Wall clock time and date at job start Sat Apr 11 2020 06:30:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 109.51969 * 2 1
4 4 C 1.53088 * 109.57902 * 239.83712 * 2 1 3
5 5 O 1.42904 * 109.43004 * 182.45805 * 4 2 1
6 6 C 1.42899 * 114.09413 * 61.14146 * 5 4 2
7 7 C 1.53099 * 109.42717 * 298.86051 * 6 5 4
8 8 C 1.53179 * 109.16175 * 57.60412 * 7 6 5
9 9 H 1.09000 * 109.54335 * 62.97458 * 8 7 6
10 10 S 1.81398 * 109.54453 * 183.15439 * 8 7 6
11 11 O 1.42100 * 110.54210 * 54.59637 * 10 8 7
12 12 O 1.42099 * 110.54511 * 191.34427 * 10 8 7
13 13 O 1.52200 * 104.44825 * 302.97323 * 10 8 7
14 14 C 1.35899 * 113.99661 * 284.82846 * 13 10 8
15 15 C 1.38829 * 120.01906 * 273.94889 * 14 13 10
16 16 C 1.38191 * 120.07937 * 179.74641 * 15 14 13
17 17 C 1.38153 * 120.12300 * 0.50640 * 16 15 14
18 18 C 1.38887 * 120.04077 * 359.77122 * 17 16 15
19 19 O 1.35750 * 120.04377 * 179.97438 * 18 17 16
20 20 C 1.34835 * 116.99878 * 353.86728 * 19 18 17
21 21 H 1.08006 * 119.99912 * 5.11146 * 20 19 18
22 22 C 1.38649 * 120.00267 * 185.11184 * 20 19 18
23 23 N 1.31561 * 120.00054 * 0.02562 * 22 20 19
24 24 Si 1.86796 * 120.00029 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47229 * 60.00199 * 24 22 20
26 26 H 1.48507 * 109.47076 * 180.02562 * 24 22 20
27 27 H 1.48500 * 109.47368 * 299.99919 * 24 22 20
28 28 C 1.38566 * 120.02402 * 94.22685 * 14 13 10
29 29 H 1.09005 * 109.47282 * 299.87414 * 1 2 3
30 30 H 1.08996 * 109.47346 * 59.87865 * 1 2 3
31 31 H 1.09004 * 109.46969 * 179.87806 * 1 2 3
32 32 H 1.09003 * 109.47895 * 302.43857 * 4 2 1
33 33 H 1.09009 * 109.47807 * 62.45756 * 4 2 1
34 34 H 1.08999 * 109.47916 * 178.87495 * 6 5 4
35 35 H 1.09004 * 109.48417 * 58.84806 * 6 5 4
36 36 H 1.08992 * 109.52713 * 177.51020 * 7 6 5
37 37 H 1.08997 * 109.52323 * 297.63787 * 7 6 5
38 38 H 1.08001 * 119.96271 * 359.97438 * 15 14 13
39 39 H 1.07996 * 119.93884 * 180.25533 * 16 15 14
40 40 H 1.08001 * 119.97501 * 179.74407 * 17 16 15
41 41 H 0.97001 * 120.00270 * 180.02562 * 23 22 20
42 42 H 1.08004 * 120.05721 * 359.97438 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0430 -0.7247 -1.2471
5 8 3.4709 -0.7730 -1.2152
6 6 4.0058 -1.4794 -0.0940
7 6 3.5717 -0.7849 1.1996
8 6 2.0419 -0.7245 1.2489
9 1 1.6377 -1.7364 1.2763
10 16 1.5178 0.1788 2.7321
11 8 2.1303 1.4602 2.7780
12 8 0.1204 0.0269 2.9407
13 8 2.1545 -0.5832 3.8855
14 6 1.5398 -1.7596 4.1771
15 6 0.4508 -1.7796 5.0379
16 6 -0.1785 -2.9744 5.3311
17 6 0.2803 -4.1539 4.7770
18 6 1.3728 -4.1405 3.9196
19 8 1.8240 -5.2995 3.3755
20 6 1.2502 -6.4415 3.8051
21 1 0.4137 -6.4022 4.4872
22 6 1.7339 -7.6663 3.3713
23 7 2.7532 -7.7143 2.5408
24 14 0.9385 -9.2484 3.9659
25 1 -0.4912 -9.2649 3.5647
26 1 1.6364 -10.4112 3.3608
27 1 1.0383 -9.3270 5.4455
28 6 2.0030 -2.9407 3.6198
29 1 -0.3634 0.5119 0.8911
30 1 -0.3634 0.5157 -0.8888
31 1 -0.3633 -1.0277 -0.0022
32 1 1.6454 -1.7395 -1.2671
33 1 1.7171 -0.1890 -2.1387
34 1 5.0940 -1.4871 -0.1548
35 1 3.6341 -2.5041 -0.0988
36 1 3.9418 -1.3472 2.0568
37 1 3.9781 0.2261 1.2243
38 1 0.0927 -0.8597 5.4762
39 1 -1.0280 -2.9868 5.9979
40 1 -0.2108 -5.0869 5.0110
41 1 3.0914 -8.5711 2.2370
42 1 2.8526 -2.9275 2.9531
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000882263475.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:22
Heat of formation + Delta-G solvation = -176.344951 kcal
Electronic energy + Delta-G solvation = -29166.080116 eV
Core-core repulsion = 25011.120325 eV
Total energy + Delta-G solvation = -4154.959792 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.106 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.16485 -40.56713 -40.40057 -38.52297 -37.68364 -37.40964 -35.88049 -34.33300
-33.33697 -31.73050 -30.52211 -28.09094 -27.44580 -26.68108 -24.57845 -23.68971
-23.47344 -22.11655 -21.41443 -20.07430 -19.33415 -19.05617 -18.70603 -17.91229
-17.27088 -17.12200 -16.83070 -16.63792 -16.18473 -16.00639 -15.80431 -15.66856
-15.56834 -15.32700 -14.90878 -14.61935 -14.26942 -14.02569 -13.89136 -13.57973
-13.51573 -13.38929 -13.37303 -13.10905 -12.98590 -12.86497 -12.80566 -12.53240
-12.44293 -12.26057 -12.22449 -12.16500 -11.94325 -11.36762 -11.33456 -10.83208
-10.52717 -9.99979 -9.24972 -8.49761 -6.18702 -1.14368 0.11690 0.45876
0.91393 1.39731 1.48354 1.54352 2.15558 2.36802 2.55482 2.77990
2.84058 3.00931 3.07321 3.24294 3.33822 3.64739 3.78478 3.82759
4.00879 4.08324 4.11096 4.16122 4.18242 4.27376 4.36250 4.42540
4.50498 4.55918 4.68653 4.70450 4.72582 4.80551 4.89579 5.00134
5.00189 5.06395 5.16754 5.20060 5.44368 5.48519 5.87661 5.94987
6.11040 6.94543 7.65482 8.71482
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.012719 B = 0.004044 C = 0.003390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2200.943471 B = 6921.859961 C = 8256.915476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.108 4.108
3 H 0.100 0.900
4 C 0.071 3.929
5 O -0.391 6.391
6 C 0.067 3.933
7 C -0.146 4.146
8 C -0.600 4.600
9 H 0.146 0.854
10 S 2.603 3.397
11 O -0.956 6.956
12 O -0.961 6.961
13 O -0.665 6.665
14 C 0.094 3.906
15 C -0.175 4.175
16 C -0.047 4.047
17 C -0.216 4.216
18 C 0.136 3.864
19 O -0.214 6.214
20 C -0.416 4.416
21 H 0.111 0.889
22 C -0.015 4.015
23 N -0.913 5.913
24 Si 1.015 2.985
25 H -0.256 1.256
26 H -0.276 1.276
27 H -0.257 1.257
28 C -0.204 4.204
29 H 0.059 0.941
30 H 0.102 0.898
31 H 0.071 0.929
32 H 0.058 0.942
33 H 0.127 0.873
34 H 0.120 0.880
35 H 0.054 0.946
36 H 0.094 0.906
37 H 0.096 0.904
38 H 0.147 0.853
39 H 0.170 0.830
40 H 0.144 0.856
41 H 0.274 0.726
42 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.055 11.165 -2.969 12.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.128 4.128
3 H 0.118 0.882
4 C -0.007 4.007
5 O -0.309 6.309
6 C -0.011 4.011
7 C -0.185 4.185
8 C -0.709 4.709
9 H 0.164 0.836
10 S 2.702 3.298
11 O -0.955 6.955
12 O -0.960 6.960
13 O -0.624 6.624
14 C 0.053 3.947
15 C -0.196 4.196
16 C -0.065 4.065
17 C -0.235 4.235
18 C 0.084 3.916
19 O -0.119 6.119
20 C -0.492 4.492
21 H 0.128 0.872
22 C -0.214 4.214
23 N -0.550 5.550
24 Si 0.834 3.166
25 H -0.180 1.180
26 H -0.201 1.201
27 H -0.181 1.181
28 C -0.225 4.225
29 H 0.078 0.922
30 H 0.120 0.880
31 H 0.090 0.910
32 H 0.076 0.924
33 H 0.144 0.856
34 H 0.138 0.862
35 H 0.072 0.928
36 H 0.112 0.888
37 H 0.115 0.885
38 H 0.165 0.835
39 H 0.188 0.812
40 H 0.161 0.839
41 H 0.083 0.917
42 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -3.772 11.655 -2.845 12.576
hybrid contribution 0.129 -1.146 0.011 1.154
sum -3.643 10.509 -2.834 11.478
Atomic orbital electron populations
1.22251 0.92451 1.04419 1.04690 1.21676 0.97573 1.00508 0.93055
0.88172 1.22749 0.80441 1.00361 0.97104 1.87907 1.21052 1.76465
1.45499 1.22592 1.00477 0.94335 0.83670 1.22134 0.89624 1.04741
1.01986 1.30718 1.07376 1.15150 1.17676 0.83613 1.05323 0.73785
0.74808 0.75873 1.93563 1.77985 1.38161 1.85753 1.93607 1.33306
1.86144 1.82902 1.85576 1.69906 1.40786 1.66177 1.17645 0.95059
0.79793 1.02175 1.21226 0.96571 1.00628 1.01128 1.21118 0.98652
0.89556 0.97153 1.21639 0.99129 1.00724 1.02049 1.19306 0.92903
0.87106 0.92276 1.83949 1.57993 1.12126 1.57852 1.21857 1.16132
0.81366 1.29805 0.87161 1.26522 0.96570 1.02165 0.96125 1.70155
1.25070 1.27818 1.31913 0.84685 0.78385 0.74497 0.78992 1.17980
1.20112 1.18119 1.20196 1.04413 0.89387 1.08552 0.92184 0.87968
0.91036 0.92385 0.85561 0.86227 0.92812 0.88800 0.88503 0.83542
0.81226 0.83896 0.91702 0.84304
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.60 8.85 71.98 0.64 -2.96 16
2 C -0.11 -2.33 2.41 -10.70 -0.03 -2.35 16
3 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16
4 C 0.07 1.42 6.13 72.01 0.44 1.86 16
5 O -0.39 -9.36 10.77 -148.98 -1.60 -10.97 16
6 C 0.07 1.54 6.84 72.02 0.49 2.03 16
7 C -0.15 -3.52 5.26 30.69 0.16 -3.35 16
8 C -0.60 -15.38 1.88 30.72 0.06 -15.32 16
9 H 0.15 3.84 7.22 -2.39 -0.02 3.83 16
10 S 2.60 79.57 4.12 -56.49 -0.23 79.33 16
11 O -0.96 -32.74 18.02 -118.57 -2.14 -34.88 16
12 O -0.96 -31.80 14.03 -118.57 -1.66 -33.47 16
13 O -0.67 -21.96 9.74 -61.51 -0.60 -22.55 16
14 C 0.09 3.32 4.85 22.49 0.11 3.43 16
15 C -0.17 -5.66 8.78 22.40 0.20 -5.47 16
16 C -0.05 -1.43 10.03 22.24 0.22 -1.21 16
17 C -0.22 -8.05 9.16 22.40 0.21 -7.84 16
18 C 0.14 5.95 6.64 22.56 0.15 6.10 16
19 O -0.21 -11.36 9.76 -22.79 -0.22 -11.58 16
20 C -0.42 -21.57 9.49 67.92 0.64 -20.93 16
21 H 0.11 5.08 5.20 -2.91 -0.02 5.06 16
22 C -0.01 -0.76 5.49 84.83 0.47 -0.29 16
23 N -0.91 -51.57 13.67 21.61 0.30 -51.28 16
24 Si 1.01 38.93 29.55 68.60 2.03 40.96 16
25 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16
26 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16
27 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16
28 C -0.20 -7.85 8.63 22.48 0.19 -7.66 16
29 H 0.06 1.36 5.73 -2.38 -0.01 1.35 16
30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
33 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16
34 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16
35 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16
36 H 0.09 2.21 6.94 -2.39 -0.02 2.19 16
37 H 0.10 2.19 8.11 -2.39 -0.02 2.17 16
38 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16
39 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16
40 H 0.14 5.15 5.64 -2.91 -0.02 5.13 16
41 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16
42 H 0.14 5.00 6.98 -2.91 -0.02 4.98 16
Total: -1.00 -68.54 352.68 0.87 -67.67
By element:
Atomic # 1 Polarization: 29.68 SS G_CDS: 1.05 Total: 30.72 kcal
Atomic # 6 Polarization: -57.91 SS G_CDS: 3.95 Total: -53.96 kcal
Atomic # 7 Polarization: -51.57 SS G_CDS: 0.30 Total: -51.28 kcal
Atomic # 8 Polarization: -107.23 SS G_CDS: -6.23 Total: -113.45 kcal
Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal
Atomic # 16 Polarization: 79.57 SS G_CDS: -0.23 Total: 79.33 kcal
Total: -68.54 0.87 -67.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882263475.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.670 kcal
(2) G-P(sol) polarization free energy of solvation -68.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -176.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds