Wall clock time and date at job start Sat Apr 11 2020 06:28:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50700 * 119.99960 * 2 1
4 4 O 1.42899 * 109.46915 * 134.99740 * 3 2 1
5 5 C 1.42907 * 113.99998 * 179.97438 * 4 3 2
6 6 C 1.53001 * 109.47123 * 180.02562 * 5 4 3
7 7 H 1.08998 * 109.46543 * 175.00339 * 6 5 4
8 8 C 1.52999 * 109.47063 * 55.00664 * 6 5 4
9 9 S 1.81395 * 109.47038 * 180.02562 * 8 6 5
10 10 O 1.42101 * 110.54000 * 291.62033 * 9 8 6
11 11 O 1.42096 * 110.54596 * 68.37212 * 9 8 6
12 12 O 1.52204 * 104.44795 * 179.97438 * 9 8 6
13 13 O 1.42895 * 109.47265 * 294.99964 * 6 5 4
14 14 C 1.35676 * 117.00145 * 228.42332 * 13 6 5
15 15 C 1.39314 * 119.81386 * 173.87705 * 14 13 6
16 16 C 1.36438 * 120.18078 * 179.76101 * 15 14 13
17 17 C 1.40832 * 119.80980 * 0.51113 * 16 15 14
18 18 C 1.41215 * 120.17838 * 179.72006 * 17 16 15
19 19 H 1.08001 * 120.00244 * 25.36943 * 18 17 16
20 20 C 1.39890 * 120.00330 * 205.37231 * 18 17 16
21 21 N 1.30887 * 119.99792 * 16.85124 * 20 18 17
22 22 Si 1.86796 * 120.00298 * 196.84946 * 20 18 17
23 23 H 1.48495 * 109.47278 * 359.97438 * 22 20 18
24 24 H 1.48501 * 109.47159 * 120.00068 * 22 20 18
25 25 H 1.48503 * 109.47524 * 239.99995 * 22 20 18
26 26 C 1.40834 * 119.64536 * 359.74294 * 17 16 15
27 27 C 1.36437 * 119.80873 * 0.02562 * 26 17 16
28 28 H 1.08003 * 119.99864 * 0.02562 * 1 2 3
29 29 H 1.07998 * 120.00038 * 179.97438 * 1 2 3
30 30 H 1.08003 * 119.99864 * 179.97438 * 2 1 3
31 31 H 1.09004 * 109.47082 * 15.00091 * 3 2 1
32 32 H 1.08999 * 109.47356 * 254.99572 * 3 2 1
33 33 H 1.09000 * 109.47177 * 300.00196 * 5 4 3
34 34 H 1.09002 * 109.46459 * 60.00259 * 5 4 3
35 35 H 1.09003 * 109.46925 * 299.99677 * 8 6 5
36 36 H 1.08999 * 109.47187 * 59.99492 * 8 6 5
37 37 H 0.96698 * 113.99645 * 179.97438 * 12 9 8
38 38 H 1.08000 * 119.91184 * 0.02562 * 15 14 13
39 39 H 1.08001 * 120.09730 * 180.25363 * 16 15 14
40 40 H 0.97001 * 119.99854 * 180.02562 * 21 20 18
41 41 H 1.07998 * 120.09216 * 179.97438 * 26 17 16
42 42 H 1.08000 * 119.90965 * 179.97438 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 8 3.1266 1.2413 0.9527
5 6 3.9084 2.4349 1.0321
6 6 5.0112 2.2537 2.0771
7 1 5.6610 3.1288 2.0750
8 6 5.8329 1.0077 1.7405
9 16 7.1399 0.7924 2.9798
10 8 8.1090 1.8255 2.8670
11 8 6.5806 0.4470 4.2396
12 8 7.8772 -0.4643 2.5398
13 8 4.4220 2.1010 3.3699
14 6 4.9311 2.8603 4.3724
15 6 4.3203 2.8543 5.6245
16 6 4.8288 3.6113 6.6394
17 6 5.9680 4.4084 6.4153
18 6 6.4973 5.1995 7.4585
19 1 6.3284 4.9193 8.4877
20 6 7.2405 6.3461 7.1588
21 7 7.1762 6.8736 5.9626
22 14 8.3248 7.1244 8.4657
23 1 8.2220 6.3428 9.7240
24 1 9.7348 7.1303 7.9998
25 1 7.8791 8.5194 8.7123
26 6 6.5762 4.4128 5.1450
27 6 6.0579 3.6464 4.1422
28 1 -0.5400 0.9353 -0.0004
29 1 -0.5400 -0.9353 -0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3855 2.1161 0.2660
32 1 2.4756 1.4868 -0.9926
33 1 4.3588 2.6396 0.0608
34 1 3.2689 3.2695 1.3193
35 1 5.1831 0.1325 1.7426
36 1 6.2823 1.1242 0.7544
37 1 8.6150 -0.7091 3.1149
38 1 3.4444 2.2455 5.7936
39 1 4.3567 3.6025 7.6107
40 1 7.6918 7.6684 5.7547
41 1 7.4498 5.0217 4.9651
42 1 6.5228 3.6489 3.1674
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001225265797.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:34
Heat of formation + Delta-G solvation = -174.801152 kcal
Electronic energy + Delta-G solvation = -28318.329537 eV
Core-core repulsion = 24163.436690 eV
Total energy + Delta-G solvation = -4154.892848 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.106 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.04042 -39.20048 -39.19064 -38.20803 -38.11933 -36.97238 -35.42444 -34.82172
-33.33292 -31.56660 -30.83770 -28.57294 -26.83316 -26.49040 -24.11684 -22.96533
-22.32100 -21.29662 -20.77491 -19.42865 -19.31472 -19.05865 -18.47469 -17.54074
-17.41696 -17.13588 -17.03443 -16.48615 -16.00445 -15.88116 -15.61522 -15.51121
-15.17629 -14.53456 -14.39952 -14.16926 -14.13302 -13.88569 -13.72322 -13.56383
-13.26989 -13.18213 -13.14496 -13.02827 -12.91783 -12.79550 -12.71756 -12.51878
-12.33231 -11.98463 -11.79538 -11.64155 -11.50093 -11.14877 -10.87885 -10.81902
-10.21078 -9.57734 -8.91176 -8.58807 -6.21853 -0.78856 0.89931 1.05977
1.26138 1.39896 1.50780 1.55314 1.75995 2.23951 2.35087 2.60746
2.70628 2.77855 3.30454 3.37225 3.65685 3.71431 3.84037 4.09916
4.19474 4.22901 4.33442 4.36978 4.38036 4.48877 4.50658 4.66188
4.69941 4.87607 4.99423 5.00235 5.16616 5.18150 5.38726 5.50790
5.66316 5.67744 5.75116 5.93386 6.07526 6.20173 6.24805 6.54338
6.75674 6.96131 7.07469 8.38872
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.013328 B = 0.003397 C = 0.002960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2100.360353 B = 8240.064410 C = 9456.130416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.170 4.170
3 C 0.081 3.919
4 O -0.393 6.393
5 C 0.072 3.928
6 C 0.076 3.924
7 H 0.108 0.892
8 C -0.612 4.612
9 S 2.623 3.377
10 O -0.998 6.998
11 O -0.988 6.988
12 O -0.891 6.891
13 O -0.312 6.312
14 C -0.002 4.002
15 C -0.112 4.112
16 C -0.203 4.203
17 C 0.055 3.945
18 C -0.498 4.498
19 H 0.076 0.924
20 C 0.032 3.968
21 N -0.830 5.830
22 Si 0.982 3.018
23 H -0.259 1.259
24 H -0.266 1.266
25 H -0.264 1.264
26 C -0.144 4.144
27 C -0.200 4.200
28 H 0.104 0.896
29 H 0.116 0.884
30 H 0.116 0.884
31 H 0.056 0.944
32 H 0.079 0.921
33 H 0.107 0.893
34 H 0.063 0.937
35 H 0.163 0.837
36 H 0.188 0.812
37 H 0.473 0.527
38 H 0.118 0.882
39 H 0.111 0.889
40 H 0.287 0.713
41 H 0.107 0.893
42 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.798 -11.034 -15.498 19.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.188 4.188
3 C 0.005 3.995
4 O -0.313 6.313
5 C -0.006 4.006
6 C 0.018 3.982
7 H 0.125 0.875
8 C -0.743 4.743
9 S 2.718 3.282
10 O -0.996 6.996
11 O -0.987 6.987
12 O -0.762 6.762
13 O -0.228 6.228
14 C -0.046 4.046
15 C -0.131 4.131
16 C -0.223 4.223
17 C 0.053 3.947
18 C -0.528 4.528
19 H 0.094 0.906
20 C -0.182 4.182
21 N -0.457 5.457
22 Si 0.803 3.197
23 H -0.183 1.183
24 H -0.191 1.191
25 H -0.189 1.189
26 C -0.163 4.163
27 C -0.219 4.219
28 H 0.122 0.878
29 H 0.134 0.866
30 H 0.134 0.866
31 H 0.074 0.926
32 H 0.096 0.904
33 H 0.125 0.875
34 H 0.081 0.919
35 H 0.181 0.819
36 H 0.206 0.794
37 H 0.345 0.655
38 H 0.136 0.864
39 H 0.129 0.871
40 H 0.098 0.902
41 H 0.125 0.875
42 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -3.737 -11.088 -15.339 19.292
hybrid contribution 0.518 0.694 0.327 0.926
sum -3.218 -10.394 -15.012 18.540
Atomic orbital electron populations
1.24044 0.95363 1.03217 0.98524 1.22824 0.96185 0.98132 1.01690
1.21729 0.88750 0.96330 0.92703 1.87933 1.45223 1.36526 1.61653
1.22696 0.92044 0.88028 0.97784 1.22458 0.95925 0.96447 0.83388
0.87481 1.30519 1.15765 1.08724 1.19310 1.03922 0.76507 0.72556
0.75177 1.93615 1.58836 1.60083 1.87081 1.93638 1.81061 1.81452
1.42518 1.85414 1.56939 1.64662 1.69211 1.86133 1.59274 1.61330
1.16044 1.18661 0.97394 0.99103 0.89411 1.19868 1.00713 1.01283
0.91193 1.20830 0.98534 1.04223 0.98674 1.17977 0.90943 0.92175
0.93626 1.19737 1.30815 1.07946 0.94260 0.90589 1.26743 0.96260
0.96619 0.98573 1.69885 1.34239 1.18634 1.22949 0.85160 0.77909
0.78148 0.78468 1.18266 1.19052 1.18901 1.20872 1.00707 1.00712
0.94030 1.20914 0.98560 1.02314 1.00069 0.87809 0.86571 0.86617
0.92555 0.90356 0.87550 0.91921 0.81874 0.79423 0.65541 0.86356
0.87099 0.90228 0.87512 0.85804
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.55 14.31 67.78 0.97 -1.58 16
2 C -0.17 -2.95 9.89 25.65 0.25 -2.70 16
3 C 0.08 1.45 6.35 71.24 0.45 1.91 16
4 O -0.39 -9.53 9.41 -144.35 -1.36 -10.89 16
5 C 0.07 1.63 5.81 71.98 0.42 2.05 16
6 C 0.08 2.24 2.51 30.59 0.08 2.31 16
7 H 0.11 3.19 4.97 -2.39 -0.01 3.18 16
8 C -0.61 -14.21 5.69 71.98 0.41 -13.80 16
9 S 2.62 78.16 4.23 -56.49 -0.24 77.93 16
10 O -1.00 -35.88 16.63 -118.57 -1.97 -37.85 16
11 O -0.99 -39.39 16.40 -117.12 -1.92 -41.31 16
12 O -0.89 -17.86 13.27 -118.07 -1.57 -19.43 16
13 O -0.31 -12.40 9.08 -74.69 -0.68 -13.08 16
14 C 0.00 -0.10 5.19 22.79 0.12 0.02 16
15 C -0.11 -5.50 9.92 22.11 0.22 -5.28 16
16 C -0.20 -10.68 9.74 22.48 0.22 -10.46 16
17 C 0.05 3.14 5.57 -21.28 -0.12 3.02 16
18 C -0.50 -28.04 9.04 23.40 0.21 -27.83 16
19 H 0.08 4.13 7.90 -2.91 -0.02 4.10 16
20 C 0.03 1.66 5.15 85.23 0.44 2.10 16
21 N -0.83 -44.74 10.95 21.82 0.24 -44.51 16
22 Si 0.98 39.71 29.59 68.60 2.03 41.74 16
23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16
24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16
25 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16
26 C -0.14 -8.03 8.64 22.48 0.19 -7.84 16
27 C -0.20 -9.79 7.57 22.11 0.17 -9.63 16
28 H 0.10 1.36 7.90 -2.91 -0.02 1.34 16
29 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16
30 H 0.12 1.95 8.06 -2.91 -0.02 1.92 16
31 H 0.06 0.98 7.86 -2.38 -0.02 0.96 16
32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
33 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16
34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.16 3.53 7.56 -2.39 -0.02 3.51 16
36 H 0.19 2.54 8.14 -2.39 -0.02 2.52 16
37 H 0.47 5.51 9.03 -87.93 -0.79 4.71 16
38 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16
39 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16
40 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16
41 H 0.11 6.22 6.18 -2.91 -0.02 6.20 16
42 H 0.12 5.33 4.55 -2.91 -0.01 5.32 16
Total: -1.00 -79.72 365.33 -1.18 -80.90
By element:
Atomic # 1 Polarization: 33.93 SS G_CDS: 0.26 Total: 34.19 kcal
Atomic # 6 Polarization: -71.73 SS G_CDS: 4.03 Total: -67.70 kcal
Atomic # 7 Polarization: -44.74 SS G_CDS: 0.24 Total: -44.51 kcal
Atomic # 8 Polarization: -115.06 SS G_CDS: -7.50 Total: -122.55 kcal
Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal
Atomic # 16 Polarization: 78.16 SS G_CDS: -0.24 Total: 77.93 kcal
Total: -79.72 -1.18 -80.90 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001225265797.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.903 kcal
(2) G-P(sol) polarization free energy of solvation -79.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.898 kcal
(6) G-S(sol) free energy of system = (1) + (5) -174.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds