Wall clock time and date at job start Sat Apr 11 2020 06:30:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45200 * 109.46851 * 2 1
4 4 C 1.34236 * 116.99882 * 179.97438 * 3 2 1
5 5 O 1.20823 * 119.99957 * 359.97438 * 4 3 2
6 6 C 1.50694 * 119.99849 * 180.02562 * 4 3 2
7 7 C 1.53000 * 109.47006 * 180.02562 * 6 4 3
8 8 H 1.09001 * 109.47192 * 54.99985 * 7 6 4
9 9 C 1.50702 * 109.47245 * 175.00084 * 7 6 4
10 10 H 1.08002 * 120.00299 * 240.00501 * 9 7 6
11 11 C 1.37884 * 119.99942 * 59.72060 * 9 7 6
12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7
13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7
14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9
15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9
16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9
17 17 O 1.45202 * 109.47242 * 295.00029 * 7 6 4
18 18 C 1.34891 * 117.00009 * 150.00186 * 17 7 6
19 19 O 1.21627 * 120.00290 * 359.97438 * 18 17 7
20 20 C 1.46395 * 120.00193 * 180.02562 * 18 17 7
21 21 S 1.75834 * 125.45814 * 359.69481 * 20 18 17
22 22 C 1.70619 * 91.56059 * 179.97438 * 21 20 18
23 23 C 1.33861 * 110.96250 * 0.32174 * 22 21 20
24 24 C 1.36745 * 125.46462 * 179.97438 * 20 18 17
25 25 C 1.50705 * 123.35818 * 0.02562 * 24 20 18
26 26 O 1.42898 * 109.47077 * 179.97438 * 25 24 20
27 27 C 1.42903 * 113.99808 * 180.02562 * 26 25 24
28 28 H 1.08996 * 109.47539 * 60.00348 * 1 2 3
29 29 H 1.09002 * 109.47057 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.47437 * 299.99465 * 1 2 3
31 31 H 1.08997 * 109.47243 * 240.00214 * 2 1 3
32 32 H 1.09003 * 109.47024 * 120.00085 * 2 1 3
33 33 H 1.09001 * 109.47070 * 59.99913 * 6 4 3
34 34 H 1.09004 * 109.47393 * 300.00171 * 6 4 3
35 35 H 0.97005 * 119.99651 * 179.97438 * 12 11 9
36 36 H 1.07999 * 124.51782 * 180.10906 * 22 21 20
37 37 H 1.07997 * 122.44053 * 179.77296 * 23 22 21
38 38 H 1.08993 * 109.46692 * 299.99586 * 25 24 20
39 39 H 1.09002 * 109.46909 * 59.99620 * 25 24 20
40 40 H 1.09004 * 109.47145 * 59.99959 * 27 26 25
41 41 H 1.08997 * 109.47418 * 179.97438 * 27 26 25
42 42 H 1.09001 * 109.46735 * 300.00298 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5449 0.0005
5 8 4.0807 0.5867 0.0015
6 6 3.9206 2.9374 0.0012
7 6 5.4485 2.8574 0.0010
8 1 5.7805 2.2502 -0.8411
9 6 6.0242 4.2447 -0.1222
10 1 6.6589 4.4936 -0.9598
11 6 5.7359 5.1979 0.8315
12 7 4.9631 4.8949 1.8515
13 14 6.4433 6.9196 0.6747
14 1 5.5063 7.7710 -0.1016
15 1 6.6352 7.5011 2.0276
16 1 7.7507 6.8558 -0.0267
17 8 5.9017 2.2538 1.2414
18 6 7.0520 1.5507 1.1959
19 8 7.6591 1.4450 0.1473
20 6 7.5691 0.9138 2.4084
21 16 6.8153 0.9787 3.9956
22 6 8.0554 0.0241 4.6751
23 6 8.9681 -0.3032 3.7522
24 6 8.7187 0.1777 2.4893
25 6 9.6235 -0.0783 1.3116
26 8 10.7332 -0.8764 1.7282
27 6 11.6578 -1.1780 0.6810
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 3.5843 3.4693 0.8912
34 1 3.5850 3.4699 -0.8888
35 1 4.7605 5.5654 2.5226
36 1 8.1001 -0.2734 5.7124
37 1 9.8363 -0.9026 3.9830
38 1 9.0685 -0.6043 0.5348
39 1 9.9864 0.8716 0.9191
40 1 12.0626 -0.2507 0.2756
41 1 12.4707 -1.7859 1.0780
42 1 11.1453 -1.7268 -0.1091
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000870618326.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:19
Heat of formation + Delta-G solvation = -188.549575 kcal
Electronic energy + Delta-G solvation = -28094.684468 eV
Core-core repulsion = 23939.195444 eV
Total energy + Delta-G solvation = -4155.489024 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.106 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-39.84911 -39.25522 -38.18831 -36.73321 -36.12809 -35.14939 -33.10077 -31.60126
-30.51155 -30.08663 -28.00547 -26.31363 -25.56032 -23.49601 -23.17817 -22.16332
-21.04747 -19.79174 -18.19075 -18.04526 -17.21942 -16.54942 -16.22137 -16.08514
-15.78147 -15.61761 -15.46850 -15.17388 -14.72779 -14.45618 -14.18886 -13.90585
-13.79688 -13.16153 -12.94947 -12.69161 -12.39835 -12.24230 -12.03914 -11.96933
-11.84432 -11.77878 -11.49752 -11.28490 -11.18712 -11.04837 -10.92015 -10.79138
-10.48584 -10.29704 -10.15140 -9.72814 -9.67972 -9.49135 -9.42935 -8.83407
-8.76235 -8.44590 -8.08659 -6.27693 -4.45132 0.86214 1.88333 2.32261
2.71659 2.99375 3.16991 3.26311 3.28823 3.33020 3.83492 3.88807
3.90857 4.24531 5.04837 5.07240 5.08136 5.14682 5.31869 5.37768
5.39512 5.47018 5.50070 5.64588 5.68429 5.78102 5.81655 5.83279
5.89295 5.93960 6.07276 6.24156 6.31376 6.46903 6.55512 6.59060
6.90387 6.98997 7.24277 7.28737 7.64233 7.86933 7.92875 8.48961
8.61880 9.01158 9.31445 10.74701
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.007774 B = 0.004592 C = 0.003545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3600.924836 B = 6096.630970 C = 7896.817778
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.059 3.941
3 O -0.366 6.366
4 C 0.456 3.544
5 O -0.516 6.516
6 C -0.102 4.102
7 C 0.232 3.768
8 H 0.047 0.953
9 C -0.547 4.547
10 H 0.070 0.930
11 C 0.082 3.918
12 N -0.859 5.859
13 Si 0.897 3.103
14 H -0.275 1.275
15 H -0.283 1.283
16 H -0.271 1.271
17 O -0.324 6.324
18 C 0.536 3.464
19 O -0.520 6.520
20 C -0.232 4.232
21 S 0.262 5.738
22 C -0.262 4.262
23 C -0.129 4.129
24 C -0.042 4.042
25 C 0.126 3.874
26 O -0.394 6.394
27 C 0.034 3.966
28 H 0.064 0.936
29 H 0.073 0.927
30 H 0.065 0.935
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.142 0.858
34 H 0.105 0.895
35 H 0.268 0.732
36 H 0.165 0.835
37 H 0.146 0.854
38 H 0.073 0.927
39 H 0.075 0.925
40 H 0.042 0.958
41 H 0.083 0.917
42 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.103 -9.138 2.832 9.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.016 4.016
3 O -0.284 6.284
4 C 0.301 3.699
5 O -0.404 6.404
6 C -0.140 4.140
7 C 0.180 3.820
8 H 0.065 0.935
9 C -0.584 4.584
10 H 0.089 0.911
11 C -0.125 4.125
12 N -0.494 5.494
13 Si 0.724 3.276
14 H -0.201 1.201
15 H -0.208 1.208
16 H -0.196 1.196
17 O -0.239 6.239
18 C 0.380 3.620
19 O -0.413 6.413
20 C -0.351 4.351
21 S 0.532 5.468
22 C -0.400 4.400
23 C -0.161 4.161
24 C -0.057 4.057
25 C 0.049 3.951
26 O -0.314 6.314
27 C -0.062 4.062
28 H 0.083 0.917
29 H 0.092 0.908
30 H 0.084 0.916
31 H 0.081 0.919
32 H 0.083 0.917
33 H 0.159 0.841
34 H 0.123 0.877
35 H 0.078 0.922
36 H 0.183 0.817
37 H 0.164 0.836
38 H 0.091 0.909
39 H 0.093 0.907
40 H 0.060 0.940
41 H 0.102 0.898
42 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -1.207 -8.756 3.494 9.504
hybrid contribution 1.729 0.134 -0.800 1.910
sum 0.522 -8.622 2.694 9.048
Atomic orbital electron populations
1.21777 0.93276 1.02326 1.03331 1.22860 0.94860 0.81780 1.02059
1.86577 1.26079 1.30990 1.84719 1.24915 0.79515 0.94309 0.71166
1.90601 1.60234 1.43667 1.45870 1.21881 0.96558 0.88164 1.07369
1.20090 0.88087 0.92569 0.81295 0.93471 1.21364 1.32401 0.94108
1.10501 0.91142 1.25104 0.93788 0.99165 0.94422 1.69858 1.34200
1.34494 1.10867 0.86501 0.79898 0.83442 0.77758 1.20098 1.20809
1.19574 1.86698 1.35767 1.59404 1.42055 1.19290 0.80944 0.75934
0.85807 1.90722 1.59154 1.60187 1.31226 1.23804 1.02060 1.10750
0.98533 1.83470 1.21603 1.44128 0.97583 1.25454 1.02171 1.07503
1.04844 1.19652 1.01502 1.03812 0.91115 1.19106 0.93755 0.97033
0.95775 1.20993 0.85738 0.95353 0.93046 1.87772 1.35890 1.72229
1.35470 1.22694 0.92578 0.99917 0.91053 0.91713 0.90849 0.91577
0.91882 0.91723 0.84095 0.87736 0.92167 0.81744 0.83630 0.90873
0.90724 0.93959 0.89847 0.94015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16
2 C 0.06 0.86 6.19 37.16 0.23 1.09 16
3 O -0.37 -6.70 10.22 -39.27 -0.40 -7.10 16
4 C 0.46 9.72 7.84 36.00 0.28 10.00 16
5 O -0.52 -12.15 15.17 -23.95 -0.36 -12.52 16
6 C -0.10 -2.29 5.23 -27.89 -0.15 -2.43 16
7 C 0.23 5.89 1.65 -27.88 -0.05 5.85 16
8 H 0.05 1.25 6.98 -51.93 -0.36 0.89 16
9 C -0.55 -14.49 8.92 -34.44 -0.31 -14.80 16
10 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16
11 C 0.08 2.11 5.25 -17.82 -0.09 2.02 16
12 N -0.86 -22.16 10.93 55.43 0.61 -21.55 16
13 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16
14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
17 O -0.32 -8.33 8.39 -46.26 -0.39 -8.72 16
18 C 0.54 13.17 7.89 34.01 0.27 13.44 16
19 O -0.52 -13.35 14.14 -19.36 -0.27 -13.62 16
20 C -0.23 -4.83 6.45 -36.84 -0.24 -5.06 16
21 S 0.26 4.52 22.92 -107.50 -2.46 2.06 16
22 C -0.26 -3.75 10.92 29.20 0.32 -3.43 16
23 C -0.13 -2.03 9.48 -41.42 -0.39 -2.42 16
24 C -0.04 -0.77 5.90 -105.46 -0.62 -1.39 16
25 C 0.13 2.20 4.91 36.01 0.18 2.38 16
26 O -0.39 -5.99 9.62 -35.23 -0.34 -6.33 16
27 C 0.03 0.39 11.01 101.05 1.11 1.51 16
28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16
32 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16
33 H 0.14 3.35 6.21 -51.93 -0.32 3.03 16
34 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16
35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16
36 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16
37 H 0.15 2.03 7.46 -52.49 -0.39 1.64 16
38 H 0.07 1.32 7.83 -51.93 -0.41 0.91 16
39 H 0.07 1.36 7.84 -51.93 -0.41 0.95 16
40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
LS Contribution 377.95 15.07 5.70 5.70
Total: -1.00 -30.77 377.95 -7.69 -38.46
By element:
Atomic # 1 Polarization: 8.75 SS G_CDS: -5.66 Total: 3.09 kcal
Atomic # 6 Polarization: 4.59 SS G_CDS: 0.93 Total: 5.51 kcal
Atomic # 7 Polarization: -22.16 SS G_CDS: 0.61 Total: -21.55 kcal
Atomic # 8 Polarization: -46.52 SS G_CDS: -1.77 Total: -48.29 kcal
Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal
Atomic # 16 Polarization: 4.52 SS G_CDS: -2.46 Total: 2.06 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -30.77 -7.69 -38.46 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870618326.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -150.089 kcal
(2) G-P(sol) polarization free energy of solvation -30.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.864 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds