Wall clock time and date at job start Sat Apr 11 2020 06:28:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47587 * 2 1
4 4 C 1.50705 * 109.46868 * 240.00236 * 2 1 3
5 5 H 1.08009 * 119.99880 * 240.00050 * 4 2 1
6 6 C 1.37875 * 120.00133 * 60.00379 * 4 2 1
7 7 N 1.31516 * 119.99625 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 120.00013 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47009 * 90.00161 * 8 6 4
10 10 H 1.48500 * 109.46981 * 209.99837 * 8 6 4
11 11 H 1.48502 * 109.47266 * 329.99943 * 8 6 4
12 12 N 1.46502 * 109.47267 * 120.00328 * 2 1 3
13 13 C 1.34774 * 120.00094 * 274.99814 * 12 2 1
14 14 O 1.21356 * 119.99833 * 359.97438 * 13 12 2
15 15 C 1.49332 * 120.00116 * 179.97438 * 13 12 2
16 16 O 1.21392 * 120.00198 * 359.97438 * 15 13 12
17 17 N 1.34774 * 120.00116 * 179.97438 * 15 13 12
18 18 C 1.39939 * 119.99824 * 185.52496 * 17 15 13
19 19 C 1.38407 * 119.97721 * 24.85101 * 18 17 15
20 20 C 1.39702 * 119.81928 * 179.97438 * 19 18 17
21 21 C 1.47456 * 120.11589 * 180.02562 * 20 19 18
22 22 O 1.21505 * 119.99886 * 179.97438 * 21 20 19
23 23 O 1.34744 * 119.99867 * 359.97218 * 21 20 19
24 24 C 1.39989 * 119.77299 * 359.97438 * 20 19 18
25 25 F 1.35093 * 120.02664 * 179.97438 * 24 20 19
26 26 C 1.38198 * 119.94332 * 0.25464 * 24 20 19
27 27 C 1.38394 * 120.18394 * 359.47390 * 26 24 20
28 28 F 1.35100 * 119.88536 * 180.27903 * 27 26 24
29 29 H 1.08999 * 109.46719 * 59.99397 * 1 2 3
30 30 H 1.08995 * 109.47179 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46754 * 299.99932 * 1 2 3
32 32 H 0.97006 * 119.99803 * 180.02562 * 7 6 4
33 33 H 0.97006 * 119.99685 * 94.99212 * 12 2 1
34 34 H 0.96992 * 120.00176 * 5.52905 * 17 15 13
35 35 H 1.07997 * 120.09185 * 0.02562 * 19 18 17
36 36 H 0.96695 * 117.00212 * 179.97438 * 23 21 20
37 37 H 1.08001 * 119.91158 * 179.72500 * 26 24 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1315
6 6 1.6992 -0.2393 -2.4828
7 7 0.9428 0.8298 -2.6033
8 14 2.3224 -1.1194 -4.0080
9 1 1.3447 -2.1613 -4.4125
10 1 2.4872 -0.1400 -5.1120
11 1 3.6308 -1.7565 -3.7121
12 7 2.0183 -0.6907 1.1961
13 6 2.1471 -0.0184 2.3571
14 8 1.8590 1.1592 2.4115
15 6 2.6444 -0.7226 3.5765
16 8 2.9322 -1.9006 3.5222
17 7 2.7737 -0.0502 4.7374
18 6 3.3474 -0.6773 5.8490
19 6 4.2231 -1.7343 5.6713
20 6 4.7944 -2.3576 6.7834
21 6 5.7286 -3.4839 6.6016
22 8 6.2247 -4.0242 7.5703
23 8 6.0322 -3.9139 5.3612
24 6 4.4778 -1.9086 8.0710
25 9 5.0268 -2.5080 9.1500
26 6 3.5985 -0.8555 8.2375
27 6 3.0381 -0.2359 7.1342
28 9 2.1836 0.7967 7.3038
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8901
32 1 0.7081 1.1611 -3.4843
33 1 2.2489 -1.6319 1.1525
34 1 2.4690 0.8684 4.8023
35 1 4.4648 -2.0757 4.6756
36 1 6.6496 -4.6549 5.2923
37 1 3.3511 -0.5124 9.2312
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001609725477.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:30
Heat of formation + Delta-G solvation = -234.305476 kcal
Electronic energy + Delta-G solvation = -28903.637109 eV
Core-core repulsion = 24088.783231 eV
Total energy + Delta-G solvation = -4814.853879 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.091 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-50.34753 -50.21480 -42.30915 -41.34248 -40.29042 -39.12941 -37.19840 -37.07838
-36.09140 -34.34350 -32.63124 -31.26115 -30.75757 -27.36986 -26.46639 -26.03187
-24.58397 -23.01558 -22.20109 -21.37680 -20.57113 -19.49252 -19.39710 -18.88885
-18.33445 -17.93006 -17.90070 -17.47204 -17.30533 -17.07015 -16.93223 -16.71028
-16.32471 -16.09196 -15.82510 -15.68361 -15.42807 -15.20923 -14.87853 -14.43738
-14.17081 -13.82788 -13.76649 -13.62849 -13.37252 -13.06991 -12.89474 -12.78367
-12.67726 -12.58279 -12.29630 -12.13054 -11.97403 -11.78813 -11.14364 -10.76659
-10.61558 -10.41841 -9.99493 -9.49021 -8.19424 -6.36459 -0.97096 -0.44434
0.28555 1.04084 1.16768 1.47149 1.48387 1.58401 1.81541 1.98507
2.21044 2.37015 2.45205 2.55488 2.85855 3.11928 3.16800 3.41080
3.54189 3.83292 4.04373 4.29036 4.44732 4.52601 4.69594 4.72100
4.83728 4.89652 5.02714 5.30334 5.31965 5.41843 5.43992 5.58516
5.69322 5.83139 6.04815 6.33338 6.64094 6.70387 6.84323 7.05403
7.35932 8.86603
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.016698 B = 0.002584 C = 0.002270
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1676.476362 B =10831.625346 C =12334.062347
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.269 3.731
3 H 0.017 0.983
4 C -0.552 4.552
5 H 0.073 0.927
6 C 0.020 3.980
7 N -0.913 5.913
8 Si 0.970 3.030
9 H -0.272 1.272
10 H -0.285 1.285
11 H -0.265 1.265
12 N -0.667 5.667
13 C 0.497 3.503
14 O -0.554 6.554
15 C 0.524 3.476
16 O -0.502 6.502
17 N -0.632 5.632
18 C 0.089 3.911
19 C -0.022 4.022
20 C -0.162 4.162
21 C 0.536 3.464
22 O -0.530 6.530
23 O -0.500 6.500
24 C 0.175 3.825
25 F -0.113 7.113
26 C -0.159 4.159
27 C 0.153 3.847
28 F -0.113 7.113
29 H 0.072 0.928
30 H 0.040 0.960
31 H 0.021 0.979
32 H 0.267 0.733
33 H 0.412 0.588
34 H 0.436 0.564
35 H 0.172 0.828
36 H 0.438 0.562
37 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.616 -5.060 20.409 22.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.166 3.834
3 H 0.035 0.965
4 C -0.590 4.590
5 H 0.091 0.909
6 C -0.180 4.180
7 N -0.551 5.551
8 Si 0.795 3.205
9 H -0.198 1.198
10 H -0.211 1.211
11 H -0.190 1.190
12 N -0.317 5.317
13 C 0.277 3.723
14 O -0.434 6.434
15 C 0.307 3.693
16 O -0.376 6.376
17 N -0.279 5.279
18 C -0.007 4.007
19 C -0.042 4.042
20 C -0.165 4.165
21 C 0.381 3.619
22 O -0.422 6.422
23 O -0.314 6.314
24 C 0.154 3.846
25 F -0.091 7.091
26 C -0.178 4.178
27 C 0.130 3.870
28 F -0.091 7.091
29 H 0.091 0.909
30 H 0.059 0.941
31 H 0.041 0.959
32 H 0.076 0.924
33 H 0.248 0.752
34 H 0.276 0.724
35 H 0.189 0.811
36 H 0.301 0.699
37 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges 6.366 -4.735 20.471 21.954
hybrid contribution 0.392 -0.500 -0.815 1.033
sum 6.758 -5.235 19.656 21.434
Atomic orbital electron populations
1.21943 0.97472 0.99880 1.00381 1.18623 0.91657 0.92463 0.80614
0.96514 1.21507 1.33018 1.13790 0.90668 0.90924 1.25705 0.94773
0.95506 1.02060 1.70018 1.36637 1.23630 1.24810 0.85368 0.78975
0.78076 0.78087 1.19794 1.21117 1.18960 1.46251 1.61594 1.14901
1.08906 1.19955 0.80456 0.86999 0.84934 1.90742 1.51239 1.16276
1.85114 1.20230 0.78285 0.86487 0.84325 1.90734 1.47301 1.15024
1.84543 1.42940 1.58757 1.18077 1.08153 1.17719 0.98765 0.98556
0.85658 1.21434 0.90254 0.92013 1.00499 1.19029 1.04279 1.00306
0.92872 1.20328 0.78819 0.81706 0.81091 1.90957 1.52149 1.57188
1.41875 1.84565 1.63755 1.53568 1.29502 1.17278 0.93521 0.92120
0.81688 1.91624 1.83141 1.81817 1.52483 1.20987 0.99038 0.96614
1.01192 1.17158 0.91167 0.87647 0.90997 1.91604 1.66845 1.54732
1.95944 0.90891 0.94074 0.95947 0.92359 0.75163 0.72392 0.81056
0.69941 0.78503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.51 9.26 71.98 0.67 -5.84 16
2 C 0.27 13.02 2.56 44.25 0.11 13.13 16
3 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16
4 C -0.55 -27.92 8.73 25.60 0.22 -27.70 16
5 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16
6 C 0.02 1.05 5.30 84.65 0.45 1.49 16
7 N -0.91 -49.76 11.32 21.45 0.24 -49.51 16
8 Si 0.97 40.52 29.54 68.60 2.03 42.54 16
9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
10 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16
11 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16
12 N -0.67 -26.39 5.06 -447.55 -2.27 -28.66 16
13 C 0.50 18.03 7.85 87.23 0.68 18.72 16
14 O -0.55 -22.81 16.15 -3.26 -0.05 -22.86 16
15 C 0.52 15.03 7.69 87.23 0.67 15.70 16
16 O -0.50 -14.95 13.64 -3.38 -0.05 -14.99 16
17 N -0.63 -14.36 5.29 -304.74 -1.61 -15.97 16
18 C 0.09 1.75 6.43 38.16 0.25 1.99 16
19 C -0.02 -0.45 8.28 22.66 0.19 -0.26 16
20 C -0.16 -3.20 5.88 -20.07 -0.12 -3.31 16
21 C 0.54 11.21 8.26 70.25 0.58 11.80 16
22 O -0.53 -13.70 16.11 19.82 0.32 -13.38 16
23 O -0.50 -8.03 12.67 -56.55 -0.72 -8.75 16
24 C 0.17 3.04 7.28 22.68 0.17 3.20 16
25 F -0.11 -2.29 15.53 44.97 0.70 -1.59 16
26 C -0.16 -2.01 9.98 22.30 0.22 -1.78 16
27 C 0.15 2.37 7.31 22.58 0.17 2.53 16
28 F -0.11 -1.76 16.80 44.97 0.76 -1.01 16
29 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16
30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16
32 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16
33 H 0.41 14.78 8.01 -92.70 -0.74 14.03 16
34 H 0.44 9.04 7.92 -92.71 -0.73 8.30 16
35 H 0.17 3.99 5.32 -2.91 -0.02 3.98 16
36 H 0.44 2.84 9.11 -74.06 -0.67 2.16 16
37 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16
Total: -1.00 -65.06 342.64 2.67 -62.40
By element:
Atomic # 1 Polarization: 23.04 SS G_CDS: -0.93 Total: 22.11 kcal
Atomic # 6 Polarization: 25.42 SS G_CDS: 4.26 Total: 29.67 kcal
Atomic # 7 Polarization: -90.51 SS G_CDS: -3.64 Total: -94.14 kcal
Atomic # 8 Polarization: -59.49 SS G_CDS: -0.50 Total: -59.99 kcal
Atomic # 9 Polarization: -4.05 SS G_CDS: 1.45 Total: -2.60 kcal
Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal
Total: -65.06 2.67 -62.40 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001609725477.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -171.910 kcal
(2) G-P(sol) polarization free energy of solvation -65.065 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) -234.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds