -30.348 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.624 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) -212.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds