Wall clock time and date at job start Sat Apr 11 2020 06:30:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86802 * 120.00425 * 2 1
4 4 H 1.48505 * 109.46809 * 270.00513 * 3 2 1
5 5 H 1.48497 * 109.46802 * 29.99793 * 3 2 1
6 6 H 1.48490 * 109.47397 * 150.00270 * 3 2 1
7 7 C 1.37887 * 119.99751 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00130 * 0.02562 * 7 2 1
9 9 C 1.50703 * 119.99743 * 179.97438 * 7 2 1
10 10 C 1.52998 * 109.46962 * 180.02562 * 9 7 2
11 11 C 1.52994 * 109.47095 * 179.97438 * 10 9 7
12 12 N 1.46506 * 109.47113 * 179.97438 * 11 10 9
13 13 S 1.65598 * 119.99836 * 165.00286 * 12 11 10
14 14 O 1.42105 * 104.27847 * 308.92659 * 13 12 11
15 15 O 1.42103 * 104.27538 * 181.07116 * 13 12 11
16 16 C 1.81397 * 104.45365 * 64.99857 * 13 12 11
17 17 C 1.53002 * 109.47290 * 179.97438 * 16 13 12
18 18 C 1.50700 * 109.46835 * 180.02562 * 17 16 13
19 19 C 1.38256 * 119.99693 * 97.31776 * 18 17 16
20 20 C 1.38219 * 119.99704 * 179.72185 * 19 18 17
21 21 C 1.38259 * 119.99729 * 0.27745 * 20 19 18
22 22 C 1.38206 * 120.00459 * 359.97091 * 21 20 19
23 23 C 1.38214 * 119.99999 * 277.50371 * 18 17 16
24 24 N 1.48017 * 120.00039 * 0.04239 * 23 18 17
25 25 O 1.21804 * 119.99570 * 186.24778 * 24 23 18
26 26 O 1.21799 * 120.00050 * 6.25535 * 24 23 18
27 27 H 0.96996 * 119.99374 * 359.97438 * 1 2 3
28 28 H 1.08999 * 109.47190 * 60.00263 * 9 7 2
29 29 H 1.09001 * 109.47208 * 300.00237 * 9 7 2
30 30 H 1.08999 * 109.47218 * 59.99955 * 10 9 7
31 31 H 1.09001 * 109.47087 * 299.99986 * 10 9 7
32 32 H 1.08999 * 109.47091 * 59.99918 * 11 10 9
33 33 H 1.08993 * 109.47460 * 299.99971 * 11 10 9
34 34 H 0.96996 * 119.99980 * 344.99511 * 12 11 10
35 35 H 1.09004 * 109.47113 * 60.00039 * 16 13 12
36 36 H 1.09003 * 109.47225 * 300.00149 * 16 13 12
37 37 H 1.09004 * 109.46788 * 60.00113 * 17 16 13
38 38 H 1.08997 * 109.46961 * 300.00154 * 17 16 13
39 39 H 1.07997 * 120.00392 * 359.97438 * 19 18 17
40 40 H 1.07999 * 119.99803 * 180.24851 * 20 19 18
41 41 H 1.08002 * 119.99562 * 179.97438 * 21 20 19
42 42 H 1.08000 * 120.00541 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.6999
7 6 2.0045 -1.1942 -0.0005
8 1 1.4645 -2.1294 -0.0014
9 6 3.5115 -1.1942 -0.0011
10 6 4.0215 -2.6367 -0.0023
11 6 5.5514 -2.6367 -0.0035
12 7 6.0398 -4.0180 -0.0040
13 16 7.6215 -4.3368 -0.3764
14 8 7.8382 -3.6508 -1.6019
15 8 7.7206 -5.7524 -0.3019
16 6 8.5673 -3.5611 0.9631
17 6 10.0622 -3.7894 0.7305
18 6 10.8478 -3.1454 1.8437
19 6 11.2810 -3.9062 2.9137
20 6 12.0065 -3.3168 3.9319
21 6 12.2939 -1.9653 3.8831
22 6 11.8564 -1.2037 2.8160
23 6 11.1318 -1.7936 1.7968
24 7 10.6635 -0.9781 0.6537
25 8 11.0089 0.1856 0.5540
26 8 9.9328 -1.4708 -0.1870
27 1 -0.4849 0.8401 0.0004
28 1 3.8752 -0.6806 0.8888
29 1 3.8746 -0.6801 -0.8911
30 1 3.6578 -3.1499 -0.8924
31 1 3.6585 -3.1511 0.8875
32 1 5.9155 -2.1233 0.8864
33 1 5.9141 -2.1224 -0.8935
34 1 5.4366 -4.7457 0.2139
35 1 8.2766 -4.0030 1.9162
36 1 8.3612 -2.4909 0.9809
37 1 10.3531 -3.3478 -0.2227
38 1 10.2679 -4.8596 0.7130
39 1 11.0562 -4.9618 2.9520
40 1 12.3484 -3.9118 4.7658
41 1 12.8604 -1.5046 4.6789
42 1 12.0805 -0.1479 2.7781
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000179546142.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:47
Heat of formation + Delta-G solvation = -83.420330 kcal
Electronic energy + Delta-G solvation = -27420.258424 eV
Core-core repulsion = 23301.620897 eV
Total energy + Delta-G solvation = -4118.637527 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-43.34541 -40.54268 -38.22024 -37.88293 -37.42773 -37.01484 -35.50165 -35.11755
-32.96425 -32.93730 -31.23090 -28.54015 -27.65971 -25.59655 -24.47355 -23.71852
-22.76633 -22.09868 -20.28312 -20.07708 -19.63949 -18.98649 -18.75862 -18.52943
-17.59251 -17.35743 -17.02989 -16.78891 -16.30315 -16.14049 -15.70216 -15.68157
-15.00519 -14.81965 -14.68871 -14.54556 -14.07746 -13.82053 -13.52099 -13.28777
-13.26508 -13.21001 -13.09364 -12.99826 -12.77145 -12.70099 -12.64243 -12.55629
-12.25504 -11.89481 -11.81930 -11.65417 -11.61198 -11.46641 -11.30351 -10.75091
-10.60262 -10.41573 -10.17221 -8.28379 -6.32236 -1.27474 -0.77593 -0.05160
0.27904 0.40419 1.38626 1.39416 1.50940 1.72165 2.28575 2.37446
2.74485 3.07577 3.19078 3.24181 3.30964 3.52446 3.69239 3.85496
3.96463 4.00527 4.03101 4.16521 4.23805 4.34137 4.39354 4.46190
4.63847 4.68781 4.72458 4.87942 4.91719 5.04049 5.06799 5.11655
5.13912 5.23167 5.52642 5.55973 5.59889 5.67678 6.08252 6.29753
6.43130 6.76217 7.32390 8.88406
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.011459 B = 0.002941 C = 0.002582
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2442.908893 B = 9518.862110 C =10839.929522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C 0.003 3.997
3 Si 0.948 3.052
4 H -0.270 1.270
5 H -0.284 1.284
6 H -0.242 1.242
7 C -0.532 4.532
8 H 0.034 0.966
9 C -0.016 4.016
10 C -0.102 4.102
11 C 0.114 3.886
12 N -1.114 6.114
13 S 2.624 3.376
14 O -0.985 6.985
15 O -0.983 6.983
16 C -0.605 4.605
17 C -0.098 4.098
18 C -0.019 4.019
19 C -0.115 4.115
20 C -0.047 4.047
21 C -0.112 4.112
22 C -0.063 4.063
23 C -0.069 4.069
24 N 0.029 4.971
25 O -0.190 6.190
26 O -0.183 6.183
27 H 0.266 0.734
28 H 0.030 0.970
29 H 0.019 0.981
30 H 0.052 0.948
31 H 0.068 0.932
32 H 0.083 0.917
33 H 0.071 0.929
34 H 0.423 0.577
35 H 0.169 0.831
36 H 0.130 0.870
37 H 0.096 0.904
38 H 0.123 0.877
39 H 0.178 0.822
40 H 0.185 0.815
41 H 0.180 0.820
42 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 32.712 -9.164 13.758 36.651
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.194 4.194
3 Si 0.771 3.229
4 H -0.195 1.195
5 H -0.210 1.210
6 H -0.165 1.165
7 C -0.570 4.570
8 H 0.052 0.948
9 C -0.054 4.054
10 C -0.141 4.141
11 C -0.012 4.012
12 N -0.875 5.875
13 S 2.719 3.281
14 O -0.975 6.975
15 O -0.973 6.973
16 C -0.736 4.736
17 C -0.137 4.137
18 C -0.022 4.022
19 C -0.133 4.133
20 C -0.064 4.064
21 C -0.130 4.130
22 C -0.083 4.083
23 C -0.153 4.153
24 N 0.539 4.461
25 O -0.401 6.401
26 O -0.393 6.393
27 H 0.075 0.925
28 H 0.048 0.952
29 H 0.037 0.963
30 H 0.071 0.929
31 H 0.086 0.914
32 H 0.101 0.899
33 H 0.090 0.910
34 H 0.259 0.741
35 H 0.187 0.813
36 H 0.149 0.851
37 H 0.115 0.885
38 H 0.141 0.859
39 H 0.196 0.804
40 H 0.202 0.798
41 H 0.198 0.802
42 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 33.177 -9.764 13.438 37.103
hybrid contribution -1.002 1.382 -0.233 1.723
sum 32.175 -8.382 13.205 35.775
Atomic orbital electron populations
1.70069 1.08325 1.28125 1.52834 1.26022 0.95603 1.03541 0.94202
0.85691 0.79695 0.78309 0.79185 1.19536 1.20971 1.16523 1.21506
0.92163 0.93132 1.50176 0.94799 1.19540 0.93964 0.94833 0.97109
1.21493 0.92805 0.97833 1.01964 1.21427 0.95981 0.81254 1.02506
1.55361 1.28518 1.14921 1.88656 1.04374 0.73831 0.73593 0.76276
1.93585 1.85091 1.76390 1.42405 1.93558 1.86102 1.29657 1.88024
1.30431 1.07005 1.15199 1.20975 1.20799 0.90274 1.03996 0.98618
1.19703 0.95307 0.90015 0.97136 1.21666 0.97846 1.02261 0.91559
1.22199 0.91390 0.94945 0.97901 1.21720 0.99607 0.94270 0.97436
1.21392 0.92740 1.02826 0.91295 1.21340 1.10821 0.92216 0.90918
1.44139 0.98632 1.01208 1.02156 1.94516 1.61102 1.01840 1.82624
1.94543 1.33272 1.74129 1.37325 0.92538 0.95206 0.96273 0.92872
0.91368 0.89885 0.91045 0.74091 0.81333 0.85125 0.88542 0.85860
0.80423 0.79782 0.80230 0.82676
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16
2 C 0.00 0.17 5.47 84.66 0.46 0.63 16
3 Si 0.95 44.72 27.47 68.60 1.88 46.60 16
4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16
5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16
6 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16
7 C -0.53 -30.73 9.66 25.60 0.25 -30.48 16
8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16
9 C -0.02 -0.74 4.04 29.85 0.12 -0.62 16
10 C -0.10 -3.77 5.29 30.59 0.16 -3.61 16
11 C 0.11 3.34 6.13 86.38 0.53 3.87 16
12 N -1.11 -27.43 5.89 -187.50 -1.10 -28.54 16
13 S 2.62 63.51 5.46 -56.49 -0.31 63.20 16
14 O -0.98 -32.75 17.50 -127.65 -2.23 -34.99 16
15 O -0.98 -26.76 18.08 -127.65 -2.31 -29.07 16
16 C -0.60 -10.04 5.57 71.98 0.40 -9.64 16
17 C -0.10 -1.52 4.61 29.85 0.14 -1.38 16
18 C -0.02 -0.25 5.13 -19.87 -0.10 -0.35 16
19 C -0.12 -0.58 9.67 22.27 0.22 -0.36 16
20 C -0.05 -0.05 10.05 22.27 0.22 0.17 16
21 C -0.11 -0.38 10.05 22.27 0.22 -0.16 16
22 C -0.06 -0.70 9.56 22.27 0.21 -0.49 16
23 C -0.07 -1.19 6.83 36.38 0.25 -0.95 16
24 N 0.03 0.73 4.45 -46.46 -0.21 0.52 16
25 O -0.19 -5.29 18.46 18.88 0.35 -4.94 16
26 O -0.18 -5.28 13.58 18.89 0.26 -5.02 16
27 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16
28 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16
29 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16
30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16
32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
33 H 0.07 2.24 7.69 -2.39 -0.02 2.22 16
34 H 0.42 9.25 8.62 -96.75 -0.83 8.41 16
35 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16
36 H 0.13 2.47 6.65 -2.39 -0.02 2.46 16
37 H 0.10 1.92 5.91 -2.39 -0.01 1.91 16
38 H 0.12 1.16 8.03 -2.39 -0.02 1.14 16
39 H 0.18 -0.12 8.05 -2.91 -0.02 -0.14 16
40 H 0.18 -1.15 8.06 -2.91 -0.02 -1.18 16
41 H 0.18 -0.55 8.06 -2.91 -0.02 -0.57 16
42 H 0.16 1.58 7.62 -2.91 -0.02 1.56 16
Total: -1.00 -86.55 370.00 -0.12 -86.67
By element:
Atomic # 1 Polarization: 8.88 SS G_CDS: 0.16 Total: 9.04 kcal
Atomic # 6 Polarization: -46.44 SS G_CDS: 3.08 Total: -43.35 kcal
Atomic # 7 Polarization: -87.13 SS G_CDS: -1.01 Total: -88.14 kcal
Atomic # 8 Polarization: -70.08 SS G_CDS: -3.94 Total: -74.01 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal
Atomic # 16 Polarization: 63.51 SS G_CDS: -0.31 Total: 63.20 kcal
Total: -86.55 -0.12 -86.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000179546142.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.250 kcal
(2) G-P(sol) polarization free energy of solvation -86.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.296 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds