Wall clock time and date at job start Sat Apr 11 2020 06:30:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.51969 * 2 1
4 4 C 1.53088 * 109.57902 * 239.83712 * 2 1 3
5 5 O 1.42904 * 109.43004 * 182.45805 * 4 2 1
6 6 C 1.42899 * 114.09413 * 61.14146 * 5 4 2
7 7 C 1.53099 * 109.42717 * 298.86051 * 6 5 4
8 8 C 1.53179 * 109.16175 * 57.60412 * 7 6 5
9 9 H 1.09000 * 109.54335 * 62.97458 * 8 7 6
10 10 S 1.81398 * 109.54453 * 183.15439 * 8 7 6
11 11 O 1.42100 * 110.54210 * 54.59637 * 10 8 7
12 12 O 1.42099 * 110.54511 * 191.34427 * 10 8 7
13 13 O 1.52200 * 104.44825 * 302.97323 * 10 8 7
14 14 C 1.35899 * 113.99661 * 284.82846 * 13 10 8
15 15 C 1.38829 * 120.01906 * 273.94889 * 14 13 10
16 16 C 1.38191 * 120.07937 * 179.74641 * 15 14 13
17 17 C 1.38153 * 120.12300 * 0.50640 * 16 15 14
18 18 C 1.38887 * 120.04077 * 359.77122 * 17 16 15
19 19 O 1.35750 * 120.04377 * 179.97438 * 18 17 16
20 20 C 1.34835 * 116.99878 * 353.86728 * 19 18 17
21 21 H 1.08006 * 119.99912 * 5.11146 * 20 19 18
22 22 C 1.38649 * 120.00267 * 185.11184 * 20 19 18
23 23 N 1.31561 * 120.00054 * 0.02562 * 22 20 19
24 24 Si 1.86796 * 120.00029 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47229 * 60.00199 * 24 22 20
26 26 H 1.48507 * 109.47076 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47368 * 299.99919 * 24 22 20
28 28 C 1.38566 * 120.02402 * 94.22685 * 14 13 10
29 29 H 1.09005 * 109.47282 * 299.87414 * 1 2 3
30 30 H 1.08996 * 109.47346 * 59.87865 * 1 2 3
31 31 H 1.09004 * 109.46969 * 179.87806 * 1 2 3
32 32 H 1.09003 * 109.47895 * 302.43857 * 4 2 1
33 33 H 1.09009 * 109.47807 * 62.45756 * 4 2 1
34 34 H 1.08999 * 109.47916 * 178.87495 * 6 5 4
35 35 H 1.09004 * 109.48417 * 58.84806 * 6 5 4
36 36 H 1.08992 * 109.52713 * 177.51020 * 7 6 5
37 37 H 1.08997 * 109.52323 * 297.63787 * 7 6 5
38 38 H 1.08001 * 119.96271 * 359.97438 * 15 14 13
39 39 H 1.07996 * 119.93884 * 180.25533 * 16 15 14
40 40 H 1.08001 * 119.97501 * 179.74407 * 17 16 15
41 41 H 0.97001 * 120.00270 * 180.02562 * 23 22 20
42 42 H 1.08004 * 120.05721 * 359.97438 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0430 -0.7247 -1.2471
5 8 3.4709 -0.7730 -1.2152
6 6 4.0058 -1.4794 -0.0940
7 6 3.5717 -0.7849 1.1996
8 6 2.0419 -0.7245 1.2489
9 1 1.6377 -1.7364 1.2763
10 16 1.5178 0.1788 2.7321
11 8 2.1303 1.4602 2.7780
12 8 0.1204 0.0269 2.9407
13 8 2.1545 -0.5832 3.8855
14 6 1.5398 -1.7596 4.1771
15 6 0.4508 -1.7796 5.0379
16 6 -0.1785 -2.9744 5.3311
17 6 0.2803 -4.1539 4.7770
18 6 1.3728 -4.1405 3.9196
19 8 1.8240 -5.2995 3.3755
20 6 1.2502 -6.4415 3.8051
21 1 0.4137 -6.4022 4.4872
22 6 1.7339 -7.6663 3.3713
23 7 2.7532 -7.7143 2.5408
24 14 0.9385 -9.2484 3.9659
25 1 -0.4912 -9.2649 3.5647
26 1 1.6364 -10.4112 3.3608
27 1 1.0383 -9.3270 5.4455
28 6 2.0030 -2.9407 3.6198
29 1 -0.3634 0.5119 0.8911
30 1 -0.3634 0.5157 -0.8888
31 1 -0.3633 -1.0277 -0.0022
32 1 1.6454 -1.7395 -1.2671
33 1 1.7171 -0.1890 -2.1387
34 1 5.0940 -1.4871 -0.1548
35 1 3.6341 -2.5041 -0.0988
36 1 3.9418 -1.3472 2.0568
37 1 3.9781 0.2261 1.2243
38 1 0.0927 -0.8597 5.4762
39 1 -1.0280 -2.9868 5.9979
40 1 -0.2108 -5.0869 5.0110
41 1 3.0914 -8.5711 2.2370
42 1 2.8526 -2.9275 2.9531
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000882263475.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:23
Heat of formation + Delta-G solvation = -155.856994 kcal
Electronic energy + Delta-G solvation = -29165.191692 eV
Core-core repulsion = 25011.120325 eV
Total energy + Delta-G solvation = -4154.071367 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.106 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.73490 -39.59753 -38.79042 -37.18491 -36.14187 -36.05236 -34.89677 -32.53752
-32.35744 -30.22705 -28.97990 -27.16328 -25.74308 -25.59736 -23.13818 -22.55150
-22.12619 -20.90872 -20.11902 -18.62166 -17.92698 -17.55724 -17.37568 -16.45297
-16.25727 -15.90752 -15.40710 -15.26011 -14.93959 -14.81366 -14.57810 -14.37002
-14.07409 -13.94710 -13.52514 -13.25336 -13.09827 -12.75909 -12.46063 -12.39771
-12.34701 -12.05868 -11.95871 -11.85798 -11.78776 -11.46294 -11.44200 -11.32168
-11.23963 -11.01896 -10.98323 -10.88029 -10.63842 -10.36280 -9.67492 -9.51940
-9.06671 -8.54165 -7.62021 -6.67222 -4.27693 0.13900 1.57902 1.97401
2.26927 3.01135 3.01923 3.05390 3.60487 3.73842 3.77860 3.96110
4.07440 4.12115 4.40295 4.56933 4.76184 4.83886 4.94555 4.99744
5.05532 5.19991 5.26526 5.32479 5.38025 5.39230 5.51051 5.54152
5.55970 5.57919 5.69283 5.74700 5.80818 5.89128 5.95582 6.05528
6.25433 6.46459 6.60837 6.73200 6.98402 7.03607 7.08924 7.37308
7.74961 8.77131 9.38914 10.49445
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.012719 B = 0.004044 C = 0.003390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2200.943471 B = 6921.859961 C = 8256.915476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.107 4.107
3 H 0.093 0.907
4 C 0.074 3.926
5 O -0.380 6.380
6 C 0.068 3.932
7 C -0.141 4.141
8 C -0.612 4.612
9 H 0.148 0.852
10 S 2.600 3.400
11 O -0.937 6.937
12 O -0.946 6.946
13 O -0.660 6.660
14 C 0.098 3.902
15 C -0.180 4.180
16 C -0.058 4.058
17 C -0.213 4.213
18 C 0.163 3.837
19 O -0.166 6.166
20 C -0.397 4.397
21 H 0.096 0.904
22 C 0.044 3.956
23 N -0.856 5.856
24 Si 0.944 3.056
25 H -0.268 1.268
26 H -0.276 1.276
27 H -0.268 1.268
28 C -0.202 4.202
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.059 0.941
33 H 0.100 0.900
34 H 0.102 0.898
35 H 0.062 0.938
36 H 0.093 0.907
37 H 0.090 0.910
38 H 0.124 0.876
39 H 0.126 0.874
40 H 0.139 0.861
41 H 0.274 0.726
42 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.551 10.315 -3.404 11.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.127 4.127
3 H 0.111 0.889
4 C -0.003 4.003
5 O -0.298 6.298
6 C -0.010 4.010
7 C -0.180 4.180
8 C -0.719 4.719
9 H 0.166 0.834
10 S 2.696 3.304
11 O -0.935 6.935
12 O -0.944 6.944
13 O -0.620 6.620
14 C 0.057 3.943
15 C -0.201 4.201
16 C -0.076 4.076
17 C -0.233 4.233
18 C 0.108 3.892
19 O -0.069 6.069
20 C -0.473 4.473
21 H 0.113 0.887
22 C -0.162 4.162
23 N -0.489 5.489
24 Si 0.768 3.232
25 H -0.193 1.193
26 H -0.201 1.201
27 H -0.193 1.193
28 C -0.224 4.224
29 H 0.091 0.909
30 H 0.092 0.908
31 H 0.092 0.908
32 H 0.077 0.923
33 H 0.118 0.882
34 H 0.120 0.880
35 H 0.080 0.920
36 H 0.111 0.889
37 H 0.108 0.892
38 H 0.142 0.858
39 H 0.144 0.856
40 H 0.156 0.844
41 H 0.084 0.916
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -2.233 10.738 -3.337 11.464
hybrid contribution -0.298 -1.217 0.115 1.258
sum -2.531 9.521 -3.222 10.365
Atomic orbital electron populations
1.22203 0.93102 1.04297 1.03921 1.21556 0.96959 1.00328 0.93813
0.88866 1.22565 0.81250 1.00049 0.96479 1.87917 1.20073 1.76478
1.45379 1.22528 0.99370 0.94979 0.84118 1.22029 0.90297 1.04166
1.01479 1.30827 1.06626 1.15771 1.18634 0.83402 1.05484 0.74304
0.75115 0.75467 1.93589 1.77792 1.36916 1.85243 1.93634 1.32550
1.85967 1.82281 1.85608 1.69803 1.41335 1.65249 1.17563 0.94825
0.79747 1.02169 1.20730 0.97539 0.99304 1.02547 1.20677 0.98092
0.91115 0.97738 1.21425 0.99877 0.99355 1.02635 1.18851 0.91743
0.87412 0.91238 1.83968 1.56152 1.11132 1.55627 1.21337 1.15600
0.80915 1.29450 0.88690 1.25336 0.96061 0.98752 0.96085 1.70014
1.22532 1.27103 1.29227 0.85733 0.79046 0.79269 0.79173 1.19294
1.20124 1.19285 1.20066 1.04243 0.89539 1.08541 0.90871 0.90796
0.90797 0.92262 0.88232 0.87993 0.91956 0.88892 0.89184 0.85770
0.85628 0.84376 0.91607 0.84962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.92 8.85 37.16 0.33 -1.59 16
2 C -0.11 -1.23 2.41 -90.48 -0.22 -1.45 16
3 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
4 C 0.07 0.81 6.13 37.20 0.23 1.04 16
5 O -0.38 -4.83 10.77 -35.23 -0.38 -5.21 16
6 C 0.07 0.80 6.84 37.21 0.25 1.06 16
7 C -0.14 -1.74 5.26 -26.59 -0.14 -1.88 16
8 C -0.61 -8.07 1.88 -26.54 -0.05 -8.12 16
9 H 0.15 1.95 7.22 -51.93 -0.37 1.58 16
10 S 2.60 40.91 4.12 -107.50 -0.44 40.46 16
11 O -0.94 -16.44 18.02 -67.04 -1.21 -17.64 16
12 O -0.95 -16.22 14.03 -67.04 -0.94 -17.16 16
13 O -0.66 -11.20 9.74 -51.75 -0.50 -11.70 16
14 C 0.10 1.78 4.85 -39.24 -0.19 1.59 16
15 C -0.18 -3.15 8.78 -39.38 -0.35 -3.49 16
16 C -0.06 -0.97 10.03 -39.63 -0.40 -1.37 16
17 C -0.21 -4.10 9.16 -39.37 -0.36 -4.46 16
18 C 0.16 3.52 6.64 -39.13 -0.26 3.26 16
19 O -0.17 -4.26 9.76 0.03 0.00 -4.26 16
20 C -0.40 -10.06 9.49 30.88 0.29 -9.77 16
21 H 0.10 2.18 5.20 -52.48 -0.27 1.91 16
22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16
23 N -0.86 -23.17 13.67 55.48 0.76 -22.41 16
24 Si 0.94 18.88 29.55 -169.99 -5.02 13.86 16
25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16
26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16
27 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16
28 C -0.20 -3.87 8.63 -39.25 -0.34 -4.21 16
29 H 0.07 0.88 5.73 -51.93 -0.30 0.58 16
30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16
34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.09 1.10 6.94 -51.93 -0.36 0.74 16
37 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16
38 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16
39 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16
40 H 0.14 2.57 5.64 -52.49 -0.30 2.27 16
41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16
42 H 0.13 2.31 6.98 -52.48 -0.37 1.95 16
LS Contribution 352.68 15.07 5.31 5.31
Total: -1.00 -31.01 352.68 -9.05 -40.06
By element:
Atomic # 1 Polarization: 12.42 SS G_CDS: -5.33 Total: 7.09 kcal
Atomic # 6 Polarization: -27.11 SS G_CDS: -1.29 Total: -28.40 kcal
Atomic # 7 Polarization: -23.17 SS G_CDS: 0.76 Total: -22.41 kcal
Atomic # 8 Polarization: -52.94 SS G_CDS: -3.03 Total: -55.97 kcal
Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal
Atomic # 16 Polarization: 40.91 SS G_CDS: -0.44 Total: 40.46 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -31.01 -9.05 -40.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882263475.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -115.800 kcal
(2) G-P(sol) polarization free energy of solvation -31.011 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.811 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -155.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds